Wall clock time and date at job start Mon Mar 30 2020 06:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47452 * 2 1 4 4 H 1.09002 * 109.46905 * 54.28806 * 3 2 1 5 5 C 1.50703 * 109.47213 * 174.28594 * 3 2 1 6 6 H 1.07999 * 119.99947 * 25.65942 * 5 3 2 7 7 C 1.37871 * 120.00057 * 205.65777 * 5 3 2 8 8 N 1.31519 * 120.00108 * 353.26858 * 7 5 3 9 9 Si 1.86804 * 120.00076 * 173.27059 * 7 5 3 10 10 H 1.48500 * 109.47248 * 89.99926 * 9 7 5 11 11 H 1.48495 * 109.46994 * 210.00183 * 9 7 5 12 12 H 1.48498 * 109.46874 * 330.00014 * 9 7 5 13 13 N 1.46496 * 109.47170 * 294.28951 * 3 2 1 14 14 C 1.39154 * 120.00528 * 84.99844 * 13 3 2 15 15 C 1.38854 * 120.14266 * 0.02562 * 14 13 3 16 16 C 1.38028 * 120.09995 * 179.97438 * 15 14 13 17 17 C 1.38744 * 120.39474 * 0.02562 * 16 15 14 18 18 F 1.35099 * 119.85521 * 180.02562 * 17 16 15 19 19 C 1.37983 * 120.29630 * 0.02562 * 17 16 15 20 20 C 1.39755 * 119.89274 * 359.68096 * 19 17 16 21 21 C 1.43197 * 120.19784 * 180.29707 * 20 19 17 22 22 N 5.67851 * 91.81899 * 306.56827 * 2 1 3 23 23 H 1.09005 * 109.47085 * 299.99975 * 1 2 3 24 24 H 1.08996 * 109.47110 * 59.99659 * 1 2 3 25 25 H 1.08995 * 109.47248 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47085 * 240.00025 * 2 1 3 27 27 H 1.08996 * 109.47110 * 120.00341 * 2 1 3 28 28 H 0.96994 * 119.99744 * 354.66505 * 8 7 5 29 29 H 0.97004 * 120.00111 * 264.99989 * 13 3 2 30 30 H 1.07999 * 119.95091 * 359.96911 * 15 14 13 31 31 H 1.07998 * 119.80566 * 180.02562 * 16 15 14 32 32 H 1.08003 * 120.05188 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5956 1.9849 0.8345 5 6 3.5404 1.4447 0.1415 6 1 4.1147 0.5895 -0.1829 7 6 4.1799 2.5386 0.6849 8 7 3.4990 3.6303 0.9572 9 14 6.0137 2.4702 1.0343 10 1 6.7630 2.9373 -0.1597 11 1 6.3302 3.3458 2.1911 12 1 6.4057 1.0729 1.3493 13 7 1.6672 2.0922 -1.2589 14 6 0.4119 2.6771 -1.3950 15 6 -0.4895 2.6470 -0.3393 16 6 -1.7342 3.2279 -0.4751 17 6 -2.0950 3.8448 -1.6643 18 9 -3.3160 4.4104 -1.7852 19 6 -1.2124 3.8833 -2.7243 20 6 0.0533 3.3043 -2.5980 21 6 0.9768 3.3461 -3.6917 22 7 1.7102 3.3814 -4.5584 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.5645 3.6945 0.7052 29 1 2.2954 2.1148 -1.9977 30 1 -0.2163 2.1683 0.5895 31 1 -2.4315 3.2021 0.3492 32 1 -1.4975 4.3641 -3.6483 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131899401.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:38 Heat of formation + Delta-G solvation = -2.949370 kcal Electronic energy + Delta-G solvation = -17661.721134 eV Core-core repulsion = 14729.308493 eV Total energy + Delta-G solvation = -2932.412641 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.42145 -39.52406 -36.40476 -35.83910 -32.75470 -32.15128 -30.86485 -28.71855 -26.13018 -23.90851 -23.26070 -22.10248 -20.10004 -18.80722 -17.60346 -16.67721 -15.99163 -15.78249 -15.24448 -14.73876 -14.22937 -13.99141 -13.85199 -13.40247 -13.19169 -12.91442 -12.85420 -12.57152 -12.46172 -11.92499 -11.77921 -11.26235 -11.08661 -10.95511 -10.83494 -10.63574 -10.27899 -10.10711 -9.33524 -8.87179 -8.78952 -8.78003 -6.79514 -6.69383 -4.55847 1.09499 1.74257 3.01299 3.25633 3.28161 3.29813 3.46485 4.06417 4.16352 4.24368 4.28837 4.79341 5.04577 5.12646 5.20467 5.55899 5.67610 5.75748 5.78524 5.92352 6.06782 6.25187 6.35839 6.43330 6.49887 6.50955 6.57451 6.73154 6.97138 7.09637 7.56719 7.84892 8.07346 8.07655 8.40216 8.52725 9.23660 10.65027 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.022887 B = 0.007095 C = 0.006504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.096590 B = 3945.566993 C = 4304.310348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.123 4.123 3 C 0.237 3.763 4 H 0.053 0.947 5 C -0.609 4.609 6 H 0.059 0.941 7 C 0.034 3.966 8 N -0.883 5.883 9 Si 1.069 2.931 10 H -0.286 1.286 11 H -0.280 1.280 12 H -0.285 1.285 13 N -0.694 5.694 14 C 0.274 3.726 15 C -0.178 4.178 16 C -0.074 4.074 17 C 0.003 3.997 18 F -0.151 7.151 19 C -0.052 4.052 20 C -0.127 4.127 21 C 0.270 3.730 22 N -0.442 5.442 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.277 0.723 29 H 0.391 0.609 30 H 0.147 0.853 31 H 0.133 0.867 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.960 -2.515 -0.896 9.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.162 4.162 3 C 0.137 3.863 4 H 0.071 0.929 5 C -0.648 4.648 6 H 0.077 0.923 7 C -0.176 4.176 8 N -0.515 5.515 9 Si 0.896 3.104 10 H -0.212 1.212 11 H -0.206 1.206 12 H -0.211 1.211 13 N -0.313 5.313 14 C 0.156 3.844 15 C -0.200 4.200 16 C -0.094 4.094 17 C -0.019 4.019 18 F -0.130 7.130 19 C -0.074 4.074 20 C -0.137 4.137 21 C -0.044 4.044 22 N -0.119 5.119 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.227 0.773 30 H 0.165 0.835 31 H 0.151 0.849 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.481 -1.735 -1.342 6.842 hybrid contribution -1.524 -0.694 -0.737 1.829 sum -8.005 -2.429 -2.079 8.620 Atomic orbital electron populations 1.22254 0.97530 1.00375 1.01505 1.21910 0.93884 0.99102 1.01333 1.19182 0.95875 0.88618 0.82608 0.92948 1.22111 0.90808 1.05196 1.46659 0.92315 1.26040 1.06834 0.92044 0.92694 1.70762 1.11771 1.27315 1.41652 0.83532 0.73731 0.75897 0.77210 1.21247 1.20555 1.21061 1.47376 1.10472 1.55006 1.18463 1.18227 0.87382 0.87863 0.90964 1.20840 0.93296 1.06248 0.99650 1.20998 0.96833 0.95543 0.96037 1.16939 0.82541 1.06256 0.96154 1.91430 1.41192 1.83787 1.96613 1.20634 0.91234 0.97381 0.98109 1.15150 0.93502 1.14417 0.90649 1.25454 0.93024 0.93049 0.92823 1.81194 1.09283 1.10400 1.11034 0.92849 0.92255 0.94109 0.93088 0.91735 0.91182 0.77335 0.83512 0.84943 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 8.23 37.16 0.31 -2.11 16 2 C -0.12 -2.24 5.58 -26.73 -0.15 -2.39 16 3 C 0.24 4.99 1.68 -69.09 -0.12 4.87 16 4 H 0.05 1.17 5.47 -51.93 -0.28 0.89 16 5 C -0.61 -14.93 8.49 -34.44 -0.29 -15.22 16 6 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 7 C 0.03 0.86 5.45 -17.82 -0.10 0.76 16 8 N -0.88 -23.99 13.56 55.43 0.75 -23.24 16 9 Si 1.07 23.06 29.91 -169.99 -5.08 17.98 16 10 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 13 N -0.69 -13.79 5.04 -53.06 -0.27 -14.06 16 14 C 0.27 4.82 5.52 -83.52 -0.46 4.36 16 15 C -0.18 -2.79 6.70 -39.43 -0.26 -3.05 16 16 C -0.07 -1.02 10.01 -39.47 -0.39 -1.41 16 17 C 0.00 0.04 7.28 -39.49 -0.29 -0.25 16 18 F -0.15 -2.17 17.26 2.25 0.04 -2.13 16 19 C -0.05 -0.75 9.73 -39.11 -0.38 -1.13 16 20 C -0.13 -2.11 5.76 -106.62 -0.61 -2.72 16 21 C 0.27 4.89 14.09 -22.47 -0.32 4.57 16 22 N -0.44 -8.65 18.54 41.84 0.78 -7.87 16 23 H 0.05 0.75 6.40 -51.93 -0.33 0.42 16 24 H 0.06 0.91 5.36 -51.93 -0.28 0.64 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.28 7.43 6.93 -40.82 -0.28 7.15 16 29 H 0.39 8.23 7.45 -40.82 -0.30 7.93 16 30 H 0.15 2.30 3.98 -52.49 -0.21 2.09 16 31 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 278.10 15.07 4.19 4.19 Total: -1.00 -26.16 278.10 -5.67 -31.83 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -3.01 Total: 7.02 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -3.07 Total: -13.72 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 1.26 Total: -45.17 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.08 Total: 17.98 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -26.16 -5.67 -31.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131899401.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.884 kcal (2) G-P(sol) polarization free energy of solvation -26.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds