Wall clock time and date at job start Mon Mar 30 2020 06:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47452 * 2 1 4 4 H 1.09002 * 109.46905 * 54.28806 * 3 2 1 5 5 C 1.50703 * 109.47213 * 174.28594 * 3 2 1 6 6 H 1.07999 * 119.99947 * 25.65942 * 5 3 2 7 7 C 1.37871 * 120.00057 * 205.65777 * 5 3 2 8 8 N 1.31519 * 120.00108 * 353.26858 * 7 5 3 9 9 Si 1.86804 * 120.00076 * 173.27059 * 7 5 3 10 10 H 1.48500 * 109.47248 * 89.99926 * 9 7 5 11 11 H 1.48495 * 109.46994 * 210.00183 * 9 7 5 12 12 H 1.48498 * 109.46874 * 330.00014 * 9 7 5 13 13 N 1.46496 * 109.47170 * 294.28951 * 3 2 1 14 14 C 1.39154 * 120.00528 * 84.99844 * 13 3 2 15 15 C 1.38854 * 120.14266 * 0.02562 * 14 13 3 16 16 C 1.38028 * 120.09995 * 179.97438 * 15 14 13 17 17 C 1.38744 * 120.39474 * 0.02562 * 16 15 14 18 18 F 1.35099 * 119.85521 * 180.02562 * 17 16 15 19 19 C 1.37983 * 120.29630 * 0.02562 * 17 16 15 20 20 C 1.39755 * 119.89274 * 359.68096 * 19 17 16 21 21 C 1.43197 * 120.19784 * 180.29707 * 20 19 17 22 22 N 5.67851 * 91.81899 * 306.56827 * 2 1 3 23 23 H 1.09005 * 109.47085 * 299.99975 * 1 2 3 24 24 H 1.08996 * 109.47110 * 59.99659 * 1 2 3 25 25 H 1.08995 * 109.47248 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47085 * 240.00025 * 2 1 3 27 27 H 1.08996 * 109.47110 * 120.00341 * 2 1 3 28 28 H 0.96994 * 119.99744 * 354.66505 * 8 7 5 29 29 H 0.97004 * 120.00111 * 264.99989 * 13 3 2 30 30 H 1.07999 * 119.95091 * 359.96911 * 15 14 13 31 31 H 1.07998 * 119.80566 * 180.02562 * 16 15 14 32 32 H 1.08003 * 120.05188 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5956 1.9849 0.8345 5 6 3.5404 1.4447 0.1415 6 1 4.1147 0.5895 -0.1829 7 6 4.1799 2.5386 0.6849 8 7 3.4990 3.6303 0.9572 9 14 6.0137 2.4702 1.0343 10 1 6.7630 2.9373 -0.1597 11 1 6.3302 3.3458 2.1911 12 1 6.4057 1.0729 1.3493 13 7 1.6672 2.0922 -1.2589 14 6 0.4119 2.6771 -1.3950 15 6 -0.4895 2.6470 -0.3393 16 6 -1.7342 3.2279 -0.4751 17 6 -2.0950 3.8448 -1.6643 18 9 -3.3160 4.4104 -1.7852 19 6 -1.2124 3.8833 -2.7243 20 6 0.0533 3.3043 -2.5980 21 6 0.9768 3.3461 -3.6917 22 7 1.7102 3.3814 -4.5584 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.5645 3.6945 0.7052 29 1 2.2954 2.1148 -1.9977 30 1 -0.2163 2.1683 0.5895 31 1 -2.4315 3.2021 0.3492 32 1 -1.4975 4.3641 -3.6483 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131899401.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:38 Heat of formation + Delta-G solvation = -16.530097 kcal Electronic energy + Delta-G solvation = -17662.310038 eV Core-core repulsion = 14729.308493 eV Total energy + Delta-G solvation = -2933.001545 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.59303 -40.87117 -37.91669 -37.27701 -34.53084 -33.52929 -32.14881 -30.13235 -27.73470 -25.18085 -24.94646 -23.43233 -21.54843 -20.18764 -19.24694 -18.11303 -17.37720 -17.03960 -16.44696 -16.07954 -15.75336 -15.57765 -15.30859 -14.86616 -14.69400 -14.33312 -14.18240 -14.05879 -13.75133 -13.31402 -13.20305 -12.81404 -12.64478 -12.47720 -12.18087 -12.03342 -11.94692 -11.47318 -10.88381 -10.71337 -10.51973 -10.00800 -8.70955 -8.17108 -6.52732 -0.15970 0.48951 1.53686 1.56333 1.58182 1.76797 1.90146 2.47273 2.57667 2.83469 2.91209 3.28443 3.57665 3.83136 4.07025 4.27281 4.35736 4.41626 4.43756 4.60459 4.81562 4.89946 5.08918 5.12262 5.15405 5.23080 5.25984 5.37183 5.51652 5.78742 5.91060 6.13093 6.39707 6.48174 6.60568 6.86845 7.32326 8.68073 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.022887 B = 0.007095 C = 0.006504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.096590 B = 3945.566993 C = 4304.310348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C 0.244 3.756 4 H 0.038 0.962 5 C -0.619 4.619 6 H 0.049 0.951 7 C -0.010 4.010 8 N -0.914 5.914 9 Si 1.108 2.892 10 H -0.284 1.284 11 H -0.282 1.282 12 H -0.269 1.269 13 N -0.708 5.708 14 C 0.260 3.740 15 C -0.182 4.182 16 C -0.057 4.057 17 C 0.011 3.989 18 F -0.146 7.146 19 C -0.045 4.045 20 C -0.133 4.133 21 C 0.282 3.718 22 N -0.474 5.474 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.269 0.731 29 H 0.383 0.617 30 H 0.147 0.853 31 H 0.165 0.835 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.685 -2.721 -0.648 11.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C 0.143 3.857 4 H 0.056 0.944 5 C -0.658 4.658 6 H 0.067 0.933 7 C -0.213 4.213 8 N -0.549 5.549 9 Si 0.931 3.069 10 H -0.211 1.211 11 H -0.207 1.207 12 H -0.193 1.193 13 N -0.328 5.328 14 C 0.145 3.855 15 C -0.204 4.204 16 C -0.077 4.077 17 C -0.010 4.010 18 F -0.125 7.125 19 C -0.066 4.066 20 C -0.143 4.143 21 C -0.031 4.031 22 N -0.152 5.152 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.216 0.784 30 H 0.165 0.835 31 H 0.183 0.817 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.249 -1.945 -1.102 8.547 hybrid contribution -1.143 -0.619 -0.853 1.555 sum -9.393 -2.564 -1.955 9.931 Atomic orbital electron populations 1.22156 0.94849 1.01802 1.01894 1.21821 0.96276 0.96939 1.00749 1.18978 0.93982 0.90149 0.82563 0.94406 1.22426 0.92920 1.04440 1.46005 0.93251 1.27098 1.09714 0.91889 0.92643 1.70856 1.11630 1.28349 1.44044 0.83029 0.70320 0.76637 0.76929 1.21083 1.20735 1.19337 1.46755 1.11597 1.56854 1.17547 1.18379 0.86786 0.88339 0.92042 1.20884 0.93707 1.06770 0.99067 1.21280 0.96286 0.93476 0.96689 1.17009 0.82467 1.05466 0.96094 1.91457 1.40836 1.83633 1.96580 1.20818 0.90136 0.96473 0.99214 1.15217 0.94120 1.15085 0.89908 1.25710 0.92627 0.92162 0.92584 1.81192 1.10145 1.11637 1.12224 0.91745 0.92505 0.92157 0.93876 0.92044 0.92089 0.78389 0.83534 0.81719 0.82788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 8.23 71.98 0.59 -3.65 16 2 C -0.12 -4.25 5.58 30.59 0.17 -4.08 16 3 C 0.24 10.38 1.68 44.25 0.07 10.46 16 4 H 0.04 1.72 5.47 -2.39 -0.01 1.71 16 5 C -0.62 -30.86 8.49 25.60 0.22 -30.64 16 6 H 0.05 2.49 7.82 -2.91 -0.02 2.46 16 7 C -0.01 -0.50 5.45 84.65 0.46 -0.04 16 8 N -0.91 -50.59 13.56 21.45 0.29 -50.30 16 9 Si 1.11 46.91 29.91 68.60 2.05 48.97 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 12 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 13 N -0.71 -28.38 5.04 -321.79 -1.62 -30.00 16 14 C 0.26 8.92 5.52 38.64 0.21 9.14 16 15 C -0.18 -5.35 6.70 22.37 0.15 -5.20 16 16 C -0.06 -1.38 10.01 22.34 0.22 -1.16 16 17 C 0.01 0.28 7.28 22.33 0.16 0.45 16 18 F -0.15 -3.64 17.26 44.97 0.78 -2.86 16 19 C -0.04 -1.19 9.73 22.58 0.22 -0.97 16 20 C -0.13 -4.26 5.76 -21.16 -0.12 -4.38 16 21 C 0.28 10.10 14.09 88.33 1.24 11.35 16 22 N -0.47 -18.61 18.54 19.00 0.35 -18.26 16 23 H 0.06 1.67 6.40 -2.38 -0.02 1.65 16 24 H 0.06 1.64 5.36 -2.39 -0.01 1.63 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.27 14.76 6.93 -92.71 -0.64 14.11 16 29 H 0.38 16.52 7.45 -92.71 -0.69 15.83 16 30 H 0.15 4.36 3.98 -2.91 -0.01 4.35 16 31 H 0.17 2.95 8.06 -2.91 -0.02 2.92 16 32 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -56.24 278.10 6.06 -50.18 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.61 Total: 21.00 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 3.61 Total: -18.73 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -0.98 Total: -98.56 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.78 Total: -2.86 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.05 Total: 48.97 kcal Total: -56.24 6.06 -50.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131899401.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.649 kcal (2) G-P(sol) polarization free energy of solvation -56.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds