Wall clock time and date at job start Mon Mar 30 2020 06:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47086 * 2 1 4 4 C 1.50699 * 109.46775 * 119.99535 * 2 1 3 5 5 H 1.07996 * 119.99567 * 119.99945 * 4 2 1 6 6 C 1.37877 * 120.00349 * 300.00239 * 4 2 1 7 7 N 1.31514 * 119.99891 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99940 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47349 * 59.99939 * 8 6 4 10 10 H 1.48498 * 109.46973 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47281 * 299.99415 * 8 6 4 12 12 N 1.46493 * 109.46955 * 239.99527 * 2 1 3 13 13 C 1.46497 * 120.00581 * 304.68539 * 12 2 1 14 14 C 1.39191 * 119.99601 * 124.68201 * 12 2 1 15 15 C 1.39273 * 119.90119 * 174.19704 * 14 12 2 16 16 C 1.37579 * 120.13973 * 179.97438 * 15 14 12 17 17 C 1.39864 * 119.94436 * 359.74127 * 16 15 14 18 18 C 1.43207 * 120.09000 * 180.25827 * 17 16 15 19 19 N 7.57426 * 128.61134 * 294.19409 * 2 1 3 20 20 C 1.40042 * 119.81495 * 0.51134 * 17 16 15 21 21 F 1.35095 * 120.07495 * 179.77178 * 20 17 16 22 22 C 1.37983 * 119.85342 * 359.48975 * 20 17 16 23 23 H 1.08990 * 109.47689 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47151 * 300.00267 * 1 2 3 25 25 H 1.09005 * 109.46883 * 59.99895 * 1 2 3 26 26 H 0.96996 * 119.99923 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.47162 * 270.00653 * 13 12 2 28 28 H 1.09004 * 109.46805 * 29.99993 * 13 12 2 29 29 H 1.08997 * 109.47658 * 149.99617 * 13 12 2 30 30 H 1.07998 * 119.92841 * 0.02562 * 15 14 12 31 31 H 1.07999 * 120.02545 * 180.02562 * 16 15 14 32 32 H 1.08000 * 119.96964 * 180.22948 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3223 -1.1194 4.0080 9 1 3.8073 -1.1188 4.0078 10 1 1.8277 -0.4190 5.2204 11 1 1.8278 -2.5196 4.0083 12 7 2.0183 -0.6907 -1.1961 13 6 1.5818 -2.0598 -1.4809 14 6 2.8970 -0.0460 -2.0619 15 6 3.4544 -0.7429 -3.1312 16 6 4.3231 -0.1104 -3.9904 17 6 4.6430 1.2368 -3.7931 18 6 5.5425 1.8998 -4.6887 19 7 6.2566 2.4256 -5.3986 20 6 4.0853 1.9341 -2.7142 21 9 4.3943 3.2343 -2.5160 22 6 3.2151 1.2919 -1.8573 23 1 -0.3634 -1.0275 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7094 1.1620 3.4843 27 1 2.2702 -2.7650 -1.0151 28 1 0.5795 -2.2123 -1.0806 29 1 1.5708 -2.2209 -2.5589 30 1 3.2037 -1.7818 -3.2866 31 1 4.7540 -0.6524 -4.8191 32 1 2.7811 1.8289 -1.0269 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135254262.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:43 Heat of formation + Delta-G solvation = 16.815936 kcal Electronic energy + Delta-G solvation = -17358.583121 eV Core-core repulsion = 14427.027569 eV Total energy + Delta-G solvation = -2931.555553 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.69927 -39.34254 -36.88755 -35.62263 -33.16304 -30.76254 -30.47325 -28.77115 -26.15812 -25.35219 -23.14782 -21.93536 -20.08381 -18.79406 -17.06839 -16.75394 -16.05946 -15.59906 -15.45109 -14.81037 -13.99479 -13.91562 -13.78462 -13.56201 -13.36126 -13.01982 -12.71093 -12.38485 -11.91672 -11.79278 -11.70552 -11.57770 -11.27571 -11.01571 -10.90340 -10.68651 -10.35603 -10.19454 -9.64402 -9.06857 -8.61169 -8.61059 -6.86561 -6.23746 -4.35299 1.20798 1.54274 2.93616 3.18240 3.24315 3.24464 3.28163 3.66747 4.10325 4.24048 4.26521 4.48746 4.97602 5.06344 5.35846 5.48647 5.64746 5.79435 5.92205 6.06780 6.16486 6.19871 6.44602 6.47490 6.55524 6.68334 6.78543 6.96155 7.14769 7.46170 7.64201 7.78912 7.85971 8.01156 8.17372 8.69142 9.32742 10.78630 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.028281 B = 0.005930 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.818504 B = 4720.771977 C = 5066.210100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.256 3.744 3 H 0.057 0.943 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.583 5.583 13 C 0.090 3.910 14 C 0.292 3.708 15 C -0.230 4.230 16 C 0.009 3.991 17 C -0.167 4.167 18 C 0.275 3.725 19 N -0.452 5.452 20 C 0.198 3.802 21 F -0.135 7.135 22 C -0.243 4.243 23 H 0.034 0.966 24 H 0.096 0.904 25 H 0.015 0.985 26 H 0.266 0.734 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.334 -4.207 -7.518 8.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.156 3.844 3 H 0.075 0.925 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.281 5.281 13 C -0.053 4.053 14 C 0.177 3.823 15 C -0.253 4.253 16 C -0.012 4.012 17 C -0.175 4.175 18 C -0.038 4.038 19 N -0.129 5.129 20 C 0.175 3.825 21 F -0.113 7.113 22 C -0.266 4.266 23 H 0.053 0.947 24 H 0.115 0.885 25 H 0.034 0.966 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.145 -3.362 -8.244 8.977 hybrid contribution 0.057 -0.449 1.341 1.415 sum 1.203 -3.811 -6.903 7.977 Atomic orbital electron populations 1.22145 0.97768 0.99900 1.01202 1.19166 0.91413 0.93650 0.80134 0.92515 1.21283 1.32287 1.13436 0.90001 0.92080 1.24886 0.94687 0.94924 0.99075 1.69833 1.35963 1.22454 1.24287 0.86517 0.79344 0.79625 0.81754 1.20103 1.21094 1.20166 1.47505 1.43390 1.13846 1.23397 1.21618 1.00900 0.83187 0.99583 1.17870 0.86391 0.90216 0.87809 1.20574 1.05002 1.01050 0.98715 1.20560 0.93222 0.90713 0.96748 1.15574 1.07912 0.95076 0.98939 1.25490 0.92466 0.93077 0.92783 1.81163 1.12001 1.08510 1.11216 1.17246 0.94298 0.77620 0.93298 1.91499 1.91329 1.33938 1.94524 1.20680 1.06200 0.95094 1.04655 0.94718 0.88541 0.96572 0.92368 0.93105 0.90680 0.92382 0.84938 0.85042 0.83073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.85 37.16 0.33 -2.83 16 2 C 0.26 5.53 2.57 -69.08 -0.18 5.35 16 3 H 0.06 1.32 5.28 -51.93 -0.27 1.05 16 4 C -0.53 -12.87 8.44 -34.44 -0.29 -13.16 16 5 H 0.06 1.49 7.79 -52.49 -0.41 1.08 16 6 C 0.07 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -22.85 11.32 55.43 0.63 -22.23 16 8 Si 0.90 19.66 29.54 -169.99 -5.02 14.64 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 N -0.58 -10.41 2.87 -173.33 -0.50 -10.90 16 13 C 0.09 1.32 9.50 59.85 0.57 1.89 16 14 C 0.29 4.80 6.54 -83.84 -0.55 4.25 16 15 C -0.23 -3.05 9.13 -39.44 -0.36 -3.41 16 16 C 0.01 0.11 9.75 -39.21 -0.38 -0.27 16 17 C -0.17 -2.46 5.75 -106.68 -0.61 -3.08 16 18 C 0.28 4.36 14.97 -22.47 -0.34 4.03 16 19 N -0.45 -7.85 18.54 41.84 0.78 -7.08 16 20 C 0.20 3.22 7.27 -39.00 -0.28 2.93 16 21 F -0.13 -2.29 16.81 2.25 0.04 -2.25 16 22 C -0.24 -4.16 9.27 -39.38 -0.36 -4.52 16 23 H 0.03 0.68 6.52 -51.93 -0.34 0.34 16 24 H 0.10 2.26 6.07 -51.93 -0.32 1.94 16 25 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.12 6.19 -51.93 -0.32 0.79 16 29 H 0.06 0.67 6.44 -51.93 -0.33 0.33 16 30 H 0.13 1.46 6.28 -52.49 -0.33 1.13 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.15 2.80 5.71 -52.49 -0.30 2.50 16 LS Contribution 280.66 15.07 4.23 4.23 Total: -1.00 -26.00 280.66 -5.43 -31.42 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -3.02 Total: -0.60 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -2.55 Total: -7.23 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.91 Total: -40.21 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -26.00 -5.43 -31.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135254262.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.239 kcal (2) G-P(sol) polarization free energy of solvation -25.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds