Wall clock time and date at job start Mon Mar 30 2020 06:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47086 * 2 1 4 4 C 1.50699 * 109.46775 * 119.99535 * 2 1 3 5 5 H 1.07996 * 119.99567 * 119.99945 * 4 2 1 6 6 C 1.37877 * 120.00349 * 300.00239 * 4 2 1 7 7 N 1.31514 * 119.99891 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99940 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47349 * 59.99939 * 8 6 4 10 10 H 1.48498 * 109.46973 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47281 * 299.99415 * 8 6 4 12 12 N 1.46493 * 109.46955 * 239.99527 * 2 1 3 13 13 C 1.46497 * 120.00581 * 304.68539 * 12 2 1 14 14 C 1.39191 * 119.99601 * 124.68201 * 12 2 1 15 15 C 1.39273 * 119.90119 * 174.19704 * 14 12 2 16 16 C 1.37579 * 120.13973 * 179.97438 * 15 14 12 17 17 C 1.39864 * 119.94436 * 359.74127 * 16 15 14 18 18 C 1.43207 * 120.09000 * 180.25827 * 17 16 15 19 19 N 7.57426 * 128.61134 * 294.19409 * 2 1 3 20 20 C 1.40042 * 119.81495 * 0.51134 * 17 16 15 21 21 F 1.35095 * 120.07495 * 179.77178 * 20 17 16 22 22 C 1.37983 * 119.85342 * 359.48975 * 20 17 16 23 23 H 1.08990 * 109.47689 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47151 * 300.00267 * 1 2 3 25 25 H 1.09005 * 109.46883 * 59.99895 * 1 2 3 26 26 H 0.96996 * 119.99923 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.47162 * 270.00653 * 13 12 2 28 28 H 1.09004 * 109.46805 * 29.99993 * 13 12 2 29 29 H 1.08997 * 109.47658 * 149.99617 * 13 12 2 30 30 H 1.07998 * 119.92841 * 0.02562 * 15 14 12 31 31 H 1.07999 * 120.02545 * 180.02562 * 16 15 14 32 32 H 1.08000 * 119.96964 * 180.22948 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3223 -1.1194 4.0080 9 1 3.8073 -1.1188 4.0078 10 1 1.8277 -0.4190 5.2204 11 1 1.8278 -2.5196 4.0083 12 7 2.0183 -0.6907 -1.1961 13 6 1.5818 -2.0598 -1.4809 14 6 2.8970 -0.0460 -2.0619 15 6 3.4544 -0.7429 -3.1312 16 6 4.3231 -0.1104 -3.9904 17 6 4.6430 1.2368 -3.7931 18 6 5.5425 1.8998 -4.6887 19 7 6.2566 2.4256 -5.3986 20 6 4.0853 1.9341 -2.7142 21 9 4.3943 3.2343 -2.5160 22 6 3.2151 1.2919 -1.8573 23 1 -0.3634 -1.0275 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7094 1.1620 3.4843 27 1 2.2702 -2.7650 -1.0151 28 1 0.5795 -2.2123 -1.0806 29 1 1.5708 -2.2209 -2.5589 30 1 3.2037 -1.7818 -3.2866 31 1 4.7540 -0.6524 -4.8191 32 1 2.7811 1.8289 -1.0269 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135254262.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:43 Heat of formation + Delta-G solvation = 4.326492 kcal Electronic energy + Delta-G solvation = -17359.124704 eV Core-core repulsion = 14427.027569 eV Total energy + Delta-G solvation = -2932.097136 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.02302 -40.59395 -38.23448 -36.98931 -34.86264 -32.02798 -31.93883 -30.12339 -27.49120 -27.11654 -24.47344 -23.19998 -21.59493 -20.03425 -18.50917 -18.31251 -17.51123 -16.90421 -16.77028 -16.48908 -15.36464 -15.27803 -15.10369 -14.79199 -14.66500 -14.41260 -14.16099 -13.71437 -13.39989 -13.16077 -13.00458 -12.91047 -12.79235 -12.69128 -12.52805 -12.20573 -12.09284 -11.69380 -11.19079 -10.55662 -10.47975 -9.81099 -8.31295 -7.98986 -6.28185 -0.02484 0.38055 1.44081 1.46175 1.52248 1.66668 2.01814 2.30968 2.49714 2.90824 3.00410 3.15214 3.24439 3.86171 4.19933 4.32694 4.51017 4.61827 4.73170 4.79692 4.94771 4.99279 5.05999 5.10315 5.16985 5.31757 5.33346 5.46426 5.65251 5.80932 5.92123 6.17417 6.40551 6.53132 6.77892 6.85403 7.42924 8.89081 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.028281 B = 0.005930 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.818504 B = 4720.771977 C = 5066.210100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.260 3.740 3 H 0.032 0.968 4 C -0.537 4.537 5 H 0.057 0.943 6 C 0.022 3.978 7 N -0.914 5.914 8 Si 0.953 3.047 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.268 1.268 12 N -0.595 5.595 13 C 0.088 3.912 14 C 0.278 3.722 15 C -0.212 4.212 16 C 0.029 3.971 17 C -0.163 4.163 18 C 0.290 3.710 19 N -0.478 5.478 20 C 0.188 3.812 21 F -0.145 7.145 22 C -0.261 4.261 23 H 0.043 0.957 24 H 0.067 0.933 25 H 0.028 0.972 26 H 0.264 0.736 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.167 0.833 31 H 0.174 0.826 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.922 -6.323 -9.109 11.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.158 3.842 3 H 0.049 0.951 4 C -0.575 4.575 5 H 0.075 0.925 6 C -0.178 4.178 7 N -0.552 5.552 8 Si 0.779 3.221 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.193 1.193 12 N -0.295 5.295 13 C -0.054 4.054 14 C 0.164 3.836 15 C -0.234 4.234 16 C 0.007 3.993 17 C -0.170 4.170 18 C -0.023 4.023 19 N -0.155 5.155 20 C 0.165 3.835 21 F -0.124 7.124 22 C -0.285 4.285 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.047 0.953 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.184 0.816 31 H 0.192 0.808 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.747 -5.489 -9.863 11.422 hybrid contribution -0.084 0.232 1.762 1.779 sum 1.663 -5.257 -8.101 9.800 Atomic orbital electron populations 1.21949 0.97412 1.00122 1.00347 1.18793 0.91625 0.92571 0.81199 0.95081 1.21583 1.31654 1.13110 0.91195 0.92486 1.25561 0.95090 0.95583 1.01552 1.69960 1.37166 1.23666 1.24453 0.85680 0.78496 0.78959 0.78916 1.20330 1.21284 1.19330 1.47301 1.44458 1.15001 1.22767 1.21798 1.00355 0.81251 1.02028 1.18134 0.86682 0.89986 0.88759 1.20888 1.03554 1.02208 0.96785 1.20988 0.91785 0.89405 0.97080 1.15699 1.07386 0.96004 0.97957 1.25556 0.91999 0.92458 0.92288 1.81186 1.12926 1.09181 1.12257 1.17358 0.94762 0.77356 0.93978 1.91469 1.91463 1.34762 1.94700 1.20553 1.07297 0.96001 1.04616 0.93850 0.91432 0.95290 0.92681 0.93021 0.91414 0.88586 0.81592 0.80840 0.85718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.88 8.85 71.98 0.64 -5.24 16 2 C 0.26 11.37 2.57 44.25 0.11 11.49 16 3 H 0.03 1.53 5.28 -2.39 -0.01 1.52 16 4 C -0.54 -26.16 8.44 25.60 0.22 -25.95 16 5 H 0.06 2.76 7.79 -2.91 -0.02 2.74 16 6 C 0.02 1.12 5.30 84.65 0.45 1.57 16 7 N -0.91 -48.31 11.32 21.45 0.24 -48.06 16 8 Si 0.95 40.48 29.54 68.60 2.03 42.51 16 9 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 10 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 12 N -0.60 -20.51 2.87 -702.29 -2.02 -22.53 16 13 C 0.09 2.31 9.50 127.77 1.21 3.53 16 14 C 0.28 8.65 6.54 38.41 0.25 8.90 16 15 C -0.21 -4.71 9.13 22.36 0.20 -4.50 16 16 C 0.03 0.58 9.75 22.51 0.22 0.80 16 17 C -0.16 -4.40 5.75 -21.20 -0.12 -4.52 16 18 C 0.29 8.58 14.97 88.33 1.32 9.90 16 19 N -0.48 -15.82 18.54 19.01 0.35 -15.46 16 20 C 0.19 6.02 7.27 22.65 0.16 6.19 16 21 F -0.15 -5.04 16.81 44.97 0.76 -4.28 16 22 C -0.26 -9.01 9.27 22.40 0.21 -8.81 16 23 H 0.04 1.69 6.52 -2.39 -0.02 1.68 16 24 H 0.07 3.25 6.07 -2.39 -0.01 3.23 16 25 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.87 6.19 -2.38 -0.01 1.86 16 29 H 0.10 1.76 6.44 -2.39 -0.02 1.75 16 30 H 0.17 2.64 6.28 -2.91 -0.02 2.62 16 31 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.13 4.95 5.71 -2.91 -0.02 4.94 16 Total: -1.00 -57.07 280.66 7.39 -49.68 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: 1.16 Total: 4.80 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 4.88 Total: -6.65 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -1.42 Total: -86.05 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.76 Total: -4.28 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -57.07 7.39 -49.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135254262.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.003 kcal (2) G-P(sol) polarization free energy of solvation -57.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds