Wall clock time and date at job start Mon Mar 30 2020 06:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47547 * 2 1 4 4 C 1.50704 * 109.46998 * 240.00145 * 2 1 3 5 5 H 1.07999 * 119.99939 * 245.41505 * 4 2 1 6 6 C 1.37874 * 120.00019 * 65.41640 * 4 2 1 7 7 N 1.31520 * 120.00092 * 5.19678 * 6 4 2 8 8 Si 1.86797 * 119.99972 * 185.20408 * 6 4 2 9 9 H 1.48502 * 109.47512 * 94.99523 * 8 6 4 10 10 H 1.48506 * 109.47080 * 214.99619 * 8 6 4 11 11 H 1.48502 * 109.47053 * 334.99150 * 8 6 4 12 12 N 1.46504 * 109.47380 * 120.00319 * 2 1 3 13 13 C 1.46506 * 119.99961 * 64.73090 * 12 2 1 14 14 C 1.39180 * 119.99887 * 244.73202 * 12 2 1 15 15 C 1.39263 * 119.90838 * 354.25830 * 14 12 2 16 16 C 1.37569 * 120.14554 * 180.02562 * 15 14 12 17 17 C 1.39868 * 119.94870 * 0.25207 * 16 15 14 18 18 C 1.43192 * 120.09545 * 179.70583 * 17 16 15 19 19 N 7.57166 * 121.63879 * 65.18897 * 2 1 3 20 20 C 1.40043 * 119.80442 * 359.44669 * 17 16 15 21 21 F 1.35104 * 120.07001 * 180.25509 * 20 17 16 22 22 C 1.37974 * 119.86108 * 0.57407 * 20 17 16 23 23 H 1.09003 * 109.46905 * 294.93327 * 1 2 3 24 24 H 1.09001 * 109.47385 * 54.93488 * 1 2 3 25 25 H 1.09006 * 109.47139 * 174.93716 * 1 2 3 26 26 H 0.97000 * 120.00193 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.46640 * 269.99996 * 13 12 2 28 28 H 1.09004 * 109.46825 * 30.00266 * 13 12 2 29 29 H 1.09001 * 109.46650 * 150.00371 * 13 12 2 30 30 H 1.08002 * 119.92588 * 359.97376 * 15 14 12 31 31 H 1.08006 * 120.02632 * 179.97438 * 16 15 14 32 32 H 1.08000 * 119.97785 * 179.72277 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5792 -1.6367 -1.1339 6 6 1.7938 -0.1778 -2.4797 7 7 1.2185 0.9994 -2.5937 8 14 2.2873 -1.1283 -4.0101 9 1 1.1230 -1.9039 -4.5082 10 1 2.7349 -0.1782 -5.0600 11 1 3.3966 -2.0584 -3.6788 12 7 2.0184 -0.6907 1.1961 13 6 1.7520 -2.1199 1.3768 14 6 2.7355 0.0110 2.1608 15 6 3.0911 1.3380 1.9331 16 6 3.8003 2.0360 2.8830 17 6 4.1698 1.4103 4.0781 18 6 4.9134 2.1319 5.0664 19 7 5.5018 2.7050 5.8513 20 6 3.8056 0.0777 4.3076 21 9 4.1552 -0.5304 5.4623 22 6 3.0947 -0.6150 3.3493 23 1 -0.3633 0.4332 0.9319 24 1 -0.3634 0.5904 -0.8411 25 1 -0.3634 -1.0237 -0.0907 26 1 1.0504 1.3740 -3.4726 27 1 0.8097 -2.2493 1.9093 28 1 1.6880 -2.6036 0.4021 29 1 2.5600 -2.5700 1.9535 30 1 2.8102 1.8200 1.0083 31 1 4.0754 3.0650 2.7042 32 1 2.8167 -1.6442 3.5225 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135254281.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:45 Heat of formation + Delta-G solvation = 14.105451 kcal Electronic energy + Delta-G solvation = -17292.822333 eV Core-core repulsion = 14361.149245 eV Total energy + Delta-G solvation = -2931.673088 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.81458 -39.34361 -36.87516 -35.60912 -33.17954 -30.88852 -30.20143 -29.01589 -26.08688 -25.40482 -22.98834 -22.08555 -20.18502 -18.80514 -16.99263 -16.72954 -16.25082 -15.57132 -15.39964 -14.94633 -14.01138 -13.91078 -13.84748 -13.40306 -13.37606 -13.08014 -12.71095 -12.27085 -11.94486 -11.84100 -11.83458 -11.54311 -11.20784 -11.02238 -10.97289 -10.81529 -10.41011 -10.21086 -9.58781 -9.09468 -8.64494 -8.63776 -6.86503 -6.29056 -4.37440 1.19623 1.53770 2.93327 3.14593 3.23371 3.24404 3.27407 3.66471 4.10640 4.22880 4.25330 4.42113 4.98371 5.03380 5.40742 5.54656 5.61298 5.76985 5.92081 6.13017 6.17466 6.22839 6.41070 6.50256 6.56039 6.65835 6.76663 6.95769 7.15578 7.36176 7.58747 7.78369 7.80591 7.95605 8.18584 8.67002 9.29904 10.76258 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.033080 B = 0.005480 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.233973 B = 5108.035533 C = 5414.360020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.256 3.744 3 H 0.064 0.936 4 C -0.534 4.534 5 H 0.063 0.937 6 C 0.070 3.930 7 N -0.886 5.886 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.582 5.582 13 C 0.086 3.914 14 C 0.291 3.709 15 C -0.210 4.210 16 C 0.007 3.993 17 C -0.165 4.165 18 C 0.275 3.725 19 N -0.452 5.452 20 C 0.197 3.803 21 F -0.138 7.138 22 C -0.261 4.261 23 H 0.018 0.982 24 H 0.079 0.921 25 H 0.035 0.965 26 H 0.266 0.734 27 H 0.044 0.956 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.148 0.852 31 H 0.134 0.866 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.147 -2.779 6.048 6.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.156 3.844 3 H 0.082 0.918 4 C -0.573 4.573 5 H 0.082 0.918 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.280 5.280 13 C -0.058 4.058 14 C 0.176 3.824 15 C -0.232 4.232 16 C -0.015 4.015 17 C -0.173 4.173 18 C -0.038 4.038 19 N -0.128 5.128 20 C 0.174 3.826 21 F -0.116 7.116 22 C -0.286 4.286 23 H 0.037 0.963 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.166 0.834 31 H 0.152 0.848 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.834 -1.940 6.925 7.240 hybrid contribution 0.005 -0.917 -1.052 1.396 sum 0.838 -2.857 5.873 6.585 Atomic orbital electron populations 1.22071 0.98097 1.00363 0.99775 1.19175 0.90948 0.94161 0.80138 0.91810 1.21282 1.36736 1.09097 0.90152 0.91848 1.24878 0.94739 0.94721 0.99067 1.69903 1.42193 1.15796 1.24447 0.86484 0.78828 0.79778 0.82401 1.20554 1.21012 1.19780 1.47521 1.52047 1.08430 1.20017 1.21681 0.99460 0.81748 1.02874 1.17908 0.86538 0.90960 0.87032 1.20933 1.06201 0.94006 1.02099 1.20669 0.92410 0.98918 0.89516 1.15588 1.13040 0.92721 0.95954 1.25490 0.92497 0.93189 0.92660 1.81168 1.12033 1.09374 1.10275 1.17194 0.94730 0.89079 0.81552 1.91487 1.89874 1.83181 1.47055 1.20352 1.11331 1.02089 0.94818 0.96328 0.90177 0.94600 0.92421 0.93714 0.89777 0.92403 0.83430 0.84795 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.97 37.16 0.33 -2.61 16 2 C 0.26 5.38 2.44 -69.08 -0.17 5.21 16 3 H 0.06 1.43 5.26 -51.93 -0.27 1.16 16 4 C -0.53 -12.59 8.00 -34.44 -0.28 -12.87 16 5 H 0.06 1.50 6.81 -52.49 -0.36 1.14 16 6 C 0.07 1.70 5.29 -17.82 -0.09 1.60 16 7 N -0.89 -22.42 11.99 55.43 0.66 -21.76 16 8 Si 0.90 19.24 29.54 -169.99 -5.02 14.22 16 9 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 12 N -0.58 -10.35 2.88 -173.31 -0.50 -10.85 16 13 C 0.09 1.29 9.31 59.85 0.56 1.85 16 14 C 0.29 4.75 6.54 -83.84 -0.55 4.21 16 15 C -0.21 -3.30 9.29 -39.44 -0.37 -3.66 16 16 C 0.01 0.09 9.74 -39.22 -0.38 -0.29 16 17 C -0.17 -2.43 5.75 -106.69 -0.61 -3.04 16 18 C 0.28 4.35 14.97 -22.47 -0.34 4.02 16 19 N -0.45 -7.84 18.54 41.84 0.78 -7.06 16 20 C 0.20 2.92 7.27 -39.00 -0.28 2.64 16 21 F -0.14 -2.07 16.81 2.25 0.04 -2.03 16 22 C -0.26 -3.83 9.11 -39.38 -0.36 -4.19 16 23 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 24 H 0.08 1.81 6.85 -51.93 -0.36 1.45 16 25 H 0.03 0.70 7.94 -51.93 -0.41 0.29 16 26 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.36 6.57 -51.93 -0.34 1.01 16 29 H 0.06 0.75 6.43 -51.93 -0.33 0.41 16 30 H 0.15 2.47 5.71 -52.49 -0.30 2.17 16 31 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 32 H 0.14 1.79 6.28 -52.49 -0.33 1.46 16 LS Contribution 282.25 15.07 4.25 4.25 Total: -1.00 -25.26 282.25 -5.43 -30.69 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -3.11 Total: -0.33 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -2.54 Total: -7.14 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.94 Total: -39.67 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -25.26 -5.43 -30.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135254281.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.800 kcal (2) G-P(sol) polarization free energy of solvation -25.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds