Wall clock time and date at job start Mon Mar 30 2020 06:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30587 * 1 3 3 Si 1.86801 * 119.99838 * 2 1 4 4 H 1.48505 * 109.46994 * 239.99553 * 3 2 1 5 5 H 1.48494 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46851 * 120.00101 * 3 2 1 7 7 C 1.40345 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.40190 * 120.00423 * 0.02562 * 7 2 1 10 10 N 1.32468 * 125.29909 * 359.97438 * 9 7 2 11 11 C 1.33972 * 109.77694 * 180.02562 * 10 9 7 12 12 C 1.40540 * 133.19506 * 179.97438 * 11 10 9 13 13 C 1.36357 * 119.84760 * 180.02562 * 12 11 10 14 14 C 1.39043 * 120.75990 * 359.97438 * 13 12 11 15 15 C 1.37962 * 120.57274 * 0.02562 * 14 13 12 16 16 C 1.38725 * 119.76621 * 359.70873 * 15 14 13 17 17 N 1.37850 * 125.30647 * 179.97438 * 9 7 2 18 18 C 1.46499 * 126.53633 * 359.95886 * 17 9 7 19 19 C 1.53000 * 109.46840 * 90.02950 * 18 17 9 20 20 C 1.53001 * 109.46886 * 180.02562 * 19 18 17 21 21 F 1.39901 * 109.47059 * 180.02562 * 20 19 18 22 22 H 0.97005 * 119.99754 * 0.02562 * 1 2 3 23 23 H 1.07993 * 120.07700 * 359.97438 * 12 11 10 24 24 H 1.07999 * 119.61660 * 180.02562 * 13 12 11 25 25 H 1.08003 * 119.71010 * 180.02562 * 14 13 12 26 26 H 1.08002 * 120.11421 * 179.97438 * 15 14 13 27 27 H 1.09002 * 109.47391 * 330.02620 * 18 17 9 28 28 H 1.09001 * 109.46813 * 210.02676 * 18 17 9 29 29 H 1.09001 * 109.47194 * 299.99493 * 19 18 17 30 30 H 1.08992 * 109.47399 * 59.99666 * 19 18 17 31 31 H 1.09001 * 109.47109 * 299.99380 * 20 19 18 32 32 H 1.09002 * 109.47508 * 59.99571 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2398 1.6178 0.0000 4 1 3.0937 1.6964 -1.2125 5 1 1.2749 2.7464 -0.0006 6 1 3.0936 1.6964 1.2125 7 6 2.0076 -1.2154 0.0005 8 1 3.0876 -1.2154 0.0001 9 6 1.3067 -2.4296 0.0005 10 7 -0.0123 -2.5520 0.0005 11 6 -0.3472 -3.8491 0.0011 12 6 -1.5797 -4.5245 0.0018 13 6 -1.6066 -5.8878 0.0028 14 6 -0.4260 -6.6223 0.0026 15 6 0.7973 -5.9844 0.0019 16 6 0.8512 -4.5982 -0.0047 17 7 1.8826 -3.6820 0.0005 18 6 3.3164 -3.9826 -0.0003 19 6 3.8163 -4.0875 1.4419 20 6 5.3139 -4.4008 1.4411 21 9 5.7709 -4.4973 2.7598 22 1 -0.4850 0.8401 -0.0004 23 1 -2.5034 -3.9650 0.0024 24 1 -2.5558 -6.4029 0.0029 25 1 -0.4670 -7.7015 0.0030 26 1 1.7097 -6.5623 0.0022 27 1 3.8544 -3.1860 -0.5143 28 1 3.4891 -4.9281 -0.5144 29 1 3.6436 -3.1420 1.9560 30 1 3.2784 -4.8840 1.9559 31 1 5.4870 -5.3462 0.9269 32 1 5.8516 -3.6040 0.9272 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161076445.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:17 Heat of formation + Delta-G solvation = 1.503536 kcal Electronic energy + Delta-G solvation = -17535.153054 eV Core-core repulsion = 14602.933505 eV Total energy + Delta-G solvation = -2932.219548 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.52237 -40.42792 -36.25939 -34.56824 -33.43432 -31.13576 -29.14756 -28.58160 -25.89333 -25.24044 -21.90482 -21.37430 -20.68451 -19.48223 -17.06709 -16.45795 -16.19632 -15.94099 -15.46129 -14.88937 -14.73080 -14.06939 -13.74768 -13.67209 -12.90590 -12.76059 -12.69857 -11.95198 -11.62539 -11.46442 -11.40765 -11.12426 -10.96635 -10.64782 -10.56753 -10.50347 -10.36193 -10.22973 -9.39241 -9.03877 -7.94562 -7.28203 -6.90578 -6.71285 -4.67379 2.22223 2.67034 2.97840 2.99486 3.01369 3.71597 3.93573 4.09701 4.80412 4.83184 4.98728 5.00396 5.22693 5.30907 5.49385 5.61896 5.71141 5.82836 5.88637 6.00587 6.07311 6.32383 6.43618 6.51488 6.68937 6.82827 6.95492 7.21791 7.42678 7.58396 7.68505 7.87263 7.93449 8.27693 8.59042 8.96735 9.90912 10.17639 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.013178 B = 0.010256 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.179806 B = 2729.436247 C = 4669.797472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.077 3.923 3 Si 0.917 3.083 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.440 4.440 8 H 0.086 0.914 9 C 0.420 3.580 10 N -0.536 5.536 11 C 0.110 3.890 12 C -0.129 4.129 13 C -0.123 4.123 14 C -0.182 4.182 15 C -0.103 4.103 16 C -0.006 4.006 17 N -0.539 5.539 18 C 0.137 3.863 19 C -0.171 4.171 20 C 0.067 3.933 21 F -0.221 7.221 22 H 0.280 0.720 23 H 0.108 0.892 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.624 -4.768 -0.107 8.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.151 4.151 3 Si 0.741 3.259 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.478 4.478 8 H 0.104 0.896 9 C 0.184 3.816 10 N -0.259 5.259 11 C -0.017 4.017 12 C -0.151 4.151 13 C -0.143 4.143 14 C -0.203 4.203 15 C -0.124 4.124 16 C -0.113 4.113 17 N -0.235 5.235 18 C 0.012 3.988 19 C -0.210 4.210 20 C 0.011 3.989 21 F -0.202 7.202 22 H 0.092 0.908 23 H 0.126 0.874 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.113 0.887 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.987 -3.965 -0.086 7.181 hybrid contribution 1.025 -0.033 0.082 1.029 sum 7.012 -3.998 -0.004 8.071 Atomic orbital electron populations 1.69963 1.07207 1.28781 1.27705 1.25862 0.94928 1.00794 0.93498 0.86225 0.79913 0.79884 0.79904 1.18834 1.19938 1.18802 1.18452 0.93943 0.87452 1.47924 0.89556 1.20458 0.87220 0.83427 0.90484 1.71400 1.09061 1.12835 1.32649 1.19574 0.92060 0.91504 0.98602 1.19785 0.95037 0.93194 1.07038 1.20222 0.96956 0.93516 1.03645 1.20295 0.91876 0.97799 1.10310 1.19588 0.97074 0.90253 1.05522 1.18877 0.89855 0.91480 1.11092 1.45454 1.03544 1.06346 1.68198 1.21064 0.80940 1.01517 0.95248 1.22594 0.94453 1.04536 0.99428 1.21902 0.95077 1.02859 0.79033 1.92753 1.90353 1.97831 1.39271 0.90842 0.87385 0.87794 0.87839 0.88677 0.89685 0.91167 0.89681 0.90741 0.90972 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.80 11.85 55.57 0.66 -18.14 16 2 C 0.08 1.87 5.50 -17.29 -0.10 1.78 16 3 Si 0.92 17.65 29.56 -169.99 -5.03 12.62 16 4 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 5 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 6 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.44 -10.99 8.99 -38.06 -0.34 -11.34 16 8 H 0.09 1.92 7.10 -52.48 -0.37 1.55 16 9 C 0.42 11.12 7.41 -155.68 -1.15 9.97 16 10 N -0.54 -15.32 9.33 -10.31 -0.10 -15.41 16 11 C 0.11 2.87 7.21 -84.89 -0.61 2.26 16 12 C -0.13 -2.96 10.07 -39.39 -0.40 -3.36 16 13 C -0.12 -2.42 9.96 -39.96 -0.40 -2.81 16 14 C -0.18 -3.46 10.04 -39.38 -0.40 -3.86 16 15 C -0.10 -2.09 10.04 -39.50 -0.40 -2.48 16 16 C -0.01 -0.14 6.88 -83.75 -0.58 -0.71 16 17 N -0.54 -12.32 2.86 -113.48 -0.32 -12.65 16 18 C 0.14 2.33 5.90 -4.04 -0.02 2.31 16 19 C -0.17 -2.66 5.99 -26.73 -0.16 -2.82 16 20 C 0.07 0.81 7.55 37.16 0.28 1.09 16 21 F -0.22 -3.24 17.36 2.25 0.04 -3.20 16 22 H 0.28 6.66 8.29 -40.82 -0.34 6.32 16 23 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 24 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 25 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 26 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 27 H 0.08 1.35 7.32 -51.93 -0.38 0.97 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 283.48 15.07 4.27 4.27 Total: -1.00 -30.29 283.48 -8.44 -38.73 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -3.69 Total: 3.77 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -4.27 Total: -9.98 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.24 Total: -46.20 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.04 Total: -3.20 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.29 -8.44 -38.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161076445.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.233 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds