Wall clock time and date at job start Mon Mar 30 2020 06:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30587 * 1 3 3 Si 1.86801 * 119.99838 * 2 1 4 4 H 1.48505 * 109.46994 * 239.99553 * 3 2 1 5 5 H 1.48494 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46851 * 120.00101 * 3 2 1 7 7 C 1.40345 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.40190 * 120.00423 * 0.02562 * 7 2 1 10 10 N 1.32468 * 125.29909 * 359.97438 * 9 7 2 11 11 C 1.33972 * 109.77694 * 180.02562 * 10 9 7 12 12 C 1.40540 * 133.19506 * 179.97438 * 11 10 9 13 13 C 1.36357 * 119.84760 * 180.02562 * 12 11 10 14 14 C 1.39043 * 120.75990 * 359.97438 * 13 12 11 15 15 C 1.37962 * 120.57274 * 0.02562 * 14 13 12 16 16 C 1.38725 * 119.76621 * 359.70873 * 15 14 13 17 17 N 1.37850 * 125.30647 * 179.97438 * 9 7 2 18 18 C 1.46499 * 126.53633 * 359.95886 * 17 9 7 19 19 C 1.53000 * 109.46840 * 90.02950 * 18 17 9 20 20 C 1.53001 * 109.46886 * 180.02562 * 19 18 17 21 21 F 1.39901 * 109.47059 * 180.02562 * 20 19 18 22 22 H 0.97005 * 119.99754 * 0.02562 * 1 2 3 23 23 H 1.07993 * 120.07700 * 359.97438 * 12 11 10 24 24 H 1.07999 * 119.61660 * 180.02562 * 13 12 11 25 25 H 1.08003 * 119.71010 * 180.02562 * 14 13 12 26 26 H 1.08002 * 120.11421 * 179.97438 * 15 14 13 27 27 H 1.09002 * 109.47391 * 330.02620 * 18 17 9 28 28 H 1.09001 * 109.46813 * 210.02676 * 18 17 9 29 29 H 1.09001 * 109.47194 * 299.99493 * 19 18 17 30 30 H 1.08992 * 109.47399 * 59.99666 * 19 18 17 31 31 H 1.09001 * 109.47109 * 299.99380 * 20 19 18 32 32 H 1.09002 * 109.47508 * 59.99571 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2398 1.6178 0.0000 4 1 3.0937 1.6964 -1.2125 5 1 1.2749 2.7464 -0.0006 6 1 3.0936 1.6964 1.2125 7 6 2.0076 -1.2154 0.0005 8 1 3.0876 -1.2154 0.0001 9 6 1.3067 -2.4296 0.0005 10 7 -0.0123 -2.5520 0.0005 11 6 -0.3472 -3.8491 0.0011 12 6 -1.5797 -4.5245 0.0018 13 6 -1.6066 -5.8878 0.0028 14 6 -0.4260 -6.6223 0.0026 15 6 0.7973 -5.9844 0.0019 16 6 0.8512 -4.5982 -0.0047 17 7 1.8826 -3.6820 0.0005 18 6 3.3164 -3.9826 -0.0003 19 6 3.8163 -4.0875 1.4419 20 6 5.3139 -4.4008 1.4411 21 9 5.7709 -4.4973 2.7598 22 1 -0.4850 0.8401 -0.0004 23 1 -2.5034 -3.9650 0.0024 24 1 -2.5558 -6.4029 0.0029 25 1 -0.4670 -7.7015 0.0030 26 1 1.7097 -6.5623 0.0022 27 1 3.8544 -3.1860 -0.5143 28 1 3.4891 -4.9281 -0.5144 29 1 3.6436 -3.1420 1.9560 30 1 3.2784 -4.8840 1.9559 31 1 5.4870 -5.3462 0.9269 32 1 5.8516 -3.6040 0.9272 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161076445.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:17 Heat of formation + Delta-G solvation = -15.225446 kcal Electronic energy + Delta-G solvation = -17535.878477 eV Core-core repulsion = 14602.933505 eV Total energy + Delta-G solvation = -2932.944971 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.59113 -42.16483 -37.89138 -36.08034 -35.18458 -32.68566 -30.82648 -30.28950 -27.66918 -26.56845 -23.22678 -23.05362 -22.36975 -21.16656 -18.83488 -17.95348 -17.72745 -17.15701 -16.64462 -16.55259 -16.02278 -15.67142 -15.32365 -15.04976 -14.51210 -14.39778 -14.31132 -13.39638 -13.27704 -13.00469 -12.90931 -12.42296 -12.33339 -12.24385 -12.12044 -11.98587 -11.80701 -11.59758 -11.09090 -10.79545 -9.81131 -9.04003 -8.63916 -8.50124 -6.55523 0.51193 1.00048 1.40711 1.46932 1.55127 2.13300 2.33153 2.38133 3.16517 3.59739 3.71081 3.73439 3.89886 4.02111 4.16780 4.19958 4.31352 4.42029 4.47769 4.66642 4.78529 4.79645 4.90820 4.99845 5.15021 5.17860 5.26069 5.56912 5.67656 5.92047 5.96467 6.15896 6.23413 6.53755 6.78310 7.19946 8.07780 8.42357 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.013178 B = 0.010256 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.179806 B = 2729.436247 C = 4669.797472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.029 3.971 3 Si 0.999 3.001 4 H -0.251 1.251 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.467 4.467 8 H 0.105 0.895 9 C 0.392 3.608 10 N -0.588 5.588 11 C 0.051 3.949 12 C -0.151 4.151 13 C -0.117 4.117 14 C -0.164 4.164 15 C -0.105 4.105 16 C -0.021 4.021 17 N -0.540 5.540 18 C 0.130 3.870 19 C -0.160 4.160 20 C 0.072 3.928 21 F -0.235 7.235 22 H 0.283 0.717 23 H 0.101 0.899 24 H 0.143 0.857 25 H 0.150 0.850 26 H 0.130 0.870 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.523 -6.752 -0.473 10.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.193 4.193 3 Si 0.818 3.182 4 H -0.175 1.175 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.504 4.504 8 H 0.123 0.877 9 C 0.153 3.847 10 N -0.313 5.313 11 C -0.075 4.075 12 C -0.172 4.172 13 C -0.137 4.137 14 C -0.184 4.184 15 C -0.126 4.126 16 C -0.129 4.129 17 N -0.235 5.235 18 C 0.008 3.992 19 C -0.200 4.200 20 C 0.017 3.983 21 F -0.217 7.217 22 H 0.093 0.907 23 H 0.119 0.881 24 H 0.161 0.839 25 H 0.168 0.832 26 H 0.148 0.852 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.904 -6.009 -0.451 9.940 hybrid contribution 0.333 0.333 0.195 0.510 sum 8.237 -5.676 -0.256 10.007 Atomic orbital electron populations 1.70123 1.09398 1.29861 1.29918 1.26990 0.95613 1.04625 0.92093 0.85017 0.78337 0.74440 0.80439 1.17489 1.19746 1.17905 1.18927 0.94929 0.87731 1.48835 0.87688 1.20799 0.87373 0.85158 0.91383 1.71247 1.10993 1.14900 1.34205 1.20130 0.94374 0.91581 1.01382 1.20061 0.94072 0.94923 1.08149 1.20669 0.99334 0.92110 1.01571 1.20909 0.90824 1.00071 1.06632 1.20062 0.99278 0.88910 1.04394 1.19292 0.89284 0.92848 1.11468 1.45642 1.05514 1.05127 1.67223 1.21424 0.78009 1.03299 0.96515 1.22444 0.97130 1.02480 0.97906 1.22014 0.92305 1.05479 0.78529 1.92726 1.90254 1.97991 1.40684 0.90678 0.88085 0.83946 0.83201 0.85233 0.88732 0.88188 0.92680 0.92095 0.87669 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -42.86 11.85 21.89 0.26 -42.60 16 2 C 0.03 1.47 5.50 85.39 0.47 1.94 16 3 Si 1.00 36.81 29.56 68.60 2.03 38.84 16 4 H -0.25 -8.65 7.11 99.48 0.71 -7.94 16 5 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 6 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 7 C -0.47 -24.13 8.99 23.26 0.21 -23.92 16 8 H 0.11 4.74 7.10 -2.91 -0.02 4.72 16 9 C 0.39 21.66 7.41 133.69 0.99 22.65 16 10 N -0.59 -35.67 9.33 -186.52 -1.74 -37.41 16 11 C 0.05 2.75 7.21 40.14 0.29 3.04 16 12 C -0.15 -7.06 10.07 22.39 0.23 -6.84 16 13 C -0.12 -4.32 9.96 22.02 0.22 -4.10 16 14 C -0.16 -5.58 10.04 22.40 0.22 -5.35 16 15 C -0.11 -3.98 10.04 22.32 0.22 -3.75 16 16 C -0.02 -1.00 6.88 39.06 0.27 -0.74 16 17 N -0.54 -24.97 2.86 -512.94 -1.46 -26.44 16 18 C 0.13 4.24 5.90 86.38 0.51 4.75 16 19 C -0.16 -4.82 5.99 30.59 0.18 -4.64 16 20 C 0.07 1.54 7.55 71.98 0.54 2.08 16 21 F -0.24 -6.43 17.36 44.97 0.78 -5.65 16 22 H 0.28 14.28 8.29 -92.70 -0.77 13.51 16 23 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 24 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 25 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 26 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 27 H 0.09 2.88 7.32 -2.39 -0.02 2.86 16 28 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -71.46 283.48 5.34 -66.11 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 1.12 Total: 22.02 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 4.36 Total: -14.86 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -2.95 Total: -106.46 kcal Atomic # 9 Polarization: -6.43 SS G_CDS: 0.78 Total: -5.65 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.84 kcal Total: -71.46 5.34 -66.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161076445.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.886 kcal (2) G-P(sol) polarization free energy of solvation -71.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds