Wall clock time and date at job start Mon Mar 30 2020 06:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46871 * 2 1 4 4 H 1.09002 * 109.46832 * 55.63940 * 3 2 1 5 5 C 1.50695 * 109.46874 * 175.63548 * 3 2 1 6 6 H 1.07999 * 120.00343 * 114.23453 * 5 3 2 7 7 C 1.37883 * 119.99868 * 294.23120 * 5 3 2 8 8 N 1.31509 * 120.00088 * 348.58469 * 7 5 3 9 9 Si 1.86805 * 119.99740 * 168.58634 * 7 5 3 10 10 H 1.48502 * 109.47399 * 60.00005 * 9 7 5 11 11 H 1.48498 * 109.46880 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46962 * 299.99951 * 9 7 5 13 13 N 1.46500 * 109.47331 * 295.63509 * 3 2 1 14 14 C 1.39333 * 119.99962 * 94.19588 * 13 3 2 15 15 C 1.39107 * 119.92977 * 5.46416 * 14 13 3 16 16 C 1.37690 * 120.10185 * 180.02562 * 15 14 13 17 17 C 1.39789 * 119.96223 * 0.02562 * 16 15 14 18 18 C 1.43202 * 120.07117 * 180.02562 * 17 16 15 19 19 N 8.11486 * 46.71894 * 345.70200 * 2 1 3 20 20 C 1.39819 * 119.86377 * 359.97438 * 17 16 15 21 21 C 1.37835 * 119.89597 * 359.72657 * 20 17 16 22 22 F 1.35097 * 119.98586 * 180.29795 * 21 20 17 23 23 H 1.08997 * 109.46829 * 305.12900 * 1 2 3 24 24 H 1.08999 * 109.47076 * 65.12802 * 1 2 3 25 25 H 1.09001 * 109.46871 * 185.12392 * 1 2 3 26 26 H 1.09004 * 109.46615 * 240.00631 * 2 1 3 27 27 H 1.08994 * 109.47114 * 120.00457 * 2 1 3 28 28 H 0.96996 * 120.00232 * 1.61706 * 8 7 5 29 29 H 0.97000 * 119.99859 * 274.18979 * 13 3 2 30 30 H 1.08001 * 119.94984 * 0.03209 * 15 14 13 31 31 H 1.08001 * 120.01868 * 180.02562 * 16 15 14 32 32 H 1.08003 * 120.05378 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6142 1.9784 0.8484 5 6 3.5431 1.4439 0.1081 6 1 4.1433 1.8066 -0.7132 7 6 4.1521 0.9822 1.2558 8 7 3.4351 0.7529 2.3341 9 14 5.9958 0.6825 1.2789 10 1 6.7074 1.9514 0.9807 11 1 6.4006 0.1909 2.6204 12 1 6.3450 -0.3335 0.2537 13 7 1.6394 2.1022 -1.2452 14 6 0.4657 2.8517 -1.2902 15 6 -0.2650 3.0676 -0.1263 16 6 -1.4256 3.8073 -0.1668 17 6 -1.8709 4.3418 -1.3793 18 6 -3.0774 5.1119 -1.4239 19 7 -4.0333 5.7246 -1.4590 20 6 -1.1353 4.1239 -2.5482 21 6 0.0290 3.3877 -2.5000 22 9 0.7443 3.1811 -3.6273 23 1 -0.3633 0.5913 0.8405 24 1 -0.3633 0.4322 -0.9323 25 1 -0.3633 -1.0236 0.0918 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.4745 0.8861 2.3151 29 1 2.1913 2.0172 -2.0384 30 1 0.0787 2.6544 0.8105 31 1 -1.9916 3.9744 0.7377 32 1 -1.4767 4.5351 -3.4867 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168312343.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:44 Heat of formation + Delta-G solvation = -17.019539 kcal Electronic energy + Delta-G solvation = -17425.815252 eV Core-core repulsion = 14492.792483 eV Total energy + Delta-G solvation = -2933.022769 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.74285 -40.56940 -38.40140 -37.08298 -34.85134 -33.06233 -31.67897 -30.61162 -28.02254 -25.25027 -24.06461 -23.87024 -21.72982 -20.11746 -19.34118 -18.32506 -17.56688 -16.88212 -16.63948 -16.06943 -15.66980 -15.20136 -14.96726 -14.87266 -14.80237 -14.55159 -14.23104 -13.95253 -13.57931 -13.53180 -13.06613 -12.97614 -12.62816 -12.48597 -12.22794 -12.17859 -11.93601 -11.60721 -11.21279 -10.58977 -10.37663 -9.88534 -8.64410 -8.29996 -6.35545 -0.04525 0.26479 1.58155 1.62509 1.69379 1.82196 1.96180 2.46969 2.63612 2.88221 2.91166 3.16410 3.37475 3.80878 4.07596 4.27596 4.32591 4.41840 4.51063 4.63786 4.77520 4.84281 5.07048 5.15873 5.19499 5.23665 5.27748 5.38206 5.58353 5.67711 5.87743 6.02351 6.45276 6.55013 6.60195 6.83762 7.40469 8.76324 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.031934 B = 0.005658 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.603287 B = 4947.494064 C = 5209.696315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.263 3.737 4 H 0.032 0.968 5 C -0.630 4.630 6 H 0.049 0.951 7 C -0.011 4.011 8 N -0.922 5.922 9 Si 1.107 2.893 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.706 5.706 14 C 0.229 3.771 15 C -0.195 4.195 16 C -0.005 4.005 17 C -0.094 4.094 18 C 0.295 3.705 19 N -0.476 5.476 20 C -0.036 4.036 21 C -0.015 4.015 22 F -0.148 7.148 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.047 0.953 28 H 0.265 0.735 29 H 0.398 0.602 30 H 0.135 0.865 31 H 0.158 0.842 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.257 2.360 -6.230 9.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.159 3.841 4 H 0.049 0.951 5 C -0.668 4.668 6 H 0.067 0.933 7 C -0.212 4.212 8 N -0.558 5.558 9 Si 0.930 3.070 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.325 5.325 14 C 0.116 3.884 15 C -0.218 4.218 16 C -0.027 4.027 17 C -0.100 4.100 18 C -0.018 4.018 19 N -0.153 5.153 20 C -0.058 4.058 21 C -0.039 4.039 22 F -0.127 7.127 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.233 0.767 30 H 0.152 0.848 31 H 0.176 0.824 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.354 2.684 -5.159 8.613 hybrid contribution -0.293 0.039 -1.389 1.420 sum -6.647 2.723 -6.547 9.719 Atomic orbital electron populations 1.21793 0.95197 1.01253 1.01371 1.21915 0.95578 0.98831 1.00302 1.18757 0.93903 0.89055 0.82414 0.95072 1.22358 0.92200 1.47599 1.04631 0.93308 1.26863 1.10101 0.92942 0.91309 1.70924 1.08684 1.47187 1.29016 0.83021 0.70384 0.77323 0.76226 1.20222 1.21116 1.19910 1.45158 1.21470 1.51266 1.14644 1.18490 0.87315 0.89324 0.93267 1.20649 0.97795 1.06514 0.96866 1.21078 0.93462 0.91136 0.96998 1.15290 0.92884 1.07104 0.94750 1.25505 0.92072 0.91859 0.92362 1.81251 1.12831 1.12427 1.08801 1.20871 0.91081 0.94662 0.99136 1.16871 0.95880 1.10030 0.81144 1.91427 1.77726 1.94337 1.49194 0.92605 0.92992 0.92772 0.93913 0.93464 0.92429 0.76719 0.84758 0.82439 0.82217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 8.53 71.98 0.61 -3.87 16 2 C -0.13 -5.11 5.34 30.60 0.16 -4.95 16 3 C 0.26 11.22 1.78 44.24 0.08 11.30 16 4 H 0.03 1.43 5.02 -2.39 -0.01 1.41 16 5 C -0.63 -31.30 8.67 25.60 0.22 -31.07 16 6 H 0.05 2.44 7.83 -2.91 -0.02 2.42 16 7 C -0.01 -0.55 5.13 84.66 0.43 -0.11 16 8 N -0.92 -49.98 13.02 21.45 0.28 -49.70 16 9 Si 1.11 46.13 29.92 68.60 2.05 48.18 16 10 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 11 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 13 N -0.71 -25.79 4.94 -322.27 -1.59 -27.39 16 14 C 0.23 7.14 5.42 38.42 0.21 7.35 16 15 C -0.20 -5.50 7.74 22.35 0.17 -5.33 16 16 C -0.01 -0.12 9.74 22.52 0.22 0.10 16 17 C -0.09 -2.09 5.74 -21.28 -0.12 -2.22 16 18 C 0.30 7.16 15.33 88.33 1.35 8.51 16 19 N -0.48 -13.52 18.54 19.00 0.35 -13.17 16 20 C -0.04 -0.81 9.72 22.56 0.22 -0.59 16 21 C -0.01 -0.42 7.30 22.44 0.16 -0.25 16 22 F -0.15 -4.34 16.63 44.97 0.75 -3.59 16 23 H 0.05 1.72 6.94 -2.39 -0.02 1.70 16 24 H 0.05 1.61 6.81 -2.39 -0.02 1.59 16 25 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.05 2.14 6.58 -2.39 -0.02 2.13 16 28 H 0.27 14.17 6.26 -92.71 -0.58 13.59 16 29 H 0.40 14.46 8.16 -92.71 -0.76 13.71 16 30 H 0.13 4.13 5.07 -2.91 -0.01 4.12 16 31 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -55.16 279.88 6.17 -48.99 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.60 Total: 17.81 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 3.73 Total: -21.13 kcal Atomic # 7 Polarization: -89.30 SS G_CDS: -0.96 Total: -90.26 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.75 Total: -3.59 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.05 Total: 48.18 kcal Total: -55.16 6.17 -48.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168312343.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.970 kcal (2) G-P(sol) polarization free energy of solvation -55.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds