Wall clock time and date at job start Mon Mar 30 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.41609 * 113.99667 * 2 1 4 4 C 1.34529 * 120.40949 * 275.17795 * 3 2 1 5 5 O 1.21584 * 118.47087 * 359.97438 * 4 3 2 6 6 N 1.33914 * 123.06110 * 180.02562 * 4 3 2 7 7 C 1.39526 * 122.96344 * 0.02562 * 6 4 3 8 8 C 1.38858 * 120.70919 * 179.97438 * 7 6 4 9 9 C 1.38121 * 119.83527 * 180.02562 * 8 7 6 10 10 C 1.38300 * 120.34946 * 359.97438 * 9 8 7 11 11 C 1.38469 * 120.03451 * 0.02562 * 10 9 8 12 12 C 1.37580 * 119.72071 * 359.96517 * 11 10 9 13 13 C 1.47279 * 120.41354 * 95.19880 * 3 2 1 14 14 H 1.08995 * 107.96758 * 58.10741 * 13 3 2 15 15 C 1.50697 * 107.96812 * 301.80952 * 13 3 2 16 16 H 1.08002 * 119.99975 * 291.13013 * 15 13 3 17 17 C 1.37879 * 120.00354 * 111.12533 * 15 13 3 18 18 N 1.31514 * 120.00484 * 172.02954 * 17 15 13 19 19 Si 1.86800 * 119.99634 * 352.03219 * 17 15 13 20 20 H 1.48503 * 109.47130 * 91.21378 * 19 17 15 21 21 H 1.48503 * 109.47085 * 211.21493 * 19 17 15 22 22 H 1.48505 * 109.47273 * 331.21513 * 19 17 15 23 23 H 1.08998 * 109.47228 * 64.69171 * 1 2 3 24 24 H 1.09000 * 109.47212 * 184.68709 * 1 2 3 25 25 H 1.08999 * 109.47524 * 304.68885 * 1 2 3 26 26 H 0.97007 * 118.52067 * 179.97438 * 6 4 3 27 27 H 1.07999 * 120.08403 * 0.04538 * 8 7 6 28 28 H 1.08001 * 119.82473 * 179.97438 * 9 8 7 29 29 H 1.08003 * 119.98289 * 179.97438 * 10 9 8 30 30 H 1.08004 * 120.13787 * 180.02562 * 11 10 9 31 31 H 0.96996 * 119.99839 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2937 0.0000 4 6 2.1862 1.9584 -1.1555 5 8 1.8452 1.4223 -2.1922 6 7 2.7255 3.1825 -1.2172 7 6 3.1505 3.8828 -0.0877 8 6 3.7043 5.1506 -0.2060 9 6 4.1194 5.8274 0.9242 10 6 3.9860 5.2492 2.1734 11 6 3.4344 3.9851 2.2967 12 6 3.0200 3.3091 1.1723 13 6 2.4132 1.9280 1.2649 14 1 3.1382 1.2745 1.7501 15 6 1.2005 2.0122 2.1555 16 1 0.3902 2.6801 1.9027 17 6 1.1252 1.2367 3.2930 18 7 0.1458 1.4211 4.1510 19 14 2.4146 -0.0759 3.6153 20 1 3.5227 0.5046 4.4156 21 1 1.7993 -1.2007 4.3647 22 1 2.9469 -0.5752 2.3220 23 1 -0.3633 0.4393 -0.9290 24 1 -0.3634 -1.0242 0.0840 25 1 -0.3634 0.5848 0.8450 26 1 2.8260 3.6011 -2.0866 27 1 3.8098 5.6066 -1.1794 28 1 4.5505 6.8133 0.8319 29 1 4.3130 5.7835 3.0532 30 1 3.3290 3.5321 3.2715 31 1 0.0931 0.8757 4.9514 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000199541962.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:15 Heat of formation + Delta-G solvation = 16.651439 kcal Electronic energy + Delta-G solvation = -18509.183707 eV Core-core repulsion = 15565.248232 eV Total energy + Delta-G solvation = -2943.935476 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.44648 -38.24021 -36.48774 -34.72408 -33.85051 -32.15932 -30.24065 -29.20239 -27.29620 -25.66237 -23.20327 -22.44315 -21.79266 -18.96406 -18.04012 -17.50571 -17.05140 -16.11296 -15.33892 -15.26873 -14.46739 -14.11006 -13.97986 -13.97658 -13.55779 -13.05320 -12.93672 -12.65746 -12.30070 -11.57234 -11.37147 -11.23951 -10.96940 -10.58094 -10.32653 -10.17876 -9.94303 -9.79831 -9.31908 -8.87914 -8.49350 -8.07427 -7.27616 -6.46453 -4.51050 1.73929 1.80842 2.34837 3.10939 3.22023 3.33029 3.62727 3.82488 4.14524 4.27848 4.83253 5.15164 5.29310 5.42226 5.53288 5.72418 5.82460 6.06280 6.09764 6.16254 6.32481 6.41599 6.52774 6.57539 6.59640 6.91098 7.06498 7.22103 7.34365 7.40951 7.72966 8.05747 8.33807 8.59061 9.02474 9.14413 10.62909 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.018502 B = 0.012708 C = 0.008435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.994196 B = 2202.838570 C = 3318.656351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 O -0.111 6.111 3 N -0.460 5.460 4 C 0.694 3.306 5 O -0.600 6.600 6 N -0.661 5.661 7 C 0.153 3.847 8 C -0.166 4.166 9 C -0.100 4.100 10 C -0.151 4.151 11 C -0.054 4.054 12 C -0.083 4.083 13 C 0.252 3.748 14 H 0.057 0.943 15 C -0.520 4.520 16 H 0.080 0.920 17 C 0.090 3.910 18 N -0.868 5.868 19 Si 0.862 3.138 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.249 1.249 23 H 0.041 0.959 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.416 0.584 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.133 0.867 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.454 5.447 -3.207 9.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 O -0.112 6.112 3 N -0.240 5.240 4 C 0.397 3.603 5 O -0.479 6.479 6 N -0.309 5.309 7 C 0.056 3.944 8 C -0.188 4.188 9 C -0.119 4.119 10 C -0.170 4.170 11 C -0.073 4.073 12 C -0.087 4.087 13 C 0.155 3.845 14 H 0.075 0.925 15 C -0.558 4.558 16 H 0.098 0.902 17 C -0.118 4.118 18 N -0.503 5.503 19 Si 0.688 3.312 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.173 1.173 23 H 0.060 0.940 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.254 0.746 27 H 0.138 0.862 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.151 0.849 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.194 4.649 -3.425 8.469 hybrid contribution 0.090 -0.450 -0.012 0.459 sum 6.285 4.199 -3.438 8.303 Atomic orbital electron populations 1.23373 0.82186 1.02653 1.02096 1.90535 1.20213 1.03937 1.96561 1.50254 1.58244 1.10491 1.04986 1.15913 0.79148 0.80495 0.84750 1.90893 1.57708 1.66504 1.32815 1.42501 1.63546 1.15760 1.09142 1.17841 0.97284 0.92486 0.86801 1.20503 1.05215 0.93810 0.99260 1.20761 0.99816 0.99226 0.92107 1.21024 1.02916 0.95861 0.97246 1.20558 0.95138 0.93671 0.97888 1.19609 1.00463 0.97201 0.91452 1.18437 0.96639 0.87772 0.81612 0.92528 1.21075 1.03284 1.25251 1.06226 0.90197 1.25101 0.95529 0.96037 0.95102 1.69895 1.31333 1.38522 1.10532 0.86997 0.82074 0.82429 0.79723 1.19593 1.20708 1.17273 0.94041 0.89342 0.90088 0.74567 0.86172 0.86277 0.86107 0.84893 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 11.14 101.05 1.13 1.02 16 2 O -0.11 -2.66 11.02 -30.34 -0.33 -3.00 16 3 N -0.46 -10.93 3.10 -60.53 -0.19 -11.12 16 4 C 0.69 15.70 8.43 -87.91 -0.74 14.96 16 5 O -0.60 -14.75 17.41 -13.58 -0.24 -14.99 16 6 N -0.66 -12.22 5.27 -14.55 -0.08 -12.30 16 7 C 0.15 2.75 6.65 -83.82 -0.56 2.19 16 8 C -0.17 -2.40 9.90 -39.39 -0.39 -2.79 16 9 C -0.10 -1.35 10.02 -39.60 -0.40 -1.74 16 10 C -0.15 -2.22 10.06 -39.47 -0.40 -2.62 16 11 C -0.05 -0.97 9.33 -39.74 -0.37 -1.34 16 12 C -0.08 -1.68 5.29 -104.35 -0.55 -2.23 16 13 C 0.25 5.84 2.91 -69.60 -0.20 5.64 16 14 H 0.06 1.34 4.63 -51.93 -0.24 1.10 16 15 C -0.52 -13.24 6.57 -34.44 -0.23 -13.46 16 16 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 17 C 0.09 2.32 5.47 -17.82 -0.10 2.22 16 18 N -0.87 -23.61 13.96 55.43 0.77 -22.84 16 19 Si 0.86 19.68 27.04 -169.99 -4.60 15.09 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.25 -5.80 6.67 56.52 0.38 -5.42 16 23 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 25 H 0.08 1.85 6.51 -51.93 -0.34 1.51 16 26 H 0.42 6.32 8.69 -40.82 -0.35 5.97 16 27 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 29 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 30 H 0.13 2.44 8.04 -52.48 -0.42 2.02 16 31 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 269.15 15.07 4.06 4.06 Total: -1.00 -30.35 269.15 -6.46 -36.81 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -3.05 Total: 6.44 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -2.81 Total: 1.84 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.51 Total: -46.26 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.57 Total: -17.99 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.60 Total: 15.09 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.35 -6.46 -36.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000199541962.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.466 kcal (2) G-P(sol) polarization free energy of solvation -30.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds