Wall clock time and date at job start Mon Mar 30 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.41609 * 113.99667 * 2 1 4 4 C 1.34529 * 120.40949 * 275.17795 * 3 2 1 5 5 O 1.21584 * 118.47087 * 359.97438 * 4 3 2 6 6 N 1.33914 * 123.06110 * 180.02562 * 4 3 2 7 7 C 1.39526 * 122.96344 * 0.02562 * 6 4 3 8 8 C 1.38858 * 120.70919 * 179.97438 * 7 6 4 9 9 C 1.38121 * 119.83527 * 180.02562 * 8 7 6 10 10 C 1.38300 * 120.34946 * 359.97438 * 9 8 7 11 11 C 1.38469 * 120.03451 * 0.02562 * 10 9 8 12 12 C 1.37580 * 119.72071 * 359.96517 * 11 10 9 13 13 C 1.47279 * 120.41354 * 95.19880 * 3 2 1 14 14 H 1.08995 * 107.96758 * 58.10741 * 13 3 2 15 15 C 1.50697 * 107.96812 * 301.80952 * 13 3 2 16 16 H 1.08002 * 119.99975 * 291.13013 * 15 13 3 17 17 C 1.37879 * 120.00354 * 111.12533 * 15 13 3 18 18 N 1.31514 * 120.00484 * 172.02954 * 17 15 13 19 19 Si 1.86800 * 119.99634 * 352.03219 * 17 15 13 20 20 H 1.48503 * 109.47130 * 91.21378 * 19 17 15 21 21 H 1.48503 * 109.47085 * 211.21493 * 19 17 15 22 22 H 1.48505 * 109.47273 * 331.21513 * 19 17 15 23 23 H 1.08998 * 109.47228 * 64.69171 * 1 2 3 24 24 H 1.09000 * 109.47212 * 184.68709 * 1 2 3 25 25 H 1.08999 * 109.47524 * 304.68885 * 1 2 3 26 26 H 0.97007 * 118.52067 * 179.97438 * 6 4 3 27 27 H 1.07999 * 120.08403 * 0.04538 * 8 7 6 28 28 H 1.08001 * 119.82473 * 179.97438 * 9 8 7 29 29 H 1.08003 * 119.98289 * 179.97438 * 10 9 8 30 30 H 1.08004 * 120.13787 * 180.02562 * 11 10 9 31 31 H 0.96996 * 119.99839 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2937 0.0000 4 6 2.1862 1.9584 -1.1555 5 8 1.8452 1.4223 -2.1922 6 7 2.7255 3.1825 -1.2172 7 6 3.1505 3.8828 -0.0877 8 6 3.7043 5.1506 -0.2060 9 6 4.1194 5.8274 0.9242 10 6 3.9860 5.2492 2.1734 11 6 3.4344 3.9851 2.2967 12 6 3.0200 3.3091 1.1723 13 6 2.4132 1.9280 1.2649 14 1 3.1382 1.2745 1.7501 15 6 1.2005 2.0122 2.1555 16 1 0.3902 2.6801 1.9027 17 6 1.1252 1.2367 3.2930 18 7 0.1458 1.4211 4.1510 19 14 2.4146 -0.0759 3.6153 20 1 3.5227 0.5046 4.4156 21 1 1.7993 -1.2007 4.3647 22 1 2.9469 -0.5752 2.3220 23 1 -0.3633 0.4393 -0.9290 24 1 -0.3634 -1.0242 0.0840 25 1 -0.3634 0.5848 0.8450 26 1 2.8260 3.6011 -2.0866 27 1 3.8098 5.6066 -1.1794 28 1 4.5505 6.8133 0.8319 29 1 4.3130 5.7835 3.0532 30 1 3.3290 3.5321 3.2715 31 1 0.0931 0.8757 4.9514 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000199541962.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:15 Heat of formation + Delta-G solvation = -3.085379 kcal Electronic energy + Delta-G solvation = -18510.039560 eV Core-core repulsion = 15565.248232 eV Total energy + Delta-G solvation = -2944.791328 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.02708 -39.74213 -38.28252 -36.28169 -35.60532 -34.02555 -31.75149 -30.58896 -29.02164 -27.41958 -24.83452 -23.96344 -23.29193 -20.48863 -19.60022 -19.45714 -18.69713 -17.76732 -17.10342 -16.79799 -16.10532 -15.79465 -15.67646 -15.35543 -15.04119 -14.83106 -14.46113 -14.35300 -13.82698 -13.20022 -12.99553 -12.85560 -12.50269 -12.20753 -11.93917 -11.91970 -11.72666 -11.53913 -11.13156 -10.79368 -10.08897 -9.55942 -8.74681 -8.46871 -6.54464 0.41689 0.53889 0.65023 1.27793 1.34180 1.47531 1.94496 2.23151 2.30913 2.87235 3.00110 3.72776 3.85867 3.97728 4.29563 4.38236 4.48023 4.48795 4.53935 4.64197 4.75249 4.81209 5.07030 5.20463 5.27529 5.28513 5.68028 5.79300 5.92203 5.99214 6.06442 6.15043 6.49459 6.64347 7.10573 7.34736 8.66891 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.018502 B = 0.012708 C = 0.008435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.994196 B = 2202.838570 C = 3318.656351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.132 6.132 3 N -0.472 5.472 4 C 0.691 3.309 5 O -0.626 6.626 6 N -0.646 5.646 7 C 0.130 3.870 8 C -0.149 4.149 9 C -0.085 4.085 10 C -0.141 4.141 11 C -0.074 4.074 12 C -0.119 4.119 13 C 0.257 3.743 14 H 0.047 0.953 15 C -0.512 4.512 16 H 0.036 0.964 17 C 0.054 3.946 18 N -0.911 5.911 19 Si 0.915 3.085 20 H -0.252 1.252 21 H -0.279 1.279 22 H -0.258 1.258 23 H 0.040 0.960 24 H 0.125 0.875 25 H 0.054 0.946 26 H 0.432 0.568 27 H 0.160 0.840 28 H 0.168 0.832 29 H 0.153 0.847 30 H 0.117 0.883 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.583 7.463 -3.781 11.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 O -0.133 6.133 3 N -0.252 5.252 4 C 0.393 3.607 5 O -0.508 6.508 6 N -0.296 5.296 7 C 0.034 3.966 8 C -0.170 4.170 9 C -0.103 4.103 10 C -0.159 4.159 11 C -0.093 4.093 12 C -0.123 4.123 13 C 0.159 3.841 14 H 0.064 0.936 15 C -0.551 4.551 16 H 0.054 0.946 17 C -0.150 4.150 18 N -0.548 5.548 19 Si 0.739 3.261 20 H -0.176 1.176 21 H -0.205 1.205 22 H -0.183 1.183 23 H 0.059 0.941 24 H 0.143 0.857 25 H 0.073 0.927 26 H 0.274 0.726 27 H 0.177 0.823 28 H 0.185 0.815 29 H 0.171 0.829 30 H 0.136 0.864 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.347 6.711 -3.997 11.431 hybrid contribution -0.551 -0.921 0.120 1.080 sum 7.796 5.789 -3.877 10.456 Atomic orbital electron populations 1.23390 0.80908 1.04459 1.00786 1.90466 1.21531 1.04696 1.96597 1.50150 1.58752 1.10526 1.05772 1.16029 0.79290 0.81510 0.83880 1.90860 1.59058 1.67581 1.33307 1.42264 1.62612 1.14360 1.10411 1.18044 0.99002 0.94004 0.85526 1.20984 1.02529 0.91751 1.01702 1.21333 0.97616 1.00613 0.90747 1.21424 1.00897 0.94158 0.99461 1.20625 0.96577 0.95409 0.96660 1.19568 1.03022 0.96198 0.93551 1.18434 0.95135 0.89649 0.80868 0.93589 1.20943 1.03192 1.24131 1.06814 0.94578 1.25647 0.97027 0.97464 0.94862 1.69986 1.33297 1.40045 1.11429 0.86177 0.80516 0.80235 0.79217 1.17589 1.20452 1.18277 0.94120 0.85725 0.92697 0.72634 0.82260 0.81489 0.82911 0.86450 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.09 11.14 113.37 1.26 1.36 16 2 O -0.13 -6.43 11.02 -20.76 -0.23 -6.66 16 3 N -0.47 -22.98 3.10 -463.83 -1.44 -24.41 16 4 C 0.69 31.41 8.43 179.40 1.51 32.92 16 5 O -0.63 -30.98 17.41 14.06 0.24 -30.73 16 6 N -0.65 -23.14 5.27 -318.70 -1.68 -24.82 16 7 C 0.13 4.44 6.65 38.26 0.25 4.70 16 8 C -0.15 -3.60 9.90 22.39 0.22 -3.38 16 9 C -0.08 -1.79 10.02 22.26 0.22 -1.57 16 10 C -0.14 -3.59 10.06 22.34 0.22 -3.36 16 11 C -0.07 -2.59 9.33 22.17 0.21 -2.39 16 12 C -0.12 -4.80 5.29 -19.69 -0.10 -4.91 16 13 C 0.26 12.20 2.91 43.49 0.13 12.32 16 14 H 0.05 2.24 4.63 -2.39 -0.01 2.23 16 15 C -0.51 -27.29 6.57 25.60 0.17 -27.12 16 16 H 0.04 2.19 8.06 -2.91 -0.02 2.17 16 17 C 0.05 2.86 5.47 84.66 0.46 3.33 16 18 N -0.91 -51.39 13.96 21.45 0.30 -51.09 16 19 Si 0.91 41.50 27.04 68.60 1.85 43.36 16 20 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.26 -12.03 6.67 99.48 0.66 -11.37 16 23 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.12 4.34 8.14 -2.39 -0.02 4.32 16 25 H 0.05 2.63 6.51 -2.39 -0.02 2.61 16 26 H 0.43 12.23 8.69 -92.70 -0.81 11.43 16 27 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 28 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 29 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 30 H 0.12 4.38 8.04 -2.91 -0.02 4.36 16 31 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -69.27 269.15 3.93 -65.34 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.32 Total: 17.13 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 4.56 Total: 11.89 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -2.82 Total: -100.33 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: 0.02 Total: -37.39 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.85 Total: 43.36 kcal Total: -69.27 3.93 -65.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000199541962.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.252 kcal (2) G-P(sol) polarization free energy of solvation -69.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds