Wall clock time and date at job start Mon Mar 30 2020 06:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86795 * 120.00021 * 2 1 4 4 H 1.48498 * 109.47425 * 240.00078 * 3 2 1 5 5 H 1.48500 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47001 * 120.00173 * 3 2 1 7 7 C 1.39937 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99579 * 167.02266 * 7 2 1 9 9 C 1.41402 * 120.00077 * 347.02186 * 7 2 1 10 10 C 1.40776 * 120.21446 * 151.85354 * 9 7 2 11 11 C 1.37627 * 119.85239 * 180.02562 * 10 9 7 12 12 C 1.38565 * 120.30889 * 359.97438 * 11 10 9 13 13 C 1.39114 * 120.44083 * 0.02562 * 12 11 10 14 14 O 1.35898 * 119.93284 * 179.97438 * 13 12 11 15 15 C 1.42907 * 116.99921 * 5.36894 * 14 13 12 16 16 C 1.53182 * 109.53895 * 274.60452 * 15 14 13 17 17 C 1.53107 * 109.15480 * 183.24112 * 16 15 14 18 18 O 1.42896 * 109.48755 * 57.47374 * 17 16 15 19 19 C 1.42901 * 114.09932 * 298.88717 * 18 17 16 20 20 C 1.53096 * 109.41482 * 61.15890 * 19 18 17 21 21 C 1.38142 * 120.13779 * 359.97438 * 13 12 11 22 22 H 0.96995 * 120.00130 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.07206 * 359.97438 * 10 9 7 24 24 H 1.08001 * 119.84143 * 180.02562 * 11 10 9 25 25 H 1.07992 * 119.77949 * 179.97438 * 12 11 10 26 26 H 1.08996 * 109.54231 * 34.78184 * 15 14 13 27 27 H 1.08996 * 109.52138 * 303.05890 * 16 15 14 28 28 H 1.08998 * 109.52110 * 63.24661 * 16 15 14 29 29 H 1.09003 * 109.40313 * 297.48798 * 17 16 15 30 30 H 1.09000 * 109.47755 * 177.50638 * 17 16 15 31 31 H 1.08993 * 109.48348 * 301.17568 * 19 18 17 32 32 H 1.08999 * 109.49446 * 181.14491 * 19 18 17 33 33 H 1.09003 * 109.52296 * 182.48222 * 20 19 18 34 34 H 1.09000 * 109.52348 * 62.29807 * 20 19 18 35 35 H 1.08004 * 120.15282 * 180.28082 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0673 -1.2237 -0.2106 9 6 1.3280 -2.4210 0.2739 10 6 1.7928 -3.6340 -0.2685 11 6 1.1249 -4.8064 0.0031 12 6 -0.0027 -4.7984 0.8084 13 6 -0.4729 -3.6068 1.3510 14 8 -1.5800 -3.6109 2.1390 15 6 -2.1404 -4.8847 2.4640 16 6 -3.0921 -5.3256 1.3477 17 6 -3.7487 -6.6514 1.7418 18 8 -4.4325 -6.4933 2.9865 19 6 -3.5834 -6.1286 4.0765 20 6 -2.9219 -4.7807 3.7773 21 6 0.1833 -2.4195 1.0903 22 1 -0.4850 0.8400 0.0004 23 1 2.6710 -3.6445 -0.8970 24 1 1.4819 -5.7370 -0.4128 25 1 -0.5204 -5.7232 1.0156 26 1 -1.3410 -5.6177 2.5725 27 1 -3.8621 -4.5675 1.2049 28 1 -2.5319 -5.4560 0.4218 29 1 -2.9817 -7.4193 1.8432 30 1 -4.4602 -6.9479 0.9711 31 1 -2.8143 -6.8895 4.2086 32 1 -4.1757 -6.0483 4.9879 33 1 -2.2401 -4.5217 4.5874 34 1 -3.6884 -4.0112 3.6851 35 1 -0.1789 -1.4949 1.5151 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215899154.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:02 Heat of formation + Delta-G solvation = -76.978234 kcal Electronic energy + Delta-G solvation = -17891.347826 eV Core-core repulsion = 15046.892606 eV Total energy + Delta-G solvation = -2844.455219 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.76725 -38.17813 -36.27071 -33.50347 -32.44176 -31.13296 -29.58903 -28.46369 -25.41941 -24.42785 -23.52568 -21.25078 -20.69106 -19.80088 -17.82012 -16.31886 -16.18506 -16.03368 -15.12167 -14.88860 -14.63478 -14.47382 -14.09375 -13.58068 -12.91801 -12.75056 -12.60750 -12.23114 -12.05623 -11.64381 -11.29076 -11.15537 -11.03144 -10.94989 -10.62613 -10.48308 -10.26642 -9.87546 -9.82373 -9.65101 -9.40138 -9.14690 -7.42448 -6.95878 -6.66794 -4.41945 2.78128 3.03997 3.07961 3.10382 3.21123 3.79188 3.94067 4.02060 4.63000 4.84482 4.90521 5.00159 5.19275 5.24845 5.46473 5.53511 5.65032 5.66855 5.68649 5.91694 6.06258 6.07711 6.25633 6.27076 6.43446 6.73076 6.92346 7.07666 7.13520 7.28025 7.45311 7.75270 7.82989 8.01322 8.08050 8.41455 8.77356 8.88653 8.95325 10.22167 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.036063 B = 0.005322 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.238484 B = 5259.664827 C = 5720.729006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.463 4.463 8 H 0.079 0.921 9 C 0.136 3.864 10 C -0.245 4.245 11 C -0.069 4.069 12 C -0.320 4.320 13 C 0.130 3.870 14 O -0.317 6.317 15 C 0.090 3.910 16 C -0.181 4.181 17 C 0.065 3.935 18 O -0.385 6.385 19 C 0.066 3.934 20 C -0.153 4.153 21 C -0.190 4.190 22 H 0.281 0.719 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.095 -7.830 4.879 10.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.492 4.492 8 H 0.097 0.903 9 C 0.133 3.867 10 C -0.265 4.265 11 C -0.087 4.087 12 C -0.340 4.340 13 C 0.087 3.913 14 O -0.232 6.232 15 C 0.033 3.967 16 C -0.219 4.219 17 C -0.011 4.011 18 O -0.304 6.304 19 C -0.010 4.010 20 C -0.190 4.190 21 C -0.210 4.210 22 H 0.092 0.908 23 H 0.112 0.888 24 H 0.108 0.892 25 H 0.112 0.888 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.601 -7.524 4.964 10.612 hybrid contribution 0.703 0.619 -0.270 0.975 sum -4.898 -6.904 4.694 9.679 Atomic orbital electron populations 1.69819 1.07487 1.29310 1.35087 1.25927 0.94805 1.01294 0.92328 0.86329 0.80036 0.80187 0.79920 1.19008 1.20316 1.18830 1.19528 0.96533 0.90571 1.42591 0.90271 1.17355 0.90126 0.92179 0.87046 1.20993 1.04152 0.93298 1.08029 1.20313 0.94883 0.96473 0.97026 1.20435 1.04622 0.95549 1.13348 1.18918 0.85872 0.94847 0.91697 1.86068 1.41780 1.29128 1.66209 1.22105 0.94514 0.86475 0.93635 1.22783 1.00304 0.98460 1.00320 1.22564 0.96667 0.95887 0.86015 1.87899 1.35300 1.89696 1.17502 1.22550 0.94072 0.94411 0.90006 1.22272 1.00501 0.99052 0.97206 1.20616 1.00160 0.94957 1.05281 0.90773 0.88833 0.89246 0.88786 0.91288 0.90286 0.89712 0.93174 0.88648 0.93087 0.88438 0.90152 0.90120 0.85725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.02 10.93 55.55 0.61 -20.41 16 2 C 0.07 1.90 5.21 -17.34 -0.09 1.81 16 3 Si 0.91 18.85 29.58 -169.99 -5.03 13.82 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.46 -12.40 9.06 -37.74 -0.34 -12.74 16 8 H 0.08 2.01 7.88 -52.49 -0.41 1.60 16 9 C 0.14 3.69 5.55 -106.84 -0.59 3.10 16 10 C -0.25 -6.10 9.79 -38.85 -0.38 -6.48 16 11 C -0.07 -1.56 10.02 -39.68 -0.40 -1.95 16 12 C -0.32 -7.20 8.31 -39.14 -0.33 -7.52 16 13 C 0.13 3.19 6.59 -39.29 -0.26 2.93 16 14 O -0.32 -7.01 9.80 -19.42 -0.19 -7.20 16 15 C 0.09 1.53 2.19 -26.55 -0.06 1.47 16 16 C -0.18 -2.79 5.44 -26.58 -0.14 -2.93 16 17 C 0.07 0.82 6.84 37.21 0.25 1.07 16 18 O -0.39 -5.17 10.77 -35.23 -0.38 -5.55 16 19 C 0.07 0.77 6.84 37.21 0.25 1.02 16 20 C -0.15 -2.12 5.79 -26.59 -0.15 -2.28 16 21 C -0.19 -5.16 8.59 -38.73 -0.33 -5.49 16 22 H 0.28 6.82 8.30 -40.82 -0.34 6.49 16 23 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 24 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 25 H 0.09 1.85 5.38 -52.49 -0.28 1.57 16 26 H 0.07 1.16 6.28 -51.93 -0.33 0.83 16 27 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.08 1.39 6.93 -51.93 -0.36 1.03 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.12 3.56 6.27 -52.48 -0.33 3.23 16 LS Contribution 286.76 15.07 4.32 4.32 Total: -1.00 -28.93 286.76 -7.89 -36.82 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.65 Total: 6.20 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: -2.57 Total: -28.00 kcal Atomic # 7 Polarization: -21.02 SS G_CDS: 0.61 Total: -20.41 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.57 Total: -12.75 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.93 -7.89 -36.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215899154.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.159 kcal (2) G-P(sol) polarization free energy of solvation -28.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds