Wall clock time and date at job start Mon Mar 30 2020 06:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86795 * 120.00021 * 2 1 4 4 H 1.48498 * 109.47425 * 240.00078 * 3 2 1 5 5 H 1.48500 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47001 * 120.00173 * 3 2 1 7 7 C 1.39937 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99579 * 167.02266 * 7 2 1 9 9 C 1.41402 * 120.00077 * 347.02186 * 7 2 1 10 10 C 1.40776 * 120.21446 * 151.85354 * 9 7 2 11 11 C 1.37627 * 119.85239 * 180.02562 * 10 9 7 12 12 C 1.38565 * 120.30889 * 359.97438 * 11 10 9 13 13 C 1.39114 * 120.44083 * 0.02562 * 12 11 10 14 14 O 1.35898 * 119.93284 * 179.97438 * 13 12 11 15 15 C 1.42907 * 116.99921 * 5.36894 * 14 13 12 16 16 C 1.53182 * 109.53895 * 274.60452 * 15 14 13 17 17 C 1.53107 * 109.15480 * 183.24112 * 16 15 14 18 18 O 1.42896 * 109.48755 * 57.47374 * 17 16 15 19 19 C 1.42901 * 114.09932 * 298.88717 * 18 17 16 20 20 C 1.53096 * 109.41482 * 61.15890 * 19 18 17 21 21 C 1.38142 * 120.13779 * 359.97438 * 13 12 11 22 22 H 0.96995 * 120.00130 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.07206 * 359.97438 * 10 9 7 24 24 H 1.08001 * 119.84143 * 180.02562 * 11 10 9 25 25 H 1.07992 * 119.77949 * 179.97438 * 12 11 10 26 26 H 1.08996 * 109.54231 * 34.78184 * 15 14 13 27 27 H 1.08996 * 109.52138 * 303.05890 * 16 15 14 28 28 H 1.08998 * 109.52110 * 63.24661 * 16 15 14 29 29 H 1.09003 * 109.40313 * 297.48798 * 17 16 15 30 30 H 1.09000 * 109.47755 * 177.50638 * 17 16 15 31 31 H 1.08993 * 109.48348 * 301.17568 * 19 18 17 32 32 H 1.08999 * 109.49446 * 181.14491 * 19 18 17 33 33 H 1.09003 * 109.52296 * 182.48222 * 20 19 18 34 34 H 1.09000 * 109.52348 * 62.29807 * 20 19 18 35 35 H 1.08004 * 120.15282 * 180.28082 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0673 -1.2237 -0.2106 9 6 1.3280 -2.4210 0.2739 10 6 1.7928 -3.6340 -0.2685 11 6 1.1249 -4.8064 0.0031 12 6 -0.0027 -4.7984 0.8084 13 6 -0.4729 -3.6068 1.3510 14 8 -1.5800 -3.6109 2.1390 15 6 -2.1404 -4.8847 2.4640 16 6 -3.0921 -5.3256 1.3477 17 6 -3.7487 -6.6514 1.7418 18 8 -4.4325 -6.4933 2.9865 19 6 -3.5834 -6.1286 4.0765 20 6 -2.9219 -4.7807 3.7773 21 6 0.1833 -2.4195 1.0903 22 1 -0.4850 0.8400 0.0004 23 1 2.6710 -3.6445 -0.8970 24 1 1.4819 -5.7370 -0.4128 25 1 -0.5204 -5.7232 1.0156 26 1 -1.3410 -5.6177 2.5725 27 1 -3.8621 -4.5675 1.2049 28 1 -2.5319 -5.4560 0.4218 29 1 -2.9817 -7.4193 1.8432 30 1 -4.4602 -6.9479 0.9711 31 1 -2.8143 -6.8895 4.2086 32 1 -4.1757 -6.0483 4.9879 33 1 -2.2401 -4.5217 4.5874 34 1 -3.6884 -4.0112 3.6851 35 1 -0.1789 -1.4949 1.5151 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215899154.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:02 Heat of formation + Delta-G solvation = -93.855531 kcal Electronic energy + Delta-G solvation = -17892.079680 eV Core-core repulsion = 15046.892606 eV Total energy + Delta-G solvation = -2845.187074 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.17961 -39.61905 -37.99735 -35.39662 -33.74747 -32.20865 -31.49441 -30.29673 -27.31381 -25.68518 -24.63175 -23.03777 -22.38993 -21.19913 -19.60824 -18.03962 -17.56491 -17.06758 -16.81498 -16.37232 -16.10893 -15.98846 -15.48295 -15.12033 -14.48331 -14.31007 -14.15952 -13.79885 -13.39939 -13.31137 -12.83107 -12.75074 -12.58260 -12.36126 -12.17169 -12.01225 -11.78194 -11.47387 -11.30430 -11.26155 -11.00611 -10.67484 -9.37572 -8.85007 -8.56257 -6.43763 0.94021 1.11052 1.37289 1.49953 1.52736 2.20104 2.44533 2.72944 2.92117 3.63574 3.71750 3.74757 3.93148 3.98380 4.22250 4.29395 4.38905 4.48763 4.56512 4.63371 4.71521 4.78191 4.85324 4.98988 5.02648 5.10158 5.11728 5.19858 5.31915 5.53119 5.90340 5.90952 6.07383 6.16049 6.17560 6.47502 6.87002 6.92456 7.04193 8.33833 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.036063 B = 0.005322 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.238484 B = 5259.664827 C = 5720.729006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.031 3.969 3 Si 0.987 3.013 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.499 4.499 8 H 0.082 0.918 9 C 0.106 3.894 10 C -0.264 4.264 11 C -0.063 4.063 12 C -0.313 4.313 13 C 0.130 3.870 14 O -0.338 6.338 15 C 0.077 3.923 16 C -0.177 4.177 17 C 0.071 3.929 18 O -0.397 6.397 19 C 0.069 3.931 20 C -0.149 4.149 21 C -0.226 4.226 22 H 0.287 0.713 23 H 0.104 0.896 24 H 0.130 0.870 25 H 0.128 0.872 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.193 -9.481 5.284 12.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.184 4.184 3 Si 0.807 3.193 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.528 4.528 8 H 0.100 0.900 9 C 0.104 3.896 10 C -0.284 4.284 11 C -0.081 4.081 12 C -0.332 4.332 13 C 0.086 3.914 14 O -0.253 6.253 15 C 0.021 3.979 16 C -0.215 4.215 17 C -0.006 4.006 18 O -0.316 6.316 19 C -0.007 4.007 20 C -0.187 4.187 21 C -0.246 4.246 22 H 0.097 0.903 23 H 0.122 0.878 24 H 0.148 0.852 25 H 0.145 0.855 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.132 0.868 31 H 0.087 0.913 32 H 0.141 0.859 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.709 -9.204 5.374 12.091 hybrid contribution 0.644 0.999 -0.351 1.239 sum -5.065 -8.204 5.023 10.872 Atomic orbital electron populations 1.69913 1.09185 1.30503 1.35893 1.26862 0.95536 1.04814 0.91160 0.85183 0.78628 0.75240 0.80222 1.17953 1.19385 1.18342 1.19846 0.96929 0.91709 1.44364 0.89960 1.17734 0.90678 0.93558 0.87638 1.21221 1.05042 0.93486 1.08647 1.20754 0.94127 0.97304 0.95957 1.20792 1.04359 0.95995 1.12051 1.19008 0.86108 0.94739 0.91534 1.86048 1.41004 1.32649 1.65643 1.22558 0.95093 0.84497 0.95724 1.22747 0.99523 0.99957 0.99304 1.22625 0.97465 0.94167 0.86342 1.87898 1.36119 1.89557 1.17992 1.22711 0.94686 0.93006 0.90337 1.22321 1.00036 1.00650 0.95712 1.20527 1.01757 0.95160 1.07194 0.90298 0.87832 0.85181 0.85479 0.90615 0.91870 0.90790 0.91317 0.86791 0.91256 0.85909 0.89520 0.91284 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.89 10.93 21.82 0.24 -45.65 16 2 C 0.03 1.61 5.21 85.25 0.44 2.05 16 3 Si 0.99 39.30 29.58 68.60 2.03 41.33 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 6 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 7 C -0.50 -27.73 9.06 23.46 0.21 -27.51 16 8 H 0.08 4.32 7.88 -2.91 -0.02 4.30 16 9 C 0.11 5.99 5.55 -21.30 -0.12 5.87 16 10 C -0.26 -13.20 9.79 22.75 0.22 -12.98 16 11 C -0.06 -2.76 10.02 22.20 0.22 -2.54 16 12 C -0.31 -13.61 8.31 22.56 0.19 -13.42 16 13 C 0.13 6.47 6.59 22.46 0.15 6.62 16 14 O -0.34 -15.20 9.80 -92.40 -0.91 -16.10 16 15 C 0.08 2.54 2.19 30.71 0.07 2.60 16 16 C -0.18 -5.24 5.44 30.69 0.17 -5.07 16 17 C 0.07 1.56 6.84 72.02 0.49 2.05 16 18 O -0.40 -9.45 10.77 -148.98 -1.60 -11.05 16 19 C 0.07 1.38 6.84 72.01 0.49 1.87 16 20 C -0.15 -3.93 5.79 30.68 0.18 -3.76 16 21 C -0.23 -12.82 8.59 22.82 0.20 -12.63 16 22 H 0.29 14.44 8.30 -92.71 -0.77 13.67 16 23 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 24 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 25 H 0.13 4.62 5.38 -2.91 -0.02 4.60 16 26 H 0.08 2.37 6.28 -2.39 -0.02 2.35 16 27 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.07 2.32 6.93 -2.39 -0.02 2.31 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.10 5.92 6.27 -2.91 -0.02 5.90 16 Total: -1.00 -64.99 286.76 3.75 -61.24 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 1.08 Total: 27.08 kcal Atomic # 6 Polarization: -59.76 SS G_CDS: 2.91 Total: -56.84 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.24 Total: -45.65 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -2.51 Total: -27.15 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -64.99 3.75 -61.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215899154.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.618 kcal (2) G-P(sol) polarization free energy of solvation -64.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds