Wall clock time and date at job start Mon Mar 30 2020 06:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86807 * 119.99708 * 2 1 4 4 H 1.48507 * 109.46654 * 264.99456 * 3 2 1 5 5 H 1.48494 * 109.46999 * 24.99119 * 3 2 1 6 6 H 1.48498 * 109.47136 * 144.99808 * 3 2 1 7 7 C 1.39928 * 120.00365 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99862 * 146.63860 * 7 2 1 9 9 C 1.41404 * 120.00163 * 326.64508 * 7 2 1 10 10 C 1.40762 * 120.21681 * 341.46905 * 9 7 2 11 11 C 1.37633 * 119.85984 * 179.70595 * 10 9 7 12 12 C 1.38561 * 120.29828 * 0.54673 * 11 10 9 13 13 C 1.39112 * 120.44627 * 359.45307 * 12 11 10 14 14 O 1.35904 * 119.93398 * 180.25216 * 13 12 11 15 15 C 1.42902 * 116.99951 * 353.66627 * 14 13 12 16 16 H 1.08998 * 109.52198 * 325.15991 * 15 14 13 17 17 C 1.53174 * 109.52504 * 204.96417 * 15 14 13 18 18 C 1.53175 * 109.03678 * 183.11506 * 17 15 14 19 19 C 1.53091 * 109.16443 * 56.98218 * 18 17 15 20 20 O 1.42897 * 109.41510 * 302.39266 * 19 18 17 21 21 C 1.42903 * 114.10147 * 61.15725 * 20 19 18 22 22 C 1.38132 * 120.13564 * 0.26571 * 13 12 11 23 23 H 0.96998 * 120.00653 * 0.02562 * 1 2 3 24 24 H 1.08008 * 120.07492 * 0.02562 * 10 9 7 25 25 H 1.08000 * 119.84974 * 180.27438 * 11 10 9 26 26 H 1.08007 * 119.77570 * 179.72156 * 12 11 10 27 27 H 1.08993 * 109.54411 * 302.98343 * 17 15 14 28 28 H 1.09005 * 109.53867 * 63.24735 * 17 15 14 29 29 H 1.09008 * 109.52373 * 297.07630 * 18 17 15 30 30 H 1.09001 * 109.57330 * 176.92224 * 18 17 15 31 31 H 1.09002 * 109.48198 * 182.40296 * 19 18 17 32 32 H 1.08996 * 109.48757 * 62.37915 * 19 18 17 33 33 H 1.08994 * 109.48723 * 178.86077 * 21 20 19 34 34 H 1.08998 * 109.49127 * 58.82524 * 21 20 19 35 35 H 1.07997 * 120.15452 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.5954 1.9854 -1.3948 5 1 1.3907 2.6809 0.5915 6 1 3.4829 1.4732 0.8031 7 6 2.0080 -1.2118 0.0005 8 1 2.9545 -1.2890 -0.5138 9 6 1.4757 -2.3353 0.6743 10 6 0.4766 -2.1675 1.6516 11 6 -0.0406 -3.2667 2.2986 12 6 0.4259 -4.5369 2.0004 13 6 1.4129 -4.7173 1.0369 14 8 1.8592 -5.9683 0.7491 15 6 1.3741 -7.0344 1.5678 16 1 1.2454 -6.6790 2.5901 17 6 2.3777 -8.1915 1.5491 18 6 1.8115 -9.3571 2.3659 19 6 0.4506 -9.7591 1.7914 20 8 -0.4249 -8.6298 1.8095 21 6 0.0300 -7.5261 1.0241 22 6 1.9407 -3.6274 0.3723 23 1 -0.4851 0.8400 -0.0004 24 1 0.1128 -1.1787 1.8895 25 1 -0.8103 -3.1381 3.0451 26 1 0.0172 -5.3932 2.5165 27 1 2.5439 -8.5134 0.5212 28 1 3.3205 -7.8634 1.9869 29 1 1.6919 -9.0497 3.4049 30 1 2.4940 -10.2053 2.3133 31 1 0.0235 -10.5600 2.3949 32 1 0.5767 -10.1048 0.7655 33 1 -0.7000 -6.7183 1.0748 34 1 0.1509 -7.8423 -0.0120 35 1 2.7073 -3.7670 -0.3754 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215899291.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:05 Heat of formation + Delta-G solvation = -93.924455 kcal Electronic energy + Delta-G solvation = -17746.569468 eV Core-core repulsion = 14901.379405 eV Total energy + Delta-G solvation = -2845.190063 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.23028 -39.61011 -38.01507 -35.43876 -34.26208 -32.07722 -31.48620 -29.92580 -27.31658 -26.05928 -24.67636 -22.85037 -22.52901 -21.13723 -19.76136 -17.94262 -17.61102 -17.29977 -16.87996 -16.32260 -16.26252 -16.13654 -15.09391 -15.02303 -14.66932 -14.20929 -14.12168 -13.88537 -13.55814 -13.46877 -12.89050 -12.75594 -12.56075 -12.27079 -12.10374 -12.08691 -11.89093 -11.73010 -11.40204 -11.19121 -10.87901 -10.48555 -9.57900 -8.85361 -8.80500 -6.39076 0.92068 1.10188 1.37355 1.47372 1.58205 2.16659 2.29968 2.58095 2.98430 3.62325 3.66299 3.75052 3.86125 4.04042 4.08384 4.31602 4.39254 4.49013 4.59020 4.65754 4.74489 4.86166 4.93037 4.97358 5.02486 5.04027 5.09969 5.19068 5.26344 5.53643 5.78026 5.90686 6.05521 6.07717 6.16211 6.47738 6.77362 6.87059 7.01892 8.15394 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.055665 B = 0.004622 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.889941 B = 6056.188159 C = 6313.767060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.052 3.948 3 Si 0.977 3.023 4 H -0.256 1.256 5 H -0.261 1.261 6 H -0.259 1.259 7 C -0.502 4.502 8 H 0.079 0.921 9 C 0.114 3.886 10 C -0.232 4.232 11 C -0.067 4.067 12 C -0.332 4.332 13 C 0.151 3.849 14 O -0.327 6.327 15 C 0.050 3.950 16 H 0.071 0.929 17 C -0.117 4.117 18 C -0.143 4.143 19 C 0.045 3.955 20 O -0.392 6.392 21 C 0.046 3.954 22 C -0.293 4.293 23 H 0.296 0.704 24 H 0.097 0.903 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.661 -12.407 3.658 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.168 4.168 3 Si 0.796 3.204 4 H -0.181 1.181 5 H -0.185 1.185 6 H -0.183 1.183 7 C -0.529 4.529 8 H 0.097 0.903 9 C 0.111 3.889 10 C -0.252 4.252 11 C -0.086 4.086 12 C -0.351 4.351 13 C 0.107 3.893 14 O -0.242 6.242 15 C -0.007 4.007 16 H 0.089 0.911 17 C -0.154 4.154 18 C -0.181 4.181 19 C -0.031 4.031 20 O -0.311 6.311 21 C -0.031 4.031 22 C -0.313 4.313 23 H 0.107 0.893 24 H 0.115 0.885 25 H 0.134 0.866 26 H 0.138 0.862 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.138 0.862 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.381 -12.351 3.587 12.935 hybrid contribution 0.267 0.919 -0.205 0.979 sum 1.647 -11.432 3.381 12.035 Atomic orbital electron populations 1.69942 1.09676 1.31781 1.30108 1.26834 0.95043 1.04762 0.90195 0.85315 0.79475 0.75494 0.80088 1.18071 1.18463 1.18333 1.19790 1.06448 0.95341 1.31312 0.90308 1.17615 0.89851 0.91425 0.89985 1.21051 1.04467 0.97578 1.02056 1.20726 0.97669 0.92352 0.97804 1.20643 1.07828 0.97761 1.08866 1.18761 0.93230 0.83044 0.94254 1.85997 1.67586 1.13941 1.56709 1.23115 0.95682 0.87044 0.94842 0.91146 1.21710 0.97921 0.93383 1.02410 1.22191 0.97807 0.98176 0.99881 1.22967 0.90138 0.88082 1.01894 1.87945 1.47589 1.24755 1.70775 1.22972 0.95554 0.89667 0.94904 1.20245 1.10918 0.90898 1.09225 0.89267 0.88456 0.86576 0.86191 0.90400 0.90528 0.90899 0.87113 0.86198 0.91955 0.89687 0.91994 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.91 11.62 21.82 0.25 -40.66 16 2 C 0.05 2.63 4.79 85.25 0.41 3.04 16 3 Si 0.98 37.31 29.67 68.60 2.04 39.34 16 4 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 5 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 6 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 7 C -0.50 -27.73 8.96 23.46 0.21 -27.52 16 8 H 0.08 4.24 8.02 -2.91 -0.02 4.21 16 9 C 0.11 6.45 5.61 -21.31 -0.12 6.33 16 10 C -0.23 -12.57 8.81 22.74 0.20 -12.37 16 11 C -0.07 -3.24 10.02 22.20 0.22 -3.01 16 12 C -0.33 -15.27 8.29 22.56 0.19 -15.08 16 13 C 0.15 7.34 6.59 22.45 0.15 7.49 16 14 O -0.33 -13.77 9.80 -92.47 -0.91 -14.68 16 15 C 0.05 1.63 2.31 30.69 0.07 1.70 16 16 H 0.07 2.41 6.34 -2.39 -0.02 2.40 16 17 C -0.12 -2.83 5.68 30.71 0.17 -2.66 16 18 C -0.14 -2.51 6.14 30.68 0.19 -2.32 16 19 C 0.05 0.84 6.84 72.01 0.49 1.33 16 20 O -0.39 -10.77 10.76 -148.98 -1.60 -12.37 16 21 C 0.05 1.43 6.12 72.02 0.44 1.87 16 22 C -0.29 -15.80 9.73 22.82 0.22 -15.58 16 23 H 0.30 13.51 8.30 -92.71 -0.77 12.74 16 24 H 0.10 5.35 6.33 -2.91 -0.02 5.33 16 25 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 26 H 0.12 4.88 5.35 -2.91 -0.02 4.86 16 27 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 2.94 6.85 -2.39 -0.02 2.92 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 4.92 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -62.46 287.34 3.70 -58.75 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 1.08 Total: 26.41 kcal Atomic # 6 Polarization: -59.64 SS G_CDS: 2.85 Total: -56.80 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.25 Total: -40.66 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -2.51 Total: -27.05 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.04 Total: 39.34 kcal Total: -62.46 3.70 -58.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215899291.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.170 kcal (2) G-P(sol) polarization free energy of solvation -62.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds