Wall clock time and date at job start Mon Mar 30 2020 06:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47081 * 2 1 4 4 N 1.46502 * 109.47161 * 120.00302 * 2 1 3 5 5 N 1.39718 * 125.10969 * 300.02149 * 4 2 1 6 6 C 1.32470 * 110.84444 * 179.97438 * 5 4 2 7 7 C 1.41055 * 133.96875 * 180.02562 * 6 5 4 8 8 C 1.36061 * 119.75507 * 179.97438 * 7 6 5 9 9 C 1.39300 * 121.67507 * 0.02907 * 8 7 6 10 10 F 1.35098 * 119.37392 * 179.97438 * 9 8 7 11 11 C 1.37946 * 121.24701 * 359.97058 * 9 8 7 12 12 C 1.39382 * 119.47305 * 0.02562 * 11 9 8 13 13 C 1.37303 * 125.11362 * 119.72132 * 4 2 1 14 14 C 1.39043 * 126.94069 * 359.97438 * 13 4 2 15 15 H 1.08002 * 119.99402 * 30.85967 * 14 13 4 16 16 C 1.40324 * 120.00078 * 210.85668 * 14 13 4 17 17 N 1.30706 * 120.00105 * 19.17868 * 16 14 13 18 18 Si 1.86798 * 120.00062 * 199.17351 * 16 14 13 19 19 H 1.48499 * 109.47216 * 89.99936 * 18 16 14 20 20 H 1.48503 * 109.47247 * 210.00321 * 18 16 14 21 21 H 1.48505 * 109.47299 * 329.99863 * 18 16 14 22 22 H 1.09003 * 109.47214 * 299.99625 * 1 2 3 23 23 H 1.09004 * 109.47090 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46960 * 59.99672 * 1 2 3 25 25 H 1.09003 * 109.47214 * 240.00374 * 2 1 3 26 26 H 1.09003 * 109.47295 * 60.00269 * 3 2 1 27 27 H 1.09000 * 109.47286 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47491 * 300.00003 * 3 2 1 29 29 H 1.07995 * 120.12018 * 359.95387 * 7 6 5 30 30 H 1.08003 * 119.16111 * 179.97438 * 8 7 6 31 31 H 1.08003 * 120.25824 * 179.97438 * 11 9 8 32 32 H 0.96998 * 120.00432 * 176.99360 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 7 1.7471 -0.3078 2.5122 6 6 2.3285 -1.1310 3.3719 7 6 2.3774 -1.2019 4.7798 8 6 3.0813 -2.1986 5.3817 9 6 3.7635 -3.1620 4.6421 10 9 4.4484 -4.1310 5.2878 11 6 3.7529 -3.1452 3.2628 12 6 3.0473 -2.1461 2.5945 13 6 2.8066 -1.8149 1.1925 14 6 3.2817 -2.4987 0.0789 15 1 3.4885 -1.9632 -0.8359 16 6 3.4924 -3.8845 0.1438 17 7 2.9120 -4.5908 1.0780 18 14 4.6022 -4.7200 -1.1051 19 1 5.9971 -4.7347 -0.5961 20 1 4.1401 -6.1143 -1.3234 21 1 4.5515 -3.9751 -2.3889 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.8584 -0.4675 5.3778 30 1 3.1127 -2.2436 6.4604 31 1 4.2877 -3.8998 2.7052 32 1 3.0225 -5.5543 1.0968 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220257842.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:11 Heat of formation + Delta-G solvation = 19.922578 kcal Electronic energy + Delta-G solvation = -17913.458837 eV Core-core repulsion = 14982.037998 eV Total energy + Delta-G solvation = -2931.420839 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.43105 -39.25068 -36.10841 -34.33849 -33.52285 -30.39324 -28.97599 -27.79496 -26.79919 -25.12064 -23.08678 -20.79270 -20.24796 -19.26044 -17.23873 -16.43941 -15.78500 -15.36841 -14.52986 -14.28038 -14.25048 -13.76065 -13.70518 -13.02705 -12.76689 -12.37687 -12.14419 -12.08006 -11.84651 -11.74825 -11.52262 -11.34836 -10.95514 -10.93292 -10.72962 -10.53549 -9.97172 -9.89255 -9.43667 -8.75615 -8.52917 -7.48569 -7.21927 -6.40675 -4.74822 2.00107 2.75372 2.85174 2.88898 3.01852 3.53503 3.66126 3.78447 4.55986 5.15455 5.20845 5.53657 5.55962 5.69588 5.75719 5.91615 6.01213 6.03867 6.18837 6.21938 6.36896 6.49500 6.62447 6.65291 6.67259 6.87755 6.99695 7.30187 7.34364 7.50573 7.62217 7.85337 8.10962 8.16527 8.37729 8.66184 9.39176 9.67627 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.012592 C = 0.007107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.972215 B = 2223.013821 C = 3938.889554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.171 3.829 3 C -0.156 4.156 4 N -0.399 5.399 5 N -0.402 5.402 6 C 0.129 3.871 7 C -0.158 4.158 8 C -0.083 4.083 9 C -0.075 4.075 10 F -0.172 7.172 11 C 0.018 3.982 12 C -0.236 4.236 13 C 0.307 3.693 14 C -0.441 4.441 15 H 0.096 0.904 16 C 0.084 3.916 17 N -0.745 5.745 18 Si 0.923 3.077 19 H -0.260 1.260 20 H -0.271 1.271 21 H -0.257 1.257 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.093 0.907 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.032 2.289 -3.960 4.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.068 3.932 3 C -0.214 4.214 4 N -0.180 5.180 5 N -0.226 5.226 6 C -0.025 4.025 7 C -0.180 4.180 8 C -0.105 4.105 9 C -0.097 4.097 10 F -0.152 7.152 11 C -0.002 4.002 12 C -0.246 4.246 13 C 0.181 3.819 14 C -0.476 4.476 15 H 0.114 0.886 16 C -0.143 4.143 17 N -0.367 5.367 18 Si 0.745 3.255 19 H -0.184 1.184 20 H -0.196 1.196 21 H -0.181 1.181 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.111 0.889 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.816 3.240 -4.013 5.222 hybrid contribution 0.983 -1.398 -0.328 1.741 sum 0.167 1.841 -4.341 4.719 Atomic orbital electron populations 1.22038 0.94835 1.02358 1.01831 1.20809 0.94398 0.92608 0.85430 1.22106 1.01321 0.95987 1.02025 1.48727 1.40115 1.24824 1.04325 1.76980 1.32429 1.27452 0.85748 1.20648 0.95013 0.93181 0.93689 1.19201 1.07049 1.01595 0.90195 1.20102 0.97624 0.94495 0.98290 1.16933 1.08436 0.94192 0.90093 1.91290 1.79268 1.62509 1.82096 1.20135 0.94194 0.95130 0.90781 1.19870 1.11794 1.01908 0.91025 1.19477 0.86096 0.83497 0.92814 1.18638 1.38315 0.92708 0.97986 0.88581 1.26011 0.94352 0.97329 0.96642 1.69790 1.29444 1.09185 1.28297 0.86050 0.80504 0.78572 0.80342 1.18429 1.19592 1.18085 0.91700 0.92419 0.92190 0.88876 0.91603 0.92705 0.92142 0.87318 0.87283 0.86641 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.43 37.16 0.35 -2.18 16 2 C 0.17 3.15 3.61 -67.93 -0.25 2.91 16 3 C -0.16 -2.50 9.43 37.16 0.35 -2.15 16 4 N -0.40 -9.35 3.33 -50.70 -0.17 -9.52 16 5 N -0.40 -10.12 12.23 33.19 0.41 -9.71 16 6 C 0.13 3.31 7.45 -83.12 -0.62 2.69 16 7 C -0.16 -3.61 10.09 -39.30 -0.40 -4.01 16 8 C -0.08 -1.83 9.86 -39.97 -0.39 -2.23 16 9 C -0.07 -1.80 7.27 -39.29 -0.29 -2.08 16 10 F -0.17 -3.98 17.24 2.25 0.04 -3.94 16 11 C 0.02 0.46 8.72 -39.26 -0.34 0.12 16 12 C -0.24 -6.20 5.90 -102.93 -0.61 -6.81 16 13 C 0.31 7.70 6.54 -81.98 -0.54 7.17 16 14 C -0.44 -10.22 8.61 -38.50 -0.33 -10.55 16 15 H 0.10 2.03 7.33 -52.49 -0.38 1.65 16 16 C 0.08 1.85 4.92 -17.25 -0.08 1.77 16 17 N -0.74 -17.46 10.28 55.57 0.57 -16.89 16 18 Si 0.92 16.28 29.61 -169.99 -5.03 11.24 16 19 H -0.26 -4.64 7.11 56.52 0.40 -4.23 16 20 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 21 H -0.26 -4.38 7.11 56.52 0.40 -3.98 16 22 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.09 1.63 6.92 -51.93 -0.36 1.27 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.11 2.21 8.06 -52.49 -0.42 1.79 16 30 H 0.11 2.05 8.06 -52.48 -0.42 1.62 16 31 H 0.12 2.89 6.40 -52.48 -0.34 2.55 16 32 H 0.30 6.25 8.30 -40.82 -0.34 5.91 16 LS Contribution 279.75 15.07 4.22 4.22 Total: -1.00 -27.75 279.75 -6.71 -34.46 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -3.60 Total: 5.50 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -3.14 Total: -15.35 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.81 Total: -36.12 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.04 Total: -3.94 kcal Atomic # 14 Polarization: 16.28 SS G_CDS: -5.03 Total: 11.24 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.75 -6.71 -34.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220257842.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.382 kcal (2) G-P(sol) polarization free energy of solvation -27.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds