Wall clock time and date at job start Mon Mar 30 2020 06:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47081 * 2 1 4 4 N 1.46502 * 109.47161 * 120.00302 * 2 1 3 5 5 N 1.39718 * 125.10969 * 300.02149 * 4 2 1 6 6 C 1.32470 * 110.84444 * 179.97438 * 5 4 2 7 7 C 1.41055 * 133.96875 * 180.02562 * 6 5 4 8 8 C 1.36061 * 119.75507 * 179.97438 * 7 6 5 9 9 C 1.39300 * 121.67507 * 0.02907 * 8 7 6 10 10 F 1.35098 * 119.37392 * 179.97438 * 9 8 7 11 11 C 1.37946 * 121.24701 * 359.97058 * 9 8 7 12 12 C 1.39382 * 119.47305 * 0.02562 * 11 9 8 13 13 C 1.37303 * 125.11362 * 119.72132 * 4 2 1 14 14 C 1.39043 * 126.94069 * 359.97438 * 13 4 2 15 15 H 1.08002 * 119.99402 * 30.85967 * 14 13 4 16 16 C 1.40324 * 120.00078 * 210.85668 * 14 13 4 17 17 N 1.30706 * 120.00105 * 19.17868 * 16 14 13 18 18 Si 1.86798 * 120.00062 * 199.17351 * 16 14 13 19 19 H 1.48499 * 109.47216 * 89.99936 * 18 16 14 20 20 H 1.48503 * 109.47247 * 210.00321 * 18 16 14 21 21 H 1.48505 * 109.47299 * 329.99863 * 18 16 14 22 22 H 1.09003 * 109.47214 * 299.99625 * 1 2 3 23 23 H 1.09004 * 109.47090 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46960 * 59.99672 * 1 2 3 25 25 H 1.09003 * 109.47214 * 240.00374 * 2 1 3 26 26 H 1.09003 * 109.47295 * 60.00269 * 3 2 1 27 27 H 1.09000 * 109.47286 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47491 * 300.00003 * 3 2 1 29 29 H 1.07995 * 120.12018 * 359.95387 * 7 6 5 30 30 H 1.08003 * 119.16111 * 179.97438 * 8 7 6 31 31 H 1.08003 * 120.25824 * 179.97438 * 11 9 8 32 32 H 0.96998 * 120.00432 * 176.99360 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 7 1.7471 -0.3078 2.5122 6 6 2.3285 -1.1310 3.3719 7 6 2.3774 -1.2019 4.7798 8 6 3.0813 -2.1986 5.3817 9 6 3.7635 -3.1620 4.6421 10 9 4.4484 -4.1310 5.2878 11 6 3.7529 -3.1452 3.2628 12 6 3.0473 -2.1461 2.5945 13 6 2.8066 -1.8149 1.1925 14 6 3.2817 -2.4987 0.0789 15 1 3.4885 -1.9632 -0.8359 16 6 3.4924 -3.8845 0.1438 17 7 2.9120 -4.5908 1.0780 18 14 4.6022 -4.7200 -1.1051 19 1 5.9971 -4.7347 -0.5961 20 1 4.1401 -6.1143 -1.3234 21 1 4.5515 -3.9751 -2.3889 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.8584 -0.4675 5.3778 30 1 3.1127 -2.2436 6.4604 31 1 4.2877 -3.8998 2.7052 32 1 3.0225 -5.5543 1.0968 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220257842.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:10 Heat of formation + Delta-G solvation = 5.447235 kcal Electronic energy + Delta-G solvation = -17914.086535 eV Core-core repulsion = 14982.037998 eV Total energy + Delta-G solvation = -2932.048537 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.29303 -41.03536 -37.80446 -36.04666 -35.12552 -32.21549 -30.76167 -29.55547 -28.10836 -26.93547 -24.79721 -22.59917 -21.95446 -20.96908 -18.99324 -18.19119 -17.53247 -17.08394 -16.18781 -16.09158 -15.93421 -15.39704 -15.22208 -14.69654 -14.51881 -13.96980 -13.76639 -13.73672 -13.47213 -13.10383 -13.05495 -12.90430 -12.58243 -12.39438 -12.13907 -12.01497 -11.62086 -11.61836 -11.15271 -10.61809 -10.40237 -9.26928 -8.93207 -8.24676 -6.57077 0.19337 1.07674 1.36653 1.41091 1.55228 1.88415 2.06159 2.19321 2.83348 3.29088 3.62592 3.91158 4.03196 4.15112 4.23218 4.27607 4.58934 4.63413 4.72627 4.77272 4.86400 4.87340 4.93854 5.03408 5.14912 5.28720 5.30483 5.51490 5.63104 5.68108 5.76737 6.06951 6.26165 6.40487 6.54806 6.92801 7.53074 8.02731 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.012592 C = 0.007107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.972215 B = 2223.013821 C = 3938.889554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.154 3.846 3 C -0.145 4.145 4 N -0.403 5.403 5 N -0.417 5.417 6 C 0.101 3.899 7 C -0.161 4.161 8 C -0.078 4.078 9 C -0.086 4.086 10 F -0.169 7.169 11 C 0.002 3.998 12 C -0.268 4.268 13 C 0.278 3.722 14 C -0.452 4.452 15 H 0.113 0.887 16 C 0.049 3.951 17 N -0.779 5.779 18 Si 0.996 3.004 19 H -0.263 1.263 20 H -0.264 1.264 21 H -0.242 1.242 22 H 0.049 0.951 23 H 0.037 0.963 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.102 0.898 29 H 0.134 0.866 30 H 0.147 0.853 31 H 0.108 0.892 32 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.193 2.583 -5.173 5.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.053 3.947 3 C -0.203 4.203 4 N -0.185 5.185 5 N -0.241 5.241 6 C -0.053 4.053 7 C -0.184 4.184 8 C -0.099 4.099 9 C -0.107 4.107 10 F -0.149 7.149 11 C -0.019 4.019 12 C -0.278 4.278 13 C 0.152 3.848 14 C -0.487 4.487 15 H 0.131 0.869 16 C -0.176 4.176 17 N -0.402 5.402 18 Si 0.814 3.186 19 H -0.188 1.188 20 H -0.189 1.189 21 H -0.165 1.165 22 H 0.068 0.932 23 H 0.056 0.944 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.121 0.879 29 H 0.152 0.848 30 H 0.165 0.835 31 H 0.126 0.874 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.679 3.562 -5.227 6.362 hybrid contribution 0.896 -1.481 0.049 1.732 sum 0.217 2.080 -5.179 5.585 Atomic orbital electron populations 1.21973 0.93409 1.01474 1.03187 1.21304 0.95630 0.93771 0.84043 1.22025 1.00583 0.94409 1.03275 1.49080 1.39777 1.24889 1.04730 1.76830 1.32719 1.27801 0.86791 1.21163 0.95618 0.93479 0.95025 1.19564 1.07051 1.02292 0.89457 1.20407 0.96252 0.93220 1.00070 1.17164 1.08775 0.94792 0.89987 1.91288 1.79230 1.62451 1.81888 1.20178 0.94904 0.95240 0.91531 1.20259 1.12751 1.02652 0.92108 1.19892 0.87166 0.84549 0.93166 1.19059 1.38046 0.93502 0.98077 0.86922 1.26969 0.94902 0.97375 0.98341 1.69847 1.30543 1.09890 1.29939 0.84980 0.77761 0.77727 0.78150 1.18782 1.18861 1.16462 0.93209 0.94367 0.87852 0.87946 0.93174 0.93728 0.87936 0.84812 0.83545 0.87403 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 9.43 71.98 0.68 -3.87 16 2 C 0.15 5.54 3.61 44.99 0.16 5.71 16 3 C -0.15 -4.40 9.43 71.98 0.68 -3.72 16 4 N -0.40 -19.08 3.33 -314.30 -1.05 -20.12 16 5 N -0.42 -21.32 12.23 -48.89 -0.60 -21.92 16 6 C 0.10 5.28 7.45 41.94 0.31 5.59 16 7 C -0.16 -7.30 10.09 22.45 0.23 -7.07 16 8 C -0.08 -3.35 9.86 22.02 0.22 -3.13 16 9 C -0.09 -4.11 7.27 22.46 0.16 -3.94 16 10 F -0.17 -7.74 17.24 44.97 0.78 -6.97 16 11 C 0.00 0.11 8.72 22.48 0.20 0.30 16 12 C -0.27 -14.42 5.90 -18.77 -0.11 -14.53 16 13 C 0.28 14.22 6.54 40.51 0.26 14.48 16 14 C -0.45 -20.93 8.61 22.97 0.20 -20.73 16 15 H 0.11 4.66 7.33 -2.91 -0.02 4.64 16 16 C 0.05 2.13 4.92 85.37 0.42 2.55 16 17 N -0.78 -37.04 10.28 21.90 0.23 -36.81 16 18 Si 1.00 32.39 29.61 68.60 2.03 34.43 16 19 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 20 H -0.26 -8.25 7.11 99.48 0.71 -7.54 16 21 H -0.24 -7.23 7.11 99.48 0.71 -6.52 16 22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 24 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.10 3.45 6.92 -2.39 -0.02 3.43 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.13 5.26 8.06 -2.91 -0.02 5.23 16 30 H 0.15 5.11 8.06 -2.91 -0.02 5.08 16 31 H 0.11 5.58 6.40 -2.91 -0.02 5.56 16 32 H 0.30 12.93 8.30 -92.71 -0.77 12.16 16 Total: -1.00 -61.00 279.75 5.93 -55.07 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 1.13 Total: 24.70 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 3.41 Total: -28.38 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -1.42 Total: -78.85 kcal Atomic # 9 Polarization: -7.74 SS G_CDS: 0.78 Total: -6.97 kcal Atomic # 14 Polarization: 32.39 SS G_CDS: 2.03 Total: 34.43 kcal Total: -61.00 5.93 -55.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220257842.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.519 kcal (2) G-P(sol) polarization free energy of solvation -60.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds