Wall clock time and date at job start Mon Mar 30 2020 06:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46820 * 2 1 4 4 N 1.39959 * 125.03339 * 90.02986 * 3 2 1 5 5 C 1.32065 * 108.95149 * 179.97438 * 4 3 2 6 6 C 1.47085 * 106.78160 * 0.22176 * 5 4 3 7 7 C 1.41200 * 118.77889 * 180.32168 * 6 5 4 8 8 C 1.35635 * 119.57385 * 359.50663 * 7 6 5 9 9 C 1.39674 * 121.75230 * 0.25567 * 8 7 6 10 10 C 1.35842 * 121.78623 * 0.02562 * 9 8 7 11 11 F 1.35103 * 120.22047 * 179.97438 * 10 9 8 12 12 C 1.34052 * 125.03321 * 270.02880 * 3 2 1 13 13 C 1.50697 * 126.04733 * 0.02562 * 12 3 2 14 14 C 1.50693 * 109.47175 * 90.00345 * 13 12 3 15 15 H 1.08000 * 120.00134 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00184 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00324 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99999 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47241 * 90.00049 * 18 16 14 20 20 H 1.48506 * 109.47313 * 210.00300 * 18 16 14 21 21 H 1.48501 * 109.47081 * 330.00060 * 18 16 14 22 22 H 1.09006 * 109.47034 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46799 * 299.99616 * 1 2 3 24 24 H 1.08995 * 109.47420 * 59.99863 * 1 2 3 25 25 H 1.08996 * 109.46799 * 240.00384 * 2 1 3 26 26 H 1.08995 * 109.47420 * 120.00137 * 2 1 3 27 27 H 1.08002 * 120.21643 * 179.79114 * 7 6 5 28 28 H 1.08005 * 119.12578 * 180.23407 * 8 7 6 29 29 H 1.07994 * 119.11005 * 179.97438 * 9 8 7 30 30 H 1.09003 * 109.47219 * 210.00182 * 13 12 3 31 31 H 1.08999 * 109.46943 * 330.00243 * 13 12 3 32 32 H 0.96994 * 120.00144 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2866 2.1385 1.1460 5 6 2.7099 3.3348 0.7802 6 6 2.7104 3.3537 -0.6906 7 6 3.1313 4.5262 -1.3552 8 6 3.5141 5.6063 -0.6295 9 6 3.5095 5.5926 0.7671 10 6 3.1222 4.4970 1.4707 11 9 3.1306 4.5184 2.8215 12 6 2.2742 2.1069 -1.0976 13 6 2.1102 1.6467 -2.5232 14 6 0.7162 1.9673 -2.9973 15 1 0.0186 2.4552 -2.3327 16 6 0.3310 1.6369 -4.2793 17 7 -0.8858 1.9163 -4.6929 18 14 1.5372 0.7924 -5.4286 19 1 1.4157 -0.6800 -5.2788 20 1 1.2343 1.1740 -6.8315 21 1 2.9208 1.2120 -5.0894 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.1441 4.5644 -2.4345 28 1 3.8311 6.5007 -1.1454 29 1 3.8232 6.4766 1.3023 30 1 2.8358 2.1580 -3.1559 31 1 2.2743 0.5705 -2.5787 32 1 -1.1567 1.6842 -5.5949 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220258405.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:01 Heat of formation + Delta-G solvation = 36.290979 kcal Electronic energy + Delta-G solvation = -17684.579262 eV Core-core repulsion = 14753.868211 eV Total energy + Delta-G solvation = -2930.711052 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.36780 -40.87548 -36.91638 -33.87294 -33.25818 -31.71394 -29.59593 -29.04452 -27.26635 -24.48405 -22.96031 -21.71471 -21.47391 -18.98465 -17.31329 -17.11171 -16.42002 -15.72766 -15.35041 -14.92079 -14.79113 -14.55619 -14.09543 -13.71398 -13.07704 -12.75510 -12.50179 -12.35986 -12.13197 -11.74901 -11.54284 -11.31345 -10.95990 -10.89672 -10.79029 -10.67948 -10.34891 -9.97719 -9.70126 -9.28575 -8.81519 -8.25400 -6.98092 -6.29719 -4.33255 1.01745 2.17813 2.72776 2.86445 3.11226 3.20981 3.22243 4.15397 4.19590 4.51747 4.61926 4.99737 5.13756 5.17745 5.30995 5.45487 5.47794 5.66102 5.72691 5.86733 5.94137 5.95672 6.18236 6.40065 6.56302 6.58466 6.61995 6.80779 6.84417 7.04679 7.25915 7.30095 7.42663 8.10303 8.21346 8.72786 9.26569 10.82056 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.024152 B = 0.007682 C = 0.006398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.026267 B = 3644.130443 C = 4375.652435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.124 3.876 3 N -0.319 5.319 4 N -0.321 5.321 5 C 0.076 3.924 6 C -0.208 4.208 7 C -0.010 4.010 8 C -0.175 4.175 9 C -0.105 4.105 10 C 0.089 3.911 11 F -0.144 7.144 12 C 0.184 3.816 13 C 0.037 3.963 14 C -0.522 4.522 15 H 0.077 0.923 16 C 0.079 3.921 17 N -0.888 5.888 18 Si 0.873 3.127 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.263 1.263 22 H 0.073 0.927 23 H 0.058 0.942 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.129 0.871 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.052 0.948 31 H 0.032 0.968 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.439 0.263 5.664 9.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.004 3.996 3 N -0.092 5.092 4 N -0.147 5.147 5 C -0.078 4.078 6 C -0.217 4.217 7 C -0.030 4.030 8 C -0.195 4.195 9 C -0.128 4.128 10 C 0.067 3.933 11 F -0.123 7.123 12 C 0.046 3.954 13 C -0.002 4.002 14 C -0.560 4.560 15 H 0.096 0.904 16 C -0.125 4.125 17 N -0.524 5.524 18 Si 0.699 3.301 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.187 1.187 22 H 0.092 0.908 23 H 0.077 0.923 24 H 0.108 0.892 25 H 0.118 0.882 26 H 0.109 0.891 27 H 0.147 0.853 28 H 0.142 0.858 29 H 0.147 0.853 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.962 -0.732 6.633 9.644 hybrid contribution 0.534 0.028 -1.034 1.165 sum 7.497 -0.704 5.598 9.383 Atomic orbital electron populations 1.22212 0.93267 1.03029 1.04598 1.21820 0.96438 0.77298 1.04079 1.48650 1.44970 1.12190 1.03413 1.77640 1.28136 1.03865 1.05053 1.20715 1.00297 0.93044 0.93784 1.19083 1.15351 0.95873 0.91420 1.20398 0.92659 0.90289 0.99669 1.20095 1.07789 0.99258 0.92347 1.20460 1.00839 0.96422 0.95120 1.16162 1.08157 0.93026 0.75981 1.91436 1.94779 1.96921 1.29171 1.21955 0.91587 0.90302 0.91549 1.18658 1.00212 0.96917 0.84365 1.20681 0.94766 1.41351 0.99218 0.90443 1.24908 0.95057 0.94974 0.97544 1.69868 1.17731 1.46301 1.18545 0.86890 0.82162 0.80277 0.80782 1.19950 1.20805 1.18718 0.90842 0.92311 0.89243 0.88222 0.89118 0.85267 0.85783 0.85283 0.93028 0.95012 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 10.24 37.16 0.38 -2.33 16 2 C 0.12 1.94 6.86 -4.04 -0.03 1.91 16 3 N -0.32 -6.26 3.55 -56.61 -0.20 -6.46 16 4 N -0.32 -6.79 12.54 33.28 0.42 -6.37 16 5 C 0.08 1.58 7.48 -83.00 -0.62 0.96 16 6 C -0.21 -4.24 6.26 -105.19 -0.66 -4.90 16 7 C -0.01 -0.17 10.09 -39.39 -0.40 -0.57 16 8 C -0.18 -2.65 9.90 -39.98 -0.40 -3.05 16 9 C -0.11 -1.63 9.87 -39.90 -0.39 -2.02 16 10 C 0.09 1.65 7.33 -39.26 -0.29 1.36 16 11 F -0.14 -2.65 17.28 2.25 0.04 -2.62 16 12 C 0.18 3.82 6.17 -81.63 -0.50 3.32 16 13 C 0.04 0.79 4.25 -29.04 -0.12 0.67 16 14 C -0.52 -13.22 9.12 -34.44 -0.31 -13.53 16 15 H 0.08 2.22 7.98 -52.49 -0.42 1.80 16 16 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.89 -24.96 13.96 55.43 0.77 -24.19 16 18 Si 0.87 19.07 27.47 -169.99 -4.67 14.40 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 22 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.09 1.71 7.60 -51.93 -0.39 1.31 16 25 H 0.10 1.42 6.90 -51.93 -0.36 1.06 16 26 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 28 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 29 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 30 H 0.05 1.07 7.20 -51.93 -0.37 0.70 16 31 H 0.03 0.63 6.38 -51.93 -0.33 0.30 16 32 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 281.55 15.07 4.24 4.24 Total: -1.00 -29.56 281.55 -6.42 -35.98 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -3.58 Total: 1.23 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -3.44 Total: -16.22 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.99 Total: -37.02 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.67 Total: 14.40 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.56 -6.42 -35.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220258405.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.273 kcal (2) G-P(sol) polarization free energy of solvation -29.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds