Wall clock time and date at job start Mon Mar 30 2020 06:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46820 * 2 1 4 4 N 1.39959 * 125.03339 * 90.02986 * 3 2 1 5 5 C 1.32065 * 108.95149 * 179.97438 * 4 3 2 6 6 C 1.47085 * 106.78160 * 0.22176 * 5 4 3 7 7 C 1.41200 * 118.77889 * 180.32168 * 6 5 4 8 8 C 1.35635 * 119.57385 * 359.50663 * 7 6 5 9 9 C 1.39674 * 121.75230 * 0.25567 * 8 7 6 10 10 C 1.35842 * 121.78623 * 0.02562 * 9 8 7 11 11 F 1.35103 * 120.22047 * 179.97438 * 10 9 8 12 12 C 1.34052 * 125.03321 * 270.02880 * 3 2 1 13 13 C 1.50697 * 126.04733 * 0.02562 * 12 3 2 14 14 C 1.50693 * 109.47175 * 90.00345 * 13 12 3 15 15 H 1.08000 * 120.00134 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00184 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00324 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99999 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47241 * 90.00049 * 18 16 14 20 20 H 1.48506 * 109.47313 * 210.00300 * 18 16 14 21 21 H 1.48501 * 109.47081 * 330.00060 * 18 16 14 22 22 H 1.09006 * 109.47034 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46799 * 299.99616 * 1 2 3 24 24 H 1.08995 * 109.47420 * 59.99863 * 1 2 3 25 25 H 1.08996 * 109.46799 * 240.00384 * 2 1 3 26 26 H 1.08995 * 109.47420 * 120.00137 * 2 1 3 27 27 H 1.08002 * 120.21643 * 179.79114 * 7 6 5 28 28 H 1.08005 * 119.12578 * 180.23407 * 8 7 6 29 29 H 1.07994 * 119.11005 * 179.97438 * 9 8 7 30 30 H 1.09003 * 109.47219 * 210.00182 * 13 12 3 31 31 H 1.08999 * 109.46943 * 330.00243 * 13 12 3 32 32 H 0.96994 * 120.00144 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2866 2.1385 1.1460 5 6 2.7099 3.3348 0.7802 6 6 2.7104 3.3537 -0.6906 7 6 3.1313 4.5262 -1.3552 8 6 3.5141 5.6063 -0.6295 9 6 3.5095 5.5926 0.7671 10 6 3.1222 4.4970 1.4707 11 9 3.1306 4.5184 2.8215 12 6 2.2742 2.1069 -1.0976 13 6 2.1102 1.6467 -2.5232 14 6 0.7162 1.9673 -2.9973 15 1 0.0186 2.4552 -2.3327 16 6 0.3310 1.6369 -4.2793 17 7 -0.8858 1.9163 -4.6929 18 14 1.5372 0.7924 -5.4286 19 1 1.4157 -0.6800 -5.2788 20 1 1.2343 1.1740 -6.8315 21 1 2.9208 1.2120 -5.0894 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.1441 4.5644 -2.4345 28 1 3.8311 6.5007 -1.1454 29 1 3.8232 6.4766 1.3023 30 1 2.8358 2.1580 -3.1559 31 1 2.2743 0.5705 -2.5787 32 1 -1.1567 1.6842 -5.5949 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220258405.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:00 Heat of formation + Delta-G solvation = 19.053589 kcal Electronic energy + Delta-G solvation = -17685.326732 eV Core-core repulsion = 14753.868211 eV Total energy + Delta-G solvation = -2931.458521 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.75519 -42.33512 -38.26088 -35.59645 -34.72520 -33.40135 -31.11488 -30.42811 -28.86379 -25.87606 -24.74118 -23.09449 -22.85512 -20.47426 -19.05102 -18.68236 -17.88516 -17.17578 -16.78489 -16.35851 -16.25268 -16.04855 -15.66719 -15.01775 -14.78910 -14.25781 -14.03587 -13.78838 -13.62925 -13.14041 -12.93548 -12.76999 -12.49287 -12.32049 -12.21458 -12.16734 -11.97597 -11.66526 -11.47524 -10.84396 -10.78706 -9.64517 -8.43526 -8.28876 -6.38033 -0.38900 0.79409 1.28964 1.40997 1.42553 1.45829 1.54421 2.35884 2.77154 3.04465 3.15653 3.20948 3.80589 3.91381 4.03407 4.10937 4.18003 4.27071 4.42483 4.48939 4.66177 4.68745 4.83708 4.92711 4.97938 5.22637 5.26530 5.33419 5.40932 5.46865 5.67712 5.90018 6.00380 6.20874 6.60576 6.66555 7.25253 8.86451 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.024152 B = 0.007682 C = 0.006398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.026267 B = 3644.130443 C = 4375.652435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.319 5.319 4 N -0.347 5.347 5 C 0.053 3.947 6 C -0.224 4.224 7 C -0.034 4.034 8 C -0.154 4.154 9 C -0.084 4.084 10 C 0.059 3.941 11 F -0.149 7.149 12 C 0.158 3.842 13 C 0.047 3.953 14 C -0.516 4.516 15 H 0.025 0.975 16 C 0.023 3.977 17 N -0.941 5.941 18 Si 0.942 3.058 19 H -0.262 1.262 20 H -0.287 1.287 21 H -0.237 1.237 22 H 0.108 0.892 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.139 0.861 28 H 0.168 0.832 29 H 0.170 0.830 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.773 0.482 5.293 11.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.005 4.005 3 N -0.092 5.092 4 N -0.174 5.174 5 C -0.101 4.101 6 C -0.233 4.233 7 C -0.055 4.055 8 C -0.173 4.173 9 C -0.107 4.107 10 C 0.037 3.963 11 F -0.128 7.128 12 C 0.019 3.981 13 C 0.008 3.992 14 C -0.554 4.554 15 H 0.043 0.957 16 C -0.176 4.176 17 N -0.581 5.581 18 Si 0.765 3.235 19 H -0.186 1.186 20 H -0.213 1.213 21 H -0.160 1.160 22 H 0.127 0.873 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.134 0.866 26 H 0.135 0.865 27 H 0.157 0.843 28 H 0.185 0.815 29 H 0.188 0.812 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.312 -0.514 6.288 11.248 hybrid contribution -0.239 0.083 -0.819 0.857 sum 9.073 -0.431 5.469 10.603 Atomic orbital electron populations 1.22112 0.93650 1.04457 1.01877 1.22190 0.96065 0.76086 1.06193 1.48928 1.44449 1.13092 1.02773 1.77526 1.29202 1.04643 1.06032 1.21163 1.00819 0.93651 0.94466 1.19514 1.15444 0.96674 0.91685 1.20703 0.93885 0.90360 1.00532 1.20618 1.04797 0.99662 0.92250 1.20976 0.97821 0.96461 0.95417 1.16512 1.10141 0.93546 0.76130 1.91416 1.95025 1.96954 1.29405 1.21936 0.93382 0.91187 0.91593 1.18489 0.97593 0.98154 0.84934 1.20706 0.96005 1.40231 0.98481 0.95680 1.25810 0.96809 0.95690 0.99312 1.70034 1.20323 1.48510 1.19196 0.85782 0.80593 0.79498 0.77665 1.18631 1.21283 1.16010 0.87320 0.93365 0.93414 0.86554 0.86497 0.84286 0.81464 0.81248 0.91908 0.92975 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.18 10.24 71.98 0.74 -4.44 16 2 C 0.11 3.49 6.86 86.38 0.59 4.08 16 3 N -0.32 -12.62 3.55 -333.02 -1.18 -13.80 16 4 N -0.35 -14.88 12.54 -48.62 -0.61 -15.49 16 5 C 0.05 2.19 7.48 42.19 0.32 2.50 16 6 C -0.22 -9.10 6.26 -20.23 -0.13 -9.23 16 7 C -0.03 -1.16 10.09 22.39 0.23 -0.93 16 8 C -0.15 -4.12 9.90 22.01 0.22 -3.90 16 9 C -0.08 -2.33 9.87 22.06 0.22 -2.11 16 10 C 0.06 2.12 7.33 22.48 0.16 2.28 16 11 F -0.15 -5.38 17.28 44.97 0.78 -4.61 16 12 C 0.16 6.58 6.17 42.21 0.26 6.84 16 13 C 0.05 1.98 4.25 29.10 0.12 2.10 16 14 C -0.52 -26.82 9.12 25.60 0.23 -26.58 16 15 H 0.02 1.53 7.98 -2.91 -0.02 1.50 16 16 C 0.02 1.18 5.47 84.65 0.46 1.65 16 17 N -0.94 -54.64 13.96 21.45 0.30 -54.34 16 18 Si 0.94 38.46 27.47 68.60 1.88 40.34 16 19 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 20 H -0.29 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.24 -8.64 6.54 99.48 0.65 -7.99 16 22 H 0.11 2.61 8.14 -2.38 -0.02 2.59 16 23 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.05 1.91 7.60 -2.39 -0.02 1.90 16 25 H 0.12 3.13 6.90 -2.39 -0.02 3.11 16 26 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 27 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 28 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 29 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 30 H 0.06 2.49 7.20 -2.39 -0.02 2.48 16 31 H 0.05 1.97 6.38 -2.39 -0.02 1.95 16 32 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -67.47 281.55 5.67 -61.81 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 1.08 Total: 13.84 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: 3.43 Total: -27.74 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -1.49 Total: -83.64 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.78 Total: -4.61 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 1.88 Total: 40.34 kcal Total: -67.47 5.67 -61.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220258405.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.859 kcal (2) G-P(sol) polarization free energy of solvation -67.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds