Wall clock time and date at job start Mon Mar 30 2020 06:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99900 * 2 1 4 4 H 1.48492 * 109.47338 * 240.00103 * 3 2 1 5 5 H 1.48501 * 109.46876 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46977 * 120.00100 * 3 2 1 7 7 C 1.37871 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00383 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00135 * 0.02562 * 7 2 1 10 10 O 1.45202 * 109.47293 * 179.97438 * 9 7 2 11 11 C 1.34224 * 116.99624 * 179.97438 * 10 9 7 12 12 O 1.20820 * 120.00616 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.99521 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.46901 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47085 * 179.97438 * 14 13 11 16 16 C 1.50707 * 109.47301 * 179.97438 * 15 14 13 17 17 C 1.38238 * 119.99792 * 90.00016 * 16 15 14 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00179 * 269.97953 * 16 15 14 22 22 H 0.97001 * 119.99978 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46639 * 59.99751 * 9 7 2 24 24 H 1.08997 * 109.46527 * 300.00433 * 9 7 2 25 25 H 1.08992 * 109.47447 * 60.00332 * 13 11 10 26 26 H 1.08999 * 109.46636 * 299.99958 * 13 11 10 27 27 H 1.08995 * 109.47671 * 59.99705 * 14 13 11 28 28 H 1.09004 * 109.46984 * 299.99721 * 14 13 11 29 29 H 1.09005 * 109.47610 * 59.99944 * 15 14 13 30 30 H 1.09000 * 109.47256 * 299.99285 * 15 14 13 31 31 H 1.08005 * 120.00068 * 359.97438 * 17 16 15 32 32 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 34 34 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 35 35 H 1.07999 * 119.99968 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6966 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 8 2.1947 -3.6028 -0.0027 11 6 1.6816 -4.8431 -0.0033 12 8 0.4839 -5.0015 -0.0034 13 6 2.5997 -6.0382 -0.0037 14 6 1.7665 -7.3214 -0.0050 15 6 2.6985 -8.5347 -0.0061 16 6 1.8777 -9.7987 -0.0067 17 6 1.5010 -10.3775 -1.2042 18 6 0.7486 -11.5372 -1.2047 19 6 0.3735 -12.1183 -0.0079 20 6 0.7457 -11.5365 1.1896 21 6 1.5020 -10.3794 1.1902 22 1 -0.4850 0.8401 0.0004 23 1 0.6248 -2.5562 -0.8920 24 1 0.6241 -2.5574 0.8880 25 1 3.2284 -6.0138 0.8863 26 1 3.2286 -6.0129 -0.8937 27 1 1.1380 -7.3457 -0.8951 28 1 1.1373 -7.3469 0.8848 29 1 3.3273 -8.5107 0.8840 30 1 3.3273 -8.5091 -0.8961 31 1 1.7944 -9.9237 -2.1393 32 1 0.4539 -11.9892 -2.1402 33 1 -0.2140 -13.0246 -0.0084 34 1 0.4489 -11.9881 2.1247 35 1 1.7970 -9.9276 2.1257 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223732615.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:58 Heat of formation + Delta-G solvation = -90.740331 kcal Electronic energy + Delta-G solvation = -16571.691468 eV Core-core repulsion = 13726.639480 eV Total energy + Delta-G solvation = -2845.051989 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.63922 -39.26876 -35.84914 -34.77397 -32.86822 -31.36095 -31.03027 -28.13938 -26.86576 -23.48251 -22.71886 -22.25966 -20.89058 -19.74905 -17.15136 -16.71379 -16.36541 -16.05865 -15.52113 -15.29423 -15.06115 -14.40014 -14.14567 -13.57498 -13.53119 -13.15310 -12.57176 -12.45926 -12.12735 -11.74211 -11.70049 -11.30828 -11.18425 -11.09853 -10.95906 -10.93761 -10.65623 -10.31054 -9.63808 -9.62516 -9.33024 -9.06519 -8.82198 -8.50535 -6.20876 -4.26490 1.21051 1.25640 3.00575 3.26815 3.29450 3.32280 3.57473 3.76129 4.33847 4.60785 4.67905 4.85031 4.96303 5.03068 5.14932 5.18259 5.26000 5.34140 5.37673 5.55248 5.61974 5.72309 5.88580 5.88772 5.99947 6.11864 6.31750 6.34853 6.36212 6.52169 6.86701 6.92849 7.24441 7.50629 7.83120 8.05188 8.63940 8.88123 9.38212 10.89825 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.064910 B = 0.003061 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.265735 B = 9145.657145 C = 9256.529537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.915 3.085 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.071 0.929 9 C 0.205 3.795 10 O -0.361 6.361 11 C 0.447 3.553 12 O -0.524 6.524 13 C -0.115 4.115 14 C -0.102 4.102 15 C -0.082 4.082 16 C -0.077 4.077 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.129 4.129 20 C -0.120 4.120 21 C -0.117 4.117 22 H 0.268 0.732 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.910 -21.621 -0.015 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.741 3.259 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.089 0.911 9 C 0.133 3.867 10 O -0.277 6.277 11 C 0.290 3.710 12 O -0.415 6.415 13 C -0.153 4.153 14 C -0.139 4.139 15 C -0.119 4.119 16 C -0.077 4.077 17 C -0.135 4.135 18 C -0.138 4.138 19 C -0.147 4.147 20 C -0.138 4.138 21 C -0.135 4.135 22 H 0.078 0.922 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.384 -21.477 -0.015 21.920 hybrid contribution 0.093 0.922 0.000 0.926 sum 4.477 -20.555 -0.015 21.037 Atomic orbital electron populations 1.69976 1.06157 1.27710 1.49125 1.24971 0.95049 0.99549 0.94738 0.86288 0.79234 0.81400 0.78934 1.19845 1.20984 1.19849 1.20982 0.94214 0.88821 1.52758 0.91108 1.20902 0.87573 0.80232 0.97950 1.86439 1.44234 1.15219 1.81824 1.23473 0.88444 0.85880 0.73172 1.90609 1.17333 1.87301 1.46228 1.21349 0.98144 0.90492 1.05301 1.21375 0.97477 0.90900 1.04185 1.20657 0.96956 0.91102 1.03225 1.19931 0.98241 0.96289 0.93200 1.21099 0.98697 0.95972 0.97751 1.21145 0.98425 0.96147 0.98053 1.21129 1.00639 1.00218 0.92715 1.21145 0.98402 0.96170 0.98049 1.21097 0.98671 0.95997 0.97755 0.92232 0.95401 0.95390 0.88230 0.88237 0.90898 0.90893 0.90670 0.90665 0.86004 0.86210 0.86350 0.86208 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -15.43 9.44 -34.44 -0.33 -15.76 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.20 5.79 5.22 36.01 0.19 5.98 16 10 O -0.36 -8.76 10.20 -39.24 -0.40 -9.16 16 11 C 0.45 9.26 7.96 36.01 0.29 9.55 16 12 O -0.52 -12.47 15.73 -18.74 -0.29 -12.76 16 13 C -0.12 -1.59 5.81 -27.88 -0.16 -1.75 16 14 C -0.10 -1.28 4.49 -26.74 -0.12 -1.40 16 15 C -0.08 -0.79 5.34 -27.88 -0.15 -0.94 16 16 C -0.08 -0.80 5.13 -104.62 -0.54 -1.34 16 17 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 18 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 19 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 20 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 21 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 22 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.03 0.84 8.13 -51.93 -0.42 0.41 16 24 H 0.03 0.84 8.13 -51.93 -0.42 0.42 16 25 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 28 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 29 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 30 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 31 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 32 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 309.81 15.07 4.67 4.67 Total: -1.00 -33.03 309.81 -8.22 -41.25 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -5.03 Total: -2.57 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -2.88 Total: -11.80 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.74 Total: -26.07 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.70 Total: -21.92 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.03 -8.22 -41.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223732615.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.487 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds