Wall clock time and date at job start Mon Mar 30 2020 06:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99900 * 2 1 4 4 H 1.48492 * 109.47338 * 240.00103 * 3 2 1 5 5 H 1.48501 * 109.46876 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46977 * 120.00100 * 3 2 1 7 7 C 1.37871 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00383 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00135 * 0.02562 * 7 2 1 10 10 O 1.45202 * 109.47293 * 179.97438 * 9 7 2 11 11 C 1.34224 * 116.99624 * 179.97438 * 10 9 7 12 12 O 1.20820 * 120.00616 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.99521 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.46901 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47085 * 179.97438 * 14 13 11 16 16 C 1.50707 * 109.47301 * 179.97438 * 15 14 13 17 17 C 1.38238 * 119.99792 * 90.00016 * 16 15 14 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38234 * 120.00179 * 269.97953 * 16 15 14 22 22 H 0.97001 * 119.99978 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46639 * 59.99751 * 9 7 2 24 24 H 1.08997 * 109.46527 * 300.00433 * 9 7 2 25 25 H 1.08992 * 109.47447 * 60.00332 * 13 11 10 26 26 H 1.08999 * 109.46636 * 299.99958 * 13 11 10 27 27 H 1.08995 * 109.47671 * 59.99705 * 14 13 11 28 28 H 1.09004 * 109.46984 * 299.99721 * 14 13 11 29 29 H 1.09005 * 109.47610 * 59.99944 * 15 14 13 30 30 H 1.09000 * 109.47256 * 299.99285 * 15 14 13 31 31 H 1.08005 * 120.00068 * 359.97438 * 17 16 15 32 32 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 34 34 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 35 35 H 1.07999 * 119.99968 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6966 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 8 2.1947 -3.6028 -0.0027 11 6 1.6816 -4.8431 -0.0033 12 8 0.4839 -5.0015 -0.0034 13 6 2.5997 -6.0382 -0.0037 14 6 1.7665 -7.3214 -0.0050 15 6 2.6985 -8.5347 -0.0061 16 6 1.8777 -9.7987 -0.0067 17 6 1.5010 -10.3775 -1.2042 18 6 0.7486 -11.5372 -1.2047 19 6 0.3735 -12.1183 -0.0079 20 6 0.7457 -11.5365 1.1896 21 6 1.5020 -10.3794 1.1902 22 1 -0.4850 0.8401 0.0004 23 1 0.6248 -2.5562 -0.8920 24 1 0.6241 -2.5574 0.8880 25 1 3.2284 -6.0138 0.8863 26 1 3.2286 -6.0129 -0.8937 27 1 1.1380 -7.3457 -0.8951 28 1 1.1373 -7.3469 0.8848 29 1 3.3273 -8.5107 0.8840 30 1 3.3273 -8.5091 -0.8961 31 1 1.7944 -9.9237 -2.1393 32 1 0.4539 -11.9892 -2.1402 33 1 -0.2140 -13.0246 -0.0084 34 1 0.4489 -11.9881 2.1247 35 1 1.7970 -9.9276 2.1257 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223732615.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:58 Heat of formation + Delta-G solvation = -108.731341 kcal Electronic energy + Delta-G solvation = -16572.471617 eV Core-core repulsion = 13726.639480 eV Total energy + Delta-G solvation = -2845.832137 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.29697 -40.12104 -37.62478 -35.89242 -35.06290 -32.34284 -31.72562 -30.12224 -28.07344 -25.23464 -23.69925 -23.42283 -21.74729 -21.32113 -18.94395 -18.32311 -17.67550 -17.58019 -17.13328 -16.35762 -16.32651 -15.87039 -15.32193 -14.61152 -14.42027 -14.28149 -14.10455 -13.89666 -13.53143 -13.16765 -12.90361 -12.88871 -12.74680 -12.45983 -12.21596 -11.96145 -11.77461 -11.71823 -11.60154 -11.53410 -11.31395 -10.70495 -9.78172 -9.56183 -8.40272 -6.57840 0.48210 0.53927 1.31133 1.39938 1.46217 1.54611 2.01268 2.39597 2.92208 2.93856 3.72056 3.88623 3.94547 4.14559 4.18456 4.27052 4.35626 4.50640 4.53547 4.64375 4.69346 4.77204 4.78494 4.88677 4.89417 5.10539 5.19924 5.24903 5.37002 5.40192 5.61637 5.66131 5.68557 5.78058 5.97867 6.17775 6.52872 6.90677 7.15617 8.72129 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.064910 B = 0.003061 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.265735 B = 9145.657145 C = 9256.529537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.997 3.003 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.558 4.558 8 H 0.080 0.920 9 C 0.218 3.782 10 O -0.366 6.366 11 C 0.439 3.561 12 O -0.561 6.561 13 C -0.100 4.100 14 C -0.095 4.095 15 C -0.072 4.072 16 C -0.094 4.094 17 C -0.132 4.132 18 C -0.131 4.131 19 C -0.137 4.137 20 C -0.131 4.131 21 C -0.132 4.132 22 H 0.274 0.726 23 H -0.002 1.002 24 H -0.002 1.002 25 H 0.131 0.869 26 H 0.131 0.869 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.881 -21.947 -0.016 23.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.818 3.182 4 H -0.184 1.184 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.595 4.595 8 H 0.098 0.902 9 C 0.146 3.854 10 O -0.282 6.282 11 C 0.284 3.716 12 O -0.453 6.453 13 C -0.137 4.137 14 C -0.133 4.133 15 C -0.109 4.109 16 C -0.094 4.094 17 C -0.150 4.150 18 C -0.148 4.148 19 C -0.155 4.155 20 C -0.148 4.148 21 C -0.150 4.150 22 H 0.083 0.917 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.149 0.851 26 H 0.149 0.851 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.149 0.851 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.367 -21.842 -0.016 22.751 hybrid contribution -0.605 0.889 0.001 1.075 sum 5.762 -20.953 -0.016 21.731 Atomic orbital electron populations 1.70115 1.08230 1.29274 1.49346 1.26159 0.96014 1.03955 0.93309 0.85034 0.77880 0.75480 0.79807 1.18408 1.20179 1.18417 1.21345 0.94771 0.89487 1.53906 0.90233 1.20413 0.87766 0.82217 0.95047 1.86450 1.43198 1.16003 1.82525 1.24992 0.89228 0.86098 0.71248 1.90592 1.19511 1.87470 1.47753 1.21556 0.97170 0.86870 1.08132 1.21311 0.97664 0.91776 1.02529 1.20586 0.96330 0.89017 1.04931 1.20109 0.98939 0.96849 0.93537 1.21355 0.99034 0.96476 0.98172 1.21455 0.98206 0.96098 0.99080 1.21462 1.00520 1.00890 0.92578 1.21456 0.98187 0.96123 0.99076 1.21354 0.99006 0.96497 0.98177 0.91689 0.98443 0.98430 0.85139 0.85145 0.92666 0.92662 0.88953 0.88948 0.85105 0.84492 0.84362 0.84492 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 2 C 0.00 0.27 5.46 84.65 0.46 0.73 16 3 Si 1.00 43.39 29.54 68.60 2.03 45.42 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.56 -32.94 9.44 25.60 0.24 -32.70 16 8 H 0.08 4.44 7.81 -2.91 -0.02 4.42 16 9 C 0.22 12.85 5.22 71.24 0.37 13.22 16 10 O -0.37 -18.02 10.20 -51.36 -0.52 -18.55 16 11 C 0.44 18.34 7.96 71.24 0.57 18.91 16 12 O -0.56 -27.73 15.73 21.98 0.35 -27.38 16 13 C -0.10 -2.56 5.81 29.85 0.17 -2.39 16 14 C -0.09 -2.29 4.49 30.59 0.14 -2.16 16 15 C -0.07 -1.22 5.34 29.85 0.16 -1.06 16 16 C -0.09 -1.86 5.13 -19.86 -0.10 -1.97 16 17 C -0.13 -2.54 9.70 22.27 0.22 -2.32 16 18 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 19 C -0.14 -2.30 10.05 22.27 0.22 -2.08 16 20 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 21 C -0.13 -2.54 9.70 22.27 0.22 -2.32 16 22 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 23 H 0.00 -0.15 8.13 -2.39 -0.02 -0.17 16 24 H 0.00 -0.14 8.13 -2.39 -0.02 -0.16 16 25 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.13 2.63 8.14 -2.39 -0.02 2.62 16 27 H 0.05 1.52 8.10 -2.39 -0.02 1.50 16 28 H 0.05 1.52 8.10 -2.38 -0.02 1.50 16 29 H 0.09 1.27 8.09 -2.38 -0.02 1.26 16 30 H 0.09 1.27 8.09 -2.39 -0.02 1.26 16 31 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 32 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 34 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 35 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -73.75 309.81 6.30 -67.44 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 1.06 Total: 8.06 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 3.11 Total: -18.27 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.28 Total: -56.72 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: -0.18 Total: -45.93 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -73.75 6.30 -67.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223732615.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.288 kcal (2) G-P(sol) polarization free energy of solvation -73.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds