Wall clock time and date at job start Mon Mar 30 2020 06:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47249 * 2 1 4 4 C 1.50706 * 109.46617 * 240.00772 * 2 1 3 5 5 H 1.08000 * 120.00210 * 274.37777 * 4 2 1 6 6 C 1.37876 * 119.99737 * 94.37936 * 4 2 1 7 7 N 1.31521 * 120.00031 * 183.83650 * 6 4 2 8 8 Si 1.86803 * 120.00323 * 3.84070 * 6 4 2 9 9 H 1.48499 * 109.47207 * 93.66029 * 8 6 4 10 10 H 1.48495 * 109.46979 * 213.65844 * 8 6 4 11 11 H 1.48501 * 109.46908 * 333.65682 * 8 6 4 12 12 N 1.46493 * 109.47278 * 120.01016 * 2 1 3 13 13 C 1.46497 * 120.00351 * 65.26439 * 12 2 1 14 14 C 1.39701 * 119.99816 * 245.26132 * 12 2 1 15 15 C 1.38989 * 119.98336 * 174.27203 * 14 12 2 16 16 C 1.38420 * 120.20854 * 179.97438 * 15 14 12 17 17 F 1.35102 * 119.91225 * 180.02562 * 16 15 14 18 18 C 1.38262 * 120.17884 * 0.04291 * 16 15 14 19 19 C 1.39609 * 119.97039 * 359.97438 * 18 16 15 20 20 C 1.43198 * 120.10070 * 179.97438 * 19 18 16 21 21 N 5.91892 * 119.31463 * 29.37646 * 2 1 3 22 22 C 1.38638 * 119.99002 * 354.00693 * 14 12 2 23 23 H 1.09009 * 109.47030 * 294.73778 * 1 2 3 24 24 H 1.08997 * 109.47516 * 174.73674 * 1 2 3 25 25 H 1.09001 * 109.47433 * 54.72819 * 1 2 3 26 26 H 0.96992 * 120.00188 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.47104 * 89.99507 * 13 12 2 28 28 H 1.08992 * 109.47372 * 209.99912 * 13 12 2 29 29 H 1.09009 * 109.46961 * 330.00399 * 13 12 2 30 30 H 1.07999 * 119.90331 * 0.02562 * 15 14 12 31 31 H 1.08002 * 120.01182 * 180.02562 * 18 16 15 32 32 H 1.08004 * 120.08227 * 359.97438 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.1449 -1.7844 -1.2261 6 6 2.3479 0.0112 -2.3624 7 7 2.7139 -0.6141 -3.4600 8 14 2.2559 1.8768 -2.3367 9 1 3.5919 2.4337 -2.0049 10 1 1.8318 2.3698 -3.6717 11 1 1.2708 2.3097 -1.3133 12 7 2.0183 -0.6908 1.1960 13 6 1.7621 -2.1225 1.3710 14 6 2.7285 0.0158 2.1696 15 6 3.0883 -0.6095 3.3576 16 6 3.7924 0.0860 4.3253 17 9 4.1395 -0.5279 5.4777 18 6 4.1413 1.4074 4.1159 19 6 3.7834 2.0430 2.9255 20 6 4.1428 3.4116 2.7060 21 7 4.4279 4.4974 2.5317 22 6 3.0790 1.3388 1.9483 23 1 -0.3633 0.4301 0.9334 24 1 -0.3634 -1.0233 -0.0943 25 1 -0.3634 0.5934 -0.8390 26 1 2.9364 -0.1066 -4.2561 27 1 2.5784 -2.6943 0.9298 28 1 1.6910 -2.3516 2.4342 29 1 0.8260 -2.3869 0.8789 30 1 2.8184 -1.6416 3.5260 31 1 4.6911 1.9474 4.8726 32 1 2.8040 1.8242 1.0235 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227617737.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:51 Heat of formation + Delta-G solvation = 20.944395 kcal Electronic energy + Delta-G solvation = -17482.816034 eV Core-core repulsion = 14551.439505 eV Total energy + Delta-G solvation = -2931.376529 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.77163 -39.49721 -36.99727 -35.77998 -33.01335 -31.34732 -30.32993 -29.31747 -25.98431 -25.38521 -23.39841 -22.45823 -19.96635 -18.54824 -17.35402 -16.39537 -16.30135 -15.73608 -15.49939 -15.20815 -14.68250 -13.94376 -13.77359 -13.55590 -13.38670 -13.16218 -12.76909 -12.47041 -12.29575 -12.05443 -11.82398 -11.71533 -11.43602 -11.23992 -10.99435 -10.85831 -10.50564 -9.96724 -9.60183 -9.21993 -8.78422 -8.66985 -6.85480 -6.32646 -4.35560 0.88550 1.54857 2.72864 3.07907 3.10519 3.16785 3.23303 3.55054 3.97827 4.00363 4.17796 4.54776 5.01698 5.10984 5.22989 5.28188 5.51091 5.62719 5.85664 5.92501 6.09234 6.20780 6.27241 6.29459 6.32142 6.39863 6.45243 6.65035 6.86575 6.97364 7.35255 7.53993 7.81302 7.89504 8.33212 8.71109 9.27439 10.79684 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.019792 B = 0.008344 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.361479 B = 3355.030224 C = 4342.650377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.226 3.774 3 H 0.055 0.945 4 C -0.528 4.528 5 H 0.081 0.919 6 C 0.081 3.919 7 N -0.886 5.886 8 Si 0.860 3.140 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.260 1.260 12 N -0.591 5.591 13 C 0.096 3.904 14 C 0.263 3.737 15 C -0.228 4.228 16 C 0.150 3.850 17 F -0.140 7.140 18 C -0.193 4.193 19 C 0.046 3.954 20 C 0.265 3.735 21 N -0.423 5.423 22 C -0.166 4.166 23 H 0.029 0.971 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.268 0.732 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.308 -0.221 12.372 12.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.126 3.874 3 H 0.072 0.928 4 C -0.566 4.566 5 H 0.099 0.901 6 C -0.123 4.123 7 N -0.522 5.522 8 Si 0.687 3.313 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.184 1.184 12 N -0.293 5.293 13 C -0.047 4.047 14 C 0.153 3.847 15 C -0.253 4.253 16 C 0.129 3.871 17 F -0.119 7.119 18 C -0.217 4.217 19 C 0.041 3.959 20 C -0.051 4.051 21 N -0.098 5.098 22 C -0.191 4.191 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.157 0.843 31 H 0.152 0.848 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.952 1.316 11.712 11.824 hybrid contribution -0.001 0.366 -0.030 0.367 sum -0.952 1.682 11.681 11.840 Atomic orbital electron populations 1.22276 0.98173 1.01242 0.99280 1.19492 0.91054 0.93822 0.83052 0.92779 1.21122 1.44927 0.96109 0.94432 0.90086 1.24951 0.93898 0.98175 0.95319 1.69865 1.44417 1.36039 1.01911 0.87109 0.79438 0.86418 0.78367 1.19641 1.20652 1.18419 1.47506 1.54360 1.08069 1.19357 1.21550 1.01829 0.81377 0.99954 1.17425 0.89197 0.90302 0.87796 1.20688 1.08320 1.02159 0.94113 1.16959 0.97388 0.90474 0.82236 1.91483 1.90267 1.83033 1.47089 1.20503 1.08481 0.94066 0.98644 1.15289 1.00136 0.85508 0.94945 1.25650 0.93436 0.92690 0.93283 1.81202 1.08770 1.11873 1.07949 1.20828 1.03952 0.94190 1.00147 0.95172 0.92912 0.92557 0.92181 0.92880 0.92637 0.91050 0.84331 0.84843 0.84501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.15 37.16 0.34 -2.47 16 2 C 0.23 4.68 2.17 -69.08 -0.15 4.53 16 3 H 0.05 1.15 2.34 -51.93 -0.12 1.02 16 4 C -0.53 -13.17 8.77 -34.44 -0.30 -13.47 16 5 H 0.08 2.20 7.48 -52.49 -0.39 1.80 16 6 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 7 N -0.89 -25.15 13.96 55.43 0.77 -24.38 16 8 Si 0.86 19.70 27.13 -169.99 -4.61 15.09 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.26 -5.52 6.47 56.52 0.37 -5.16 16 12 N -0.59 -10.57 2.89 -173.38 -0.50 -11.07 16 13 C 0.10 1.46 9.18 59.85 0.55 2.01 16 14 C 0.26 4.31 6.53 -83.85 -0.55 3.77 16 15 C -0.23 -3.21 9.23 -39.24 -0.36 -3.57 16 16 C 0.15 2.01 7.29 -39.51 -0.29 1.72 16 17 F -0.14 -1.84 17.26 2.25 0.04 -1.80 16 18 C -0.19 -2.53 9.73 -39.06 -0.38 -2.91 16 19 C 0.05 0.67 5.73 -106.97 -0.61 0.06 16 20 C 0.26 4.15 15.33 -22.47 -0.34 3.80 16 21 N -0.42 -7.27 18.54 41.84 0.78 -6.49 16 22 C -0.17 -2.74 9.02 -38.95 -0.35 -3.09 16 23 H 0.03 0.50 8.14 -51.92 -0.42 0.07 16 24 H 0.05 0.94 7.07 -51.93 -0.37 0.57 16 25 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 26 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 28 H 0.06 0.67 5.98 -51.93 -0.31 0.36 16 29 H 0.07 1.08 6.82 -51.92 -0.35 0.72 16 30 H 0.14 1.72 6.01 -52.49 -0.32 1.40 16 31 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.14 2.44 5.73 -52.48 -0.30 2.14 16 LS Contribution 280.16 15.07 4.22 4.22 Total: -1.00 -27.16 280.16 -4.87 -32.02 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -3.02 Total: -0.02 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -2.54 Total: -7.58 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 1.05 Total: -41.94 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.61 Total: 15.09 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.16 -4.87 -32.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227617737.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.969 kcal (2) G-P(sol) polarization free energy of solvation -27.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds