Wall clock time and date at job start Mon Mar 30 2020 06:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47249 * 2 1 4 4 C 1.50706 * 109.46617 * 240.00772 * 2 1 3 5 5 H 1.08000 * 120.00210 * 274.37777 * 4 2 1 6 6 C 1.37876 * 119.99737 * 94.37936 * 4 2 1 7 7 N 1.31521 * 120.00031 * 183.83650 * 6 4 2 8 8 Si 1.86803 * 120.00323 * 3.84070 * 6 4 2 9 9 H 1.48499 * 109.47207 * 93.66029 * 8 6 4 10 10 H 1.48495 * 109.46979 * 213.65844 * 8 6 4 11 11 H 1.48501 * 109.46908 * 333.65682 * 8 6 4 12 12 N 1.46493 * 109.47278 * 120.01016 * 2 1 3 13 13 C 1.46497 * 120.00351 * 65.26439 * 12 2 1 14 14 C 1.39701 * 119.99816 * 245.26132 * 12 2 1 15 15 C 1.38989 * 119.98336 * 174.27203 * 14 12 2 16 16 C 1.38420 * 120.20854 * 179.97438 * 15 14 12 17 17 F 1.35102 * 119.91225 * 180.02562 * 16 15 14 18 18 C 1.38262 * 120.17884 * 0.04291 * 16 15 14 19 19 C 1.39609 * 119.97039 * 359.97438 * 18 16 15 20 20 C 1.43198 * 120.10070 * 179.97438 * 19 18 16 21 21 N 5.91892 * 119.31463 * 29.37646 * 2 1 3 22 22 C 1.38638 * 119.99002 * 354.00693 * 14 12 2 23 23 H 1.09009 * 109.47030 * 294.73778 * 1 2 3 24 24 H 1.08997 * 109.47516 * 174.73674 * 1 2 3 25 25 H 1.09001 * 109.47433 * 54.72819 * 1 2 3 26 26 H 0.96992 * 120.00188 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.47104 * 89.99507 * 13 12 2 28 28 H 1.08992 * 109.47372 * 209.99912 * 13 12 2 29 29 H 1.09009 * 109.46961 * 330.00399 * 13 12 2 30 30 H 1.07999 * 119.90331 * 0.02562 * 15 14 12 31 31 H 1.08002 * 120.01182 * 180.02562 * 18 16 15 32 32 H 1.08004 * 120.08227 * 359.97438 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.1449 -1.7844 -1.2261 6 6 2.3479 0.0112 -2.3624 7 7 2.7139 -0.6141 -3.4600 8 14 2.2559 1.8768 -2.3367 9 1 3.5919 2.4337 -2.0049 10 1 1.8318 2.3698 -3.6717 11 1 1.2708 2.3097 -1.3133 12 7 2.0183 -0.6908 1.1960 13 6 1.7621 -2.1225 1.3710 14 6 2.7285 0.0158 2.1696 15 6 3.0883 -0.6095 3.3576 16 6 3.7924 0.0860 4.3253 17 9 4.1395 -0.5279 5.4777 18 6 4.1413 1.4074 4.1159 19 6 3.7834 2.0430 2.9255 20 6 4.1428 3.4116 2.7060 21 7 4.4279 4.4974 2.5317 22 6 3.0790 1.3388 1.9483 23 1 -0.3633 0.4301 0.9334 24 1 -0.3634 -1.0233 -0.0943 25 1 -0.3634 0.5934 -0.8390 26 1 2.9364 -0.1066 -4.2561 27 1 2.5784 -2.6943 0.9298 28 1 1.6910 -2.3516 2.4342 29 1 0.8260 -2.3869 0.8789 30 1 2.8184 -1.6416 3.5260 31 1 4.6911 1.9474 4.8726 32 1 2.8040 1.8242 1.0235 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227617737.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:50 Heat of formation + Delta-G solvation = 6.594200 kcal Electronic energy + Delta-G solvation = -17483.438305 eV Core-core repulsion = 14551.439505 eV Total energy + Delta-G solvation = -2931.998801 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.83453 -40.73624 -38.33043 -37.11371 -34.78509 -32.86038 -31.58963 -30.59368 -27.33325 -27.11073 -24.60999 -23.79212 -21.40069 -19.87277 -19.09680 -17.64601 -17.55872 -17.02580 -16.62397 -16.49393 -16.20188 -15.27042 -15.21005 -14.86899 -14.62573 -14.58919 -14.38444 -14.06215 -13.57473 -13.36583 -13.13516 -13.04309 -12.93425 -12.65474 -12.52103 -12.32612 -11.95133 -11.81226 -11.17737 -10.75849 -10.67639 -9.82214 -8.34427 -8.16378 -6.38923 -0.29747 0.39502 1.27916 1.33164 1.38443 1.48938 1.86403 2.25296 2.26898 2.73234 2.81357 3.08590 3.40222 3.98100 4.01782 4.15613 4.30955 4.45123 4.47437 4.67278 4.80677 4.84239 4.87928 5.03318 5.08327 5.09333 5.20069 5.25166 5.47924 5.56042 5.74699 6.10987 6.30944 6.47479 6.69660 6.74897 7.28046 8.81735 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.019792 B = 0.008344 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.361479 B = 3355.030224 C = 4342.650377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.230 3.770 3 H 0.053 0.947 4 C -0.518 4.518 5 H 0.047 0.953 6 C 0.026 3.974 7 N -0.939 5.939 8 Si 0.912 3.088 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.232 1.232 12 N -0.606 5.606 13 C 0.097 3.903 14 C 0.247 3.753 15 C -0.211 4.211 16 C 0.153 3.847 17 F -0.133 7.133 18 C -0.170 4.170 19 C 0.046 3.954 20 C 0.281 3.719 21 N -0.451 5.451 22 C -0.181 4.181 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.266 0.734 27 H 0.036 0.964 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.158 0.842 31 H 0.160 0.840 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.559 0.368 15.190 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.127 3.873 3 H 0.070 0.930 4 C -0.557 4.557 5 H 0.066 0.934 6 C -0.173 4.173 7 N -0.579 5.579 8 Si 0.736 3.264 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.155 1.155 12 N -0.310 5.310 13 C -0.046 4.046 14 C 0.139 3.861 15 C -0.235 4.235 16 C 0.133 3.867 17 F -0.112 7.112 18 C -0.193 4.193 19 C 0.041 3.959 20 C -0.034 4.034 21 N -0.127 5.127 22 C -0.206 4.206 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.176 0.824 31 H 0.178 0.822 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.202 1.910 14.590 14.763 hybrid contribution 0.141 0.090 -0.743 0.761 sum -1.061 1.999 13.847 14.031 Atomic orbital electron populations 1.22162 0.96453 1.01569 1.00283 1.19260 0.92256 0.93315 0.82438 0.92960 1.21417 1.43262 0.94865 0.96158 0.93442 1.25680 0.94219 1.02340 0.95090 1.70007 1.47377 1.37680 1.02816 0.86266 0.79776 0.81533 0.78801 1.20086 1.20992 1.15539 1.47185 1.55833 1.08917 1.19095 1.21625 1.00975 0.79863 1.02111 1.17498 0.89901 0.90347 0.88389 1.20843 1.06823 1.02883 0.92994 1.16905 0.97108 0.90472 0.82264 1.91514 1.90119 1.82908 1.46621 1.20761 1.06589 0.93895 0.98083 1.15203 1.00394 0.84971 0.95295 1.25709 0.92614 0.92607 0.92451 1.81224 1.09858 1.12753 1.08846 1.20765 1.05093 0.94646 1.00129 0.92697 0.92716 0.93230 0.92442 0.94510 0.89018 0.91431 0.82421 0.82236 0.86179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.20 9.15 71.98 0.66 -4.54 16 2 C 0.23 9.30 2.17 44.25 0.10 9.40 16 3 H 0.05 2.15 2.34 -2.39 -0.01 2.15 16 4 C -0.52 -26.37 8.77 25.60 0.22 -26.15 16 5 H 0.05 2.67 7.48 -2.91 -0.02 2.65 16 6 C 0.03 1.39 5.47 84.65 0.46 1.85 16 7 N -0.94 -55.35 13.96 21.45 0.30 -55.05 16 8 Si 0.91 40.92 27.13 68.60 1.86 42.79 16 9 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.23 -9.29 6.47 99.48 0.64 -8.64 16 12 N -0.61 -20.81 2.89 -702.45 -2.03 -22.84 16 13 C 0.10 2.80 9.18 127.77 1.17 3.97 16 14 C 0.25 7.51 6.53 38.16 0.25 7.76 16 15 C -0.21 -5.18 9.23 22.49 0.21 -4.97 16 16 C 0.15 3.48 7.29 22.32 0.16 3.64 16 17 F -0.13 -2.91 17.26 44.97 0.78 -2.14 16 18 C -0.17 -3.77 9.73 22.61 0.22 -3.55 16 19 C 0.05 1.22 5.73 -21.39 -0.12 1.10 16 20 C 0.28 8.21 15.33 88.33 1.35 9.57 16 21 N -0.45 -14.79 18.54 19.00 0.35 -14.44 16 22 C -0.18 -5.62 9.02 22.68 0.20 -5.42 16 23 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 24 H 0.05 1.89 7.07 -2.39 -0.02 1.88 16 25 H 0.05 1.80 8.04 -2.39 -0.02 1.78 16 26 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 27 H 0.04 1.16 8.13 -2.39 -0.02 1.14 16 28 H 0.09 1.93 5.98 -2.39 -0.01 1.92 16 29 H 0.07 1.98 6.82 -2.38 -0.02 1.96 16 30 H 0.16 3.24 6.01 -2.91 -0.02 3.22 16 31 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.12 4.15 5.73 -2.91 -0.02 4.13 16 Total: -1.00 -59.39 280.16 7.25 -52.14 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 1.10 Total: 6.88 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 4.89 Total: -7.35 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -1.38 Total: -92.33 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.78 Total: -2.14 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.86 Total: 42.79 kcal Total: -59.39 7.25 -52.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227617737.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.735 kcal (2) G-P(sol) polarization free energy of solvation -59.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds