Wall clock time and date at job start Mon Mar 30 2020 06:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99985 * 180.27663 * 6 4 2 8 8 Si 1.86800 * 119.99777 * 0.28166 * 6 4 2 9 9 H 1.48498 * 109.47109 * 89.99834 * 8 6 4 10 10 H 1.48507 * 109.46754 * 209.99574 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99405 * 8 6 4 12 12 C 1.52996 * 109.47068 * 239.99597 * 2 1 3 13 13 C 1.50700 * 109.47144 * 65.00484 * 12 2 1 14 14 N 1.30967 * 126.43316 * 90.00078 * 13 12 2 15 15 C 1.35238 * 105.58187 * 179.97438 * 14 13 12 16 16 C 1.48318 * 126.42354 * 179.97438 * 15 14 13 17 17 C 1.46751 * 127.12176 * 179.71246 * 16 15 14 18 18 C 1.34344 * 106.00191 * 179.83268 * 17 16 15 19 19 O 1.34176 * 109.00335 * 0.43112 * 18 17 16 20 20 C 1.33970 * 110.77451 * 359.71047 * 19 18 17 21 21 N 1.30833 * 107.15701 * 359.97438 * 15 14 13 22 22 O 1.21292 * 110.08063 * 359.74375 * 21 15 14 23 23 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 25 25 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 26 26 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 27 27 H 1.09009 * 109.46866 * 185.00388 * 12 2 1 28 28 H 1.09003 * 109.47260 * 304.99704 * 12 2 1 29 29 H 1.07995 * 127.00433 * 359.97438 * 17 16 15 30 30 H 1.08000 * 125.49693 * 180.14669 * 18 17 16 31 31 H 1.08000 * 125.76871 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 2.1467 -0.8526 3.5566 8 14 0.6299 1.2829 2.6540 9 1 -0.7974 0.8766 2.7062 10 1 0.9857 2.0024 3.9035 11 1 0.8478 2.1772 1.4887 12 6 2.0399 -0.7213 -1.2492 13 6 1.6414 0.0570 -2.4766 14 7 2.3360 1.0034 -3.0570 15 6 1.5907 1.4068 -4.1109 16 6 1.9457 2.4659 -5.0866 17 6 1.1522 2.9116 -6.2379 18 6 1.8665 3.8863 -6.8249 19 8 3.0101 4.0600 -6.1450 20 6 3.0756 3.2204 -5.1030 21 7 0.4977 0.6877 -4.1084 22 8 0.5154 -0.0936 -3.1809 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.9153 -0.5190 4.4376 27 1 3.1263 -0.7996 -1.2054 28 1 1.6054 -1.7199 -1.2950 29 1 0.1891 2.5346 -6.5485 30 1 1.5702 4.4377 -7.7050 31 1 3.8892 3.1542 -4.3959 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235096599.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:35 Heat of formation + Delta-G solvation = 78.702166 kcal Electronic energy + Delta-G solvation = -17214.013707 eV Core-core repulsion = 14272.768953 eV Total energy + Delta-G solvation = -2941.244754 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.19546 -42.58945 -36.07612 -35.54175 -33.28468 -32.17659 -31.02462 -29.85069 -27.25162 -25.22314 -24.58731 -22.89942 -21.28680 -20.79153 -19.74449 -18.14216 -17.75667 -16.90503 -16.53290 -16.16395 -15.23545 -14.91174 -14.19716 -13.83419 -13.50030 -13.07362 -12.92358 -12.59516 -12.40698 -12.16144 -11.96869 -11.77726 -11.24451 -10.83217 -10.75160 -10.41676 -10.18849 -9.95179 -9.55340 -9.33002 -9.17027 -8.69286 -8.63232 -6.16109 -4.17539 1.09089 1.66754 1.99004 2.79151 3.06111 3.21281 3.23870 3.35586 3.36802 3.70636 4.10895 4.34580 4.59505 4.97995 5.09358 5.16805 5.35731 5.64153 5.78049 5.81802 5.86490 5.95203 6.07307 6.19680 6.27418 6.38557 6.54369 6.67021 6.84559 6.96462 7.31185 7.60734 8.37049 8.44419 8.85022 9.45057 10.96421 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.036778 B = 0.004975 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.149116 B = 5627.309546 C = 5826.072937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.015 3.985 3 H 0.036 0.964 4 C -0.518 4.518 5 H 0.080 0.920 6 C 0.076 3.924 7 N -0.896 5.896 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.267 1.267 12 C -0.016 4.016 13 C 0.217 3.783 14 N -0.492 5.492 15 C 0.235 3.765 16 C -0.122 4.122 17 C -0.185 4.185 18 C -0.039 4.039 19 O -0.177 6.177 20 C 0.028 3.972 21 N -0.389 5.389 22 O 0.074 5.926 23 H 0.059 0.941 24 H 0.043 0.957 25 H 0.024 0.976 26 H 0.266 0.734 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.156 0.844 30 H 0.209 0.791 31 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.707 6.692 -17.523 18.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.005 4.005 3 H 0.054 0.946 4 C -0.556 4.556 5 H 0.098 0.902 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.193 1.193 12 C -0.056 4.056 13 C -0.003 4.003 14 N -0.225 5.225 15 C -0.035 4.035 16 C -0.125 4.125 17 C -0.205 4.205 18 C -0.105 4.105 19 O -0.072 6.072 20 C -0.043 4.043 21 N -0.099 5.099 22 O 0.016 5.984 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.126 0.874 28 H 0.116 0.884 29 H 0.174 0.826 30 H 0.225 0.775 31 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -0.785 7.232 -18.047 19.458 hybrid contribution -0.934 0.556 0.436 1.171 sum -1.719 7.788 -17.611 19.333 Atomic orbital electron populations 1.22267 0.98870 1.01273 0.98648 1.19208 0.92154 0.97023 0.92087 0.94621 1.20836 1.32807 1.13825 0.88093 0.90180 1.24935 0.95487 0.96507 0.95774 1.69873 1.45155 1.40252 0.98016 0.86865 0.80661 0.83785 0.77033 1.20478 1.22365 1.19255 1.20635 1.03128 0.97293 0.84495 1.29495 0.81508 0.93333 0.95930 1.72019 1.29824 1.13134 1.07542 1.22858 0.88354 0.97730 0.94585 1.18614 0.97396 0.99270 0.97209 1.22769 1.01979 0.99687 0.96036 1.23902 0.85503 1.01412 0.99660 1.83907 1.37769 1.51106 1.34395 1.24259 0.99477 0.90367 0.90192 1.74850 1.21444 1.06060 1.07508 1.85286 1.38857 1.45041 1.29252 0.92161 0.93889 0.95672 0.92438 0.87363 0.88395 0.82613 0.77492 0.76574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.49 37.16 0.32 -2.91 16 2 C 0.02 0.34 1.88 -91.77 -0.17 0.16 16 3 H 0.04 0.84 7.19 -51.93 -0.37 0.46 16 4 C -0.52 -13.54 9.14 -34.44 -0.31 -13.85 16 5 H 0.08 2.20 7.99 -52.49 -0.42 1.79 16 6 C 0.08 2.09 5.45 -17.82 -0.10 1.99 16 7 N -0.90 -26.36 13.96 55.43 0.77 -25.59 16 8 Si 0.89 21.55 24.37 -169.99 -4.14 17.41 16 9 H -0.28 -6.60 6.88 56.52 0.39 -6.21 16 10 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.27 -6.37 6.52 56.52 0.37 -6.00 16 12 C -0.02 -0.30 5.26 -27.88 -0.15 -0.44 16 13 C 0.22 3.90 6.89 -12.99 -0.09 3.81 16 14 N -0.49 -9.01 11.58 -9.87 -0.11 -9.12 16 15 C 0.23 4.11 8.08 -156.09 -1.26 2.84 16 16 C -0.12 -1.77 6.33 -103.16 -0.65 -2.42 16 17 C -0.18 -2.17 11.15 -37.52 -0.42 -2.59 16 18 C -0.04 -0.35 12.04 29.36 0.35 0.00 16 19 O -0.18 -1.91 10.54 6.94 0.07 -1.84 16 20 C 0.03 0.34 12.07 29.89 0.36 0.70 16 21 N -0.39 -7.03 12.21 30.98 0.38 -6.65 16 22 O 0.07 1.32 10.75 18.05 0.19 1.52 16 23 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.04 0.96 3.29 -51.93 -0.17 0.79 16 25 H 0.02 0.48 6.94 -51.93 -0.36 0.12 16 26 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.11 1.86 8.14 -51.92 -0.42 1.44 16 28 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 29 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.21 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.22 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 273.01 15.07 4.11 4.11 Total: -1.00 -30.92 273.01 -3.89 -34.81 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -3.04 Total: -1.96 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -2.12 Total: -12.69 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 1.04 Total: -41.36 kcal Atomic # 8 Polarization: -0.59 SS G_CDS: 0.27 Total: -0.32 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.14 Total: 17.41 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.92 -3.89 -34.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235096599.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.514 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds