Wall clock time and date at job start Mon Mar 30 2020 06:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99985 * 180.27663 * 6 4 2 8 8 Si 1.86800 * 119.99777 * 0.28166 * 6 4 2 9 9 H 1.48498 * 109.47109 * 89.99834 * 8 6 4 10 10 H 1.48507 * 109.46754 * 209.99574 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99405 * 8 6 4 12 12 C 1.52996 * 109.47068 * 239.99597 * 2 1 3 13 13 C 1.50700 * 109.47144 * 65.00484 * 12 2 1 14 14 N 1.30967 * 126.43316 * 90.00078 * 13 12 2 15 15 C 1.35238 * 105.58187 * 179.97438 * 14 13 12 16 16 C 1.48318 * 126.42354 * 179.97438 * 15 14 13 17 17 C 1.46751 * 127.12176 * 179.71246 * 16 15 14 18 18 C 1.34344 * 106.00191 * 179.83268 * 17 16 15 19 19 O 1.34176 * 109.00335 * 0.43112 * 18 17 16 20 20 C 1.33970 * 110.77451 * 359.71047 * 19 18 17 21 21 N 1.30833 * 107.15701 * 359.97438 * 15 14 13 22 22 O 1.21292 * 110.08063 * 359.74375 * 21 15 14 23 23 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 25 25 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 26 26 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 27 27 H 1.09009 * 109.46866 * 185.00388 * 12 2 1 28 28 H 1.09003 * 109.47260 * 304.99704 * 12 2 1 29 29 H 1.07995 * 127.00433 * 359.97438 * 17 16 15 30 30 H 1.08000 * 125.49693 * 180.14669 * 18 17 16 31 31 H 1.08000 * 125.76871 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 2.1467 -0.8526 3.5566 8 14 0.6299 1.2829 2.6540 9 1 -0.7974 0.8766 2.7062 10 1 0.9857 2.0024 3.9035 11 1 0.8478 2.1772 1.4887 12 6 2.0399 -0.7213 -1.2492 13 6 1.6414 0.0570 -2.4766 14 7 2.3360 1.0034 -3.0570 15 6 1.5907 1.4068 -4.1109 16 6 1.9457 2.4659 -5.0866 17 6 1.1522 2.9116 -6.2379 18 6 1.8665 3.8863 -6.8249 19 8 3.0101 4.0600 -6.1450 20 6 3.0756 3.2204 -5.1030 21 7 0.4977 0.6877 -4.1084 22 8 0.5154 -0.0936 -3.1809 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.9153 -0.5190 4.4376 27 1 3.1263 -0.7996 -1.2054 28 1 1.6054 -1.7199 -1.2950 29 1 0.1891 2.5346 -6.5485 30 1 1.5702 4.4377 -7.7050 31 1 3.8892 3.1542 -4.3959 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235096599.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:34 Heat of formation + Delta-G solvation = 57.211897 kcal Electronic energy + Delta-G solvation = -17214.945595 eV Core-core repulsion = 14272.768953 eV Total energy + Delta-G solvation = -2942.176642 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.55663 -43.44994 -37.67645 -36.94523 -34.69108 -33.72791 -32.52516 -30.74396 -28.79552 -27.15121 -25.85495 -24.21838 -22.29429 -22.00744 -21.23221 -19.33975 -19.07421 -18.67008 -17.91079 -17.02598 -16.80449 -16.17739 -15.66803 -15.44616 -14.81526 -14.60978 -14.20582 -13.92383 -13.65033 -13.59458 -13.30984 -13.23321 -12.99727 -12.49778 -12.34471 -12.12848 -11.82708 -11.58053 -11.18488 -11.12717 -10.72031 -10.44773 -9.65904 -8.28938 -6.32516 -0.12574 0.52564 1.03841 1.30853 1.37516 1.45351 1.80599 1.88992 1.97340 2.32337 2.55195 2.90125 3.07417 3.74508 3.95119 4.05009 4.16282 4.31030 4.41913 4.54471 4.66114 4.72155 4.80744 4.86388 4.89764 5.00830 5.07148 5.27664 5.29012 5.57237 5.63054 5.98669 6.27097 6.74653 7.08801 7.33126 8.86868 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.036778 B = 0.004975 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.149116 B = 5627.309546 C = 5826.072937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.016 3.984 3 H 0.023 0.977 4 C -0.512 4.512 5 H 0.057 0.943 6 C 0.023 3.977 7 N -0.942 5.942 8 Si 0.938 3.062 9 H -0.267 1.267 10 H -0.300 1.300 11 H -0.260 1.260 12 C -0.007 4.007 13 C 0.215 3.785 14 N -0.503 5.503 15 C 0.236 3.764 16 C -0.165 4.165 17 C -0.210 4.210 18 C -0.012 4.012 19 O -0.175 6.175 20 C 0.040 3.960 21 N -0.403 5.403 22 O 0.070 5.930 23 H 0.071 0.929 24 H 0.030 0.970 25 H 0.040 0.960 26 H 0.266 0.734 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.160 0.840 30 H 0.256 0.744 31 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.187 8.196 -19.617 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.004 4.004 3 H 0.041 0.959 4 C -0.550 4.550 5 H 0.075 0.925 6 C -0.175 4.175 7 N -0.582 5.582 8 Si 0.767 3.233 9 H -0.193 1.193 10 H -0.227 1.227 11 H -0.184 1.184 12 C -0.046 4.046 13 C -0.004 4.004 14 N -0.238 5.238 15 C -0.034 4.034 16 C -0.169 4.169 17 C -0.230 4.230 18 C -0.077 4.077 19 O -0.069 6.069 20 C -0.032 4.032 21 N -0.115 5.115 22 O 0.014 5.986 23 H 0.090 0.910 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.132 0.868 28 H 0.136 0.864 29 H 0.178 0.822 30 H 0.271 0.729 31 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.277 8.729 -20.160 22.006 hybrid contribution -0.713 0.103 0.970 1.208 sum -1.990 8.833 -19.190 21.218 Atomic orbital electron populations 1.22191 0.97667 1.02138 0.98761 1.19086 0.93065 0.96127 0.92159 0.95890 1.21136 1.31370 1.12846 0.89628 0.92511 1.25649 0.96974 0.99167 0.95703 1.69996 1.47337 1.42246 0.98595 0.86009 0.79633 0.80794 0.76891 1.19313 1.22741 1.18427 1.20450 1.03562 0.97723 0.82890 1.29340 0.81740 0.93333 0.95992 1.72019 1.30309 1.13336 1.08087 1.23359 0.87748 0.97788 0.94501 1.18940 0.99465 1.00092 0.98374 1.22941 1.02778 1.01179 0.96060 1.24744 0.83720 0.99824 0.99445 1.83954 1.38442 1.50520 1.34021 1.24513 0.98939 0.89460 0.90255 1.74830 1.22049 1.06693 1.07887 1.85265 1.38721 1.45227 1.29355 0.91021 0.95118 0.94061 0.92452 0.86791 0.86362 0.82209 0.72851 0.75213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.04 8.49 71.98 0.61 -5.43 16 2 C 0.02 0.67 1.88 -11.54 -0.02 0.65 16 3 H 0.02 1.05 7.19 -2.39 -0.02 1.04 16 4 C -0.51 -26.79 9.14 25.60 0.23 -26.56 16 5 H 0.06 3.17 7.99 -2.91 -0.02 3.15 16 6 C 0.02 1.29 5.45 84.66 0.46 1.75 16 7 N -0.94 -56.37 13.96 21.45 0.30 -56.07 16 8 Si 0.94 44.17 24.37 68.60 1.67 45.84 16 9 H -0.27 -12.01 6.88 99.48 0.68 -11.32 16 10 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 11 H -0.26 -11.76 6.52 99.48 0.65 -11.12 16 12 C -0.01 -0.26 5.26 29.85 0.16 -0.10 16 13 C 0.22 7.50 6.89 88.36 0.61 8.11 16 14 N -0.50 -17.95 11.58 -302.41 -3.50 -21.45 16 15 C 0.24 8.03 8.08 137.24 1.11 9.13 16 16 C -0.17 -4.56 6.33 -18.92 -0.12 -4.68 16 17 C -0.21 -4.49 11.15 23.61 0.26 -4.23 16 18 C -0.01 -0.17 12.04 66.93 0.81 0.63 16 19 O -0.17 -3.25 10.54 1.91 0.02 -3.23 16 20 C 0.04 0.89 12.07 67.27 0.81 1.70 16 21 N -0.40 -14.22 12.21 -59.02 -0.72 -14.94 16 22 O 0.07 2.44 10.75 74.66 0.80 3.24 16 23 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 24 H 0.03 1.30 3.29 -2.39 -0.01 1.29 16 25 H 0.04 1.51 6.94 -2.39 -0.02 1.49 16 26 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 27 H 0.11 3.82 8.14 -2.38 -0.02 3.80 16 28 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 29 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 30 H 0.26 1.08 8.06 -2.91 -0.02 1.05 16 31 H 0.23 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -66.43 273.01 4.57 -61.86 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: 1.08 Total: 3.78 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 4.92 Total: -19.03 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -3.92 Total: -92.46 kcal Atomic # 8 Polarization: -0.81 SS G_CDS: 0.82 Total: 0.01 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.67 Total: 45.84 kcal Total: -66.43 4.57 -61.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235096599.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.076 kcal (2) G-P(sol) polarization free energy of solvation -66.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds