Wall clock time and date at job start Mon Mar 30 2020 06:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47438 * 2 1 4 4 C 1.53000 * 109.47365 * 120.00206 * 2 1 3 5 5 C 1.50702 * 109.46914 * 294.99925 * 4 2 1 6 6 H 1.07996 * 120.00221 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99927 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99923 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99808 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46995 * 89.99790 * 9 7 5 11 11 H 1.48498 * 109.46686 * 209.99470 * 9 7 5 12 12 H 1.48494 * 109.47307 * 329.99748 * 9 7 5 13 13 C 1.50701 * 109.46955 * 240.00071 * 2 1 3 14 14 N 1.30927 * 126.40282 * 119.98572 * 13 2 1 15 15 C 1.35397 * 105.57951 * 180.02562 * 14 13 2 16 16 C 1.47728 * 126.45065 * 179.97438 * 15 14 13 17 17 C 1.35990 * 125.93713 * 180.02562 * 16 15 14 18 18 C 1.40820 * 106.74091 * 179.97438 * 17 16 15 19 19 C 1.34825 * 107.03731 * 0.02562 * 18 17 16 20 20 O 1.34199 * 108.67749 * 359.75282 * 19 18 17 21 21 N 1.31035 * 107.09979 * 359.97438 * 15 14 13 22 22 O 1.21293 * 110.04621 * 359.97438 * 21 15 14 23 23 H 1.08997 * 109.46897 * 300.00192 * 1 2 3 24 24 H 1.09003 * 109.46926 * 60.00046 * 1 2 3 25 25 H 1.09002 * 109.46719 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46756 * 54.99418 * 4 2 1 27 27 H 1.08998 * 109.47175 * 174.99891 * 4 2 1 28 28 H 0.96997 * 119.99723 * 179.97438 * 8 7 5 29 29 H 1.07996 * 126.62787 * 0.02562 * 17 16 15 30 30 H 1.07994 * 126.48396 * 179.97438 * 18 17 16 31 31 H 1.07997 * 125.65729 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0801 0.9741 2.3757 7 6 1.9925 -0.4023 3.7283 8 7 1.6450 0.2772 4.7994 9 14 2.9629 -1.9889 3.9027 10 1 4.4164 -1.6853 3.8790 11 1 2.6147 -2.6431 5.1896 12 1 2.6290 -2.8995 2.7783 13 6 2.0323 -0.7104 -1.2305 14 7 2.7879 -0.1985 -2.1692 15 6 2.9824 -1.1960 -3.0639 16 6 3.7723 -1.1160 -4.3096 17 6 3.9605 -2.1252 -5.2015 18 6 4.7715 -1.6105 -6.2313 19 6 5.0365 -0.3256 -5.9206 20 8 4.4273 -0.0291 -4.7621 21 7 2.3381 -2.2457 -2.6166 22 8 1.7904 -1.9814 -1.5671 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6054 -1.7198 1.2951 27 1 3.1264 -0.7995 1.2055 28 1 1.8917 -0.0462 5.6800 29 1 3.5639 -3.1274 -5.1337 30 1 5.1166 -2.1442 -7.1044 31 1 5.6356 0.3537 -6.5088 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235102429.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:45 Heat of formation + Delta-G solvation = 76.308766 kcal Electronic energy + Delta-G solvation = -17133.170992 eV Core-core repulsion = 14191.822452 eV Total energy + Delta-G solvation = -2941.348540 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.35879 -42.76009 -36.16124 -35.49237 -33.41176 -32.61158 -31.39251 -29.54106 -27.77003 -24.73790 -24.49785 -22.89379 -21.66493 -21.29600 -19.78865 -17.98614 -17.89801 -17.13759 -16.63646 -16.21713 -15.31046 -14.82915 -14.21450 -13.75484 -13.23029 -13.13535 -12.91680 -12.75816 -12.41016 -12.26686 -11.88429 -11.57665 -11.18121 -11.05335 -10.83805 -10.58640 -10.25471 -10.19981 -9.89398 -9.71932 -9.33199 -8.63546 -8.57988 -6.14064 -4.14399 0.77481 1.60257 2.16673 2.35361 2.83461 3.07463 3.26787 3.34951 3.38240 3.65048 4.29262 4.37552 4.69734 4.77178 4.95144 5.19013 5.45062 5.53820 5.59600 5.61953 5.67096 5.76227 6.04347 6.08292 6.16868 6.40248 6.46639 6.77799 6.79385 6.95768 7.12580 7.60051 8.25541 8.37857 8.87710 9.46594 10.98271 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.037846 B = 0.004789 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.656999 B = 5845.846636 C = 6024.023224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.008 3.992 3 H 0.115 0.885 4 C -0.009 4.009 5 C -0.522 4.522 6 H 0.081 0.919 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.264 1.264 13 C 0.224 3.776 14 N -0.483 5.483 15 C 0.232 3.768 16 C 0.061 3.939 17 C -0.155 4.155 18 C -0.217 4.217 19 C -0.018 4.018 20 O -0.153 6.153 21 N -0.370 5.370 22 O 0.087 5.913 23 H 0.092 0.908 24 H 0.044 0.956 25 H 0.059 0.941 26 H 0.030 0.970 27 H 0.018 0.982 28 H 0.265 0.735 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.468 -3.175 -18.870 19.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.013 4.013 3 H 0.132 0.868 4 C -0.047 4.047 5 C -0.559 4.559 6 H 0.099 0.901 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.188 1.188 13 C 0.004 3.996 14 N -0.216 5.216 15 C -0.038 4.038 16 C 0.009 3.991 17 C -0.177 4.177 18 C -0.236 4.236 19 C -0.088 4.088 20 O -0.047 6.047 21 N -0.079 5.079 22 O 0.026 5.974 23 H 0.111 0.889 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.036 0.964 28 H 0.075 0.925 29 H 0.175 0.825 30 H 0.174 0.826 31 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 3.701 -3.322 -19.130 19.766 hybrid contribution 0.669 -0.927 0.171 1.156 sum 4.370 -4.249 -18.959 19.915 Atomic orbital electron populations 1.21815 0.92302 1.02755 1.02665 1.20226 0.97064 0.98952 0.85031 0.86752 1.19745 0.96426 0.96804 0.91732 1.20903 1.36662 1.09902 0.88467 0.90132 1.24930 0.95308 0.96829 0.95807 1.69883 1.46374 1.39037 0.98147 0.86882 0.80802 0.84407 0.77917 1.20209 1.21117 1.18832 1.29676 0.91130 0.81341 0.97422 1.72225 1.17883 1.28447 1.03006 1.22199 0.99597 0.86867 0.95100 1.18076 1.01049 0.86507 0.93428 1.21817 1.01796 1.00050 0.94057 1.21795 1.04182 0.95533 1.02124 1.24329 0.99925 0.97865 0.86638 1.84128 1.51458 1.35585 1.33513 1.74952 1.12672 1.21831 0.98449 1.85298 1.53911 1.30196 1.28003 0.88944 0.93711 0.92226 0.95187 0.96358 0.92489 0.82470 0.82555 0.77184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.99 37.16 0.33 -1.92 16 2 C 0.01 0.14 2.81 -91.77 -0.26 -0.11 16 3 H 0.11 2.11 8.14 -51.93 -0.42 1.69 16 4 C -0.01 -0.20 3.50 -27.88 -0.10 -0.29 16 5 C -0.52 -13.63 8.96 -34.44 -0.31 -13.94 16 6 H 0.08 2.21 7.30 -52.49 -0.38 1.82 16 7 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 8 N -0.90 -26.31 13.96 55.43 0.77 -25.54 16 9 Si 0.87 20.92 27.47 -169.99 -4.67 16.25 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 13 C 0.22 4.15 7.00 -12.97 -0.09 4.05 16 14 N -0.48 -9.25 11.58 -9.88 -0.11 -9.36 16 15 C 0.23 4.16 8.06 -156.04 -1.26 2.90 16 16 C 0.06 0.94 7.26 -36.51 -0.26 0.68 16 17 C -0.16 -1.93 10.82 -39.41 -0.43 -2.36 16 18 C -0.22 -2.09 10.89 -39.82 -0.43 -2.52 16 19 C -0.02 -0.17 12.08 29.52 0.36 0.19 16 20 O -0.15 -2.18 10.67 4.83 0.05 -2.13 16 21 N -0.37 -6.65 12.18 30.99 0.38 -6.27 16 22 O 0.09 1.59 11.29 17.99 0.20 1.79 16 23 H 0.09 1.61 6.95 -51.93 -0.36 1.25 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 27 H 0.02 0.42 7.57 -51.93 -0.39 0.02 16 28 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.16 1.77 8.06 -52.49 -0.42 1.34 16 30 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.21 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 279.65 15.07 4.21 4.21 Total: -1.00 -30.52 279.65 -4.92 -35.44 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -3.21 Total: -2.99 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -2.54 Total: -11.40 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 1.04 Total: -41.18 kcal Atomic # 8 Polarization: -0.59 SS G_CDS: 0.25 Total: -0.34 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.52 -4.92 -35.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235102429.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.746 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds