Wall clock time and date at job start Mon Mar 30 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47438 * 2 1 4 4 C 1.53000 * 109.47365 * 120.00206 * 2 1 3 5 5 C 1.50702 * 109.46914 * 294.99925 * 4 2 1 6 6 H 1.07996 * 120.00221 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99927 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99923 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99808 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46995 * 89.99790 * 9 7 5 11 11 H 1.48498 * 109.46686 * 209.99470 * 9 7 5 12 12 H 1.48494 * 109.47307 * 329.99748 * 9 7 5 13 13 C 1.50701 * 109.46955 * 240.00071 * 2 1 3 14 14 N 1.30927 * 126.40282 * 119.98572 * 13 2 1 15 15 C 1.35397 * 105.57951 * 180.02562 * 14 13 2 16 16 C 1.47728 * 126.45065 * 179.97438 * 15 14 13 17 17 C 1.35990 * 125.93713 * 180.02562 * 16 15 14 18 18 C 1.40820 * 106.74091 * 179.97438 * 17 16 15 19 19 C 1.34825 * 107.03731 * 0.02562 * 18 17 16 20 20 O 1.34199 * 108.67749 * 359.75282 * 19 18 17 21 21 N 1.31035 * 107.09979 * 359.97438 * 15 14 13 22 22 O 1.21293 * 110.04621 * 359.97438 * 21 15 14 23 23 H 1.08997 * 109.46897 * 300.00192 * 1 2 3 24 24 H 1.09003 * 109.46926 * 60.00046 * 1 2 3 25 25 H 1.09002 * 109.46719 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46756 * 54.99418 * 4 2 1 27 27 H 1.08998 * 109.47175 * 174.99891 * 4 2 1 28 28 H 0.96997 * 119.99723 * 179.97438 * 8 7 5 29 29 H 1.07996 * 126.62787 * 0.02562 * 17 16 15 30 30 H 1.07994 * 126.48396 * 179.97438 * 18 17 16 31 31 H 1.07997 * 125.65729 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0801 0.9741 2.3757 7 6 1.9925 -0.4023 3.7283 8 7 1.6450 0.2772 4.7994 9 14 2.9629 -1.9889 3.9027 10 1 4.4164 -1.6853 3.8790 11 1 2.6147 -2.6431 5.1896 12 1 2.6290 -2.8995 2.7783 13 6 2.0323 -0.7104 -1.2305 14 7 2.7879 -0.1985 -2.1692 15 6 2.9824 -1.1960 -3.0639 16 6 3.7723 -1.1160 -4.3096 17 6 3.9605 -2.1252 -5.2015 18 6 4.7715 -1.6105 -6.2313 19 6 5.0365 -0.3256 -5.9206 20 8 4.4273 -0.0291 -4.7621 21 7 2.3381 -2.2457 -2.6166 22 8 1.7904 -1.9814 -1.5671 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6054 -1.7198 1.2951 27 1 3.1264 -0.7995 1.2055 28 1 1.8917 -0.0462 5.6800 29 1 3.5639 -3.1274 -5.1337 30 1 5.1166 -2.1442 -7.1044 31 1 5.6356 0.3537 -6.5088 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235102429.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:44 Heat of formation + Delta-G solvation = 55.830579 kcal Electronic energy + Delta-G solvation = -17134.058992 eV Core-core repulsion = 14191.822452 eV Total energy + Delta-G solvation = -2942.236541 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.72777 -43.66556 -37.70377 -36.91351 -34.68206 -34.19634 -32.83462 -30.58927 -29.53875 -26.25364 -25.71364 -24.43305 -22.72947 -22.50032 -21.07328 -19.32147 -19.23281 -18.93056 -17.91939 -17.18339 -16.51403 -16.33859 -16.05701 -15.34056 -14.69905 -14.13387 -14.03574 -13.98258 -13.78044 -13.60024 -13.30540 -13.12257 -12.95652 -12.61817 -12.33804 -12.10414 -11.99528 -11.70745 -11.39245 -11.25841 -11.00959 -10.74537 -9.55325 -8.26205 -6.29605 -0.40741 0.31634 1.25748 1.37003 1.37836 1.40236 1.49359 1.65302 1.70408 2.37131 2.42335 3.09248 3.16755 3.67183 3.87972 4.01067 4.06356 4.16425 4.28050 4.50193 4.61484 4.74321 4.85905 4.88908 4.94412 5.01079 5.15686 5.31771 5.39552 5.45257 5.60635 5.91348 6.27051 6.76996 6.88125 7.34167 8.89101 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.037846 B = 0.004789 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.656999 B = 5845.846636 C = 6024.023224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.015 3.985 3 H 0.113 0.887 4 C -0.006 4.006 5 C -0.517 4.517 6 H 0.057 0.943 7 C 0.017 3.983 8 N -0.942 5.942 9 Si 0.930 3.070 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.249 1.249 13 C 0.224 3.776 14 N -0.502 5.502 15 C 0.234 3.766 16 C 0.004 3.996 17 C -0.139 4.139 18 C -0.220 4.220 19 C 0.001 3.999 20 O -0.178 6.178 21 N -0.379 5.379 22 O 0.080 5.920 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.035 0.965 27 H 0.014 0.986 28 H 0.266 0.734 29 H 0.165 0.835 30 H 0.193 0.807 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.652 -4.222 -21.549 22.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.005 4.005 3 H 0.131 0.869 4 C -0.044 4.044 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.181 4.181 8 N -0.583 5.583 9 Si 0.755 3.245 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.172 1.172 13 C 0.005 3.995 14 N -0.235 5.235 15 C -0.035 4.035 16 C -0.047 4.047 17 C -0.161 4.161 18 C -0.238 4.238 19 C -0.067 4.067 20 O -0.073 6.073 21 N -0.090 5.090 22 O 0.022 5.978 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.183 0.817 30 H 0.211 0.789 31 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 4.865 -4.385 -21.809 22.771 hybrid contribution 0.366 -0.532 0.812 1.037 sum 5.232 -4.917 -20.997 22.191 Atomic orbital electron populations 1.21765 0.90605 1.03458 1.03142 1.20023 0.98433 0.98314 0.83742 0.86939 1.19633 0.96168 0.96812 0.91785 1.21176 1.35211 1.09197 0.89919 0.92479 1.25729 0.96608 1.00087 0.95662 1.70011 1.48441 1.41097 0.98744 0.85956 0.79315 0.80899 0.78359 1.19950 1.20821 1.17215 1.29442 0.91210 0.81563 0.97315 1.72209 1.18289 1.29354 1.03668 1.22669 0.99068 0.86185 0.95615 1.18137 1.04203 0.88187 0.94165 1.22171 1.00532 0.99682 0.93728 1.22229 1.03451 0.95664 1.02465 1.25420 0.97775 0.98804 0.84743 1.84111 1.52123 1.35792 1.35314 1.74907 1.13533 1.21976 0.98579 1.85273 1.54259 1.29922 1.28360 0.90315 0.91331 0.91426 0.94633 0.96773 0.92446 0.81742 0.78949 0.72600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 8.99 71.98 0.65 -3.60 16 2 C 0.02 0.57 2.81 -11.54 -0.03 0.53 16 3 H 0.11 4.19 8.14 -2.39 -0.02 4.17 16 4 C -0.01 -0.25 3.50 29.85 0.10 -0.15 16 5 C -0.52 -27.39 8.96 25.60 0.23 -27.16 16 6 H 0.06 3.22 7.30 -2.91 -0.02 3.20 16 7 C 0.02 0.95 5.47 84.66 0.46 1.41 16 8 N -0.94 -56.50 13.96 21.45 0.30 -56.20 16 9 Si 0.93 42.95 27.47 68.60 1.88 44.84 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 13 C 0.22 8.23 7.00 88.35 0.62 8.85 16 14 N -0.50 -19.16 11.58 -302.26 -3.50 -22.66 16 15 C 0.23 8.32 8.06 136.95 1.10 9.42 16 16 C 0.00 0.12 7.26 24.26 0.18 0.30 16 17 C -0.14 -3.16 10.82 22.38 0.24 -2.92 16 18 C -0.22 -3.36 10.89 22.12 0.24 -3.12 16 19 C 0.00 0.02 12.08 67.04 0.81 0.83 16 20 O -0.18 -4.78 10.67 -5.64 -0.06 -4.84 16 21 N -0.38 -13.46 12.18 -58.77 -0.72 -14.17 16 22 O 0.08 2.88 11.29 74.43 0.84 3.72 16 23 H 0.08 2.76 6.95 -2.39 -0.02 2.74 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 27 H 0.01 0.63 7.57 -2.39 -0.02 0.61 16 28 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 30 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 31 H 0.26 1.16 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -67.04 279.65 4.44 -62.60 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: 1.09 Total: 2.32 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 4.60 Total: -15.60 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -3.92 Total: -93.03 kcal Atomic # 8 Polarization: -1.90 SS G_CDS: 0.78 Total: -1.12 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.88 Total: 44.84 kcal Total: -67.04 4.44 -62.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235102429.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.426 kcal (2) G-P(sol) polarization free energy of solvation -67.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds