Wall clock time and date at job start Mon Mar 30 2020 06:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46849 * 2 1 4 4 C 1.50695 * 109.47427 * 239.99808 * 2 1 3 5 5 H 1.07997 * 120.00519 * 240.00123 * 4 2 1 6 6 C 1.37888 * 119.99951 * 59.99760 * 4 2 1 7 7 N 1.31512 * 119.99548 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99928 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47285 * 60.00103 * 8 6 4 10 10 H 1.48503 * 109.46885 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47231 * 299.99869 * 8 6 4 12 12 C 1.52997 * 109.47060 * 119.99880 * 2 1 3 13 13 C 1.50706 * 109.47238 * 294.99946 * 12 2 1 14 14 N 1.30929 * 126.39992 * 90.00061 * 13 12 2 15 15 C 1.35391 * 105.57330 * 179.97438 * 14 13 12 16 16 C 1.47740 * 126.44477 * 180.02562 * 15 14 13 17 17 C 1.35986 * 125.93644 * 179.97438 * 16 15 14 18 18 C 1.40812 * 106.73919 * 179.97438 * 17 16 15 19 19 C 1.34814 * 107.04329 * 359.97438 * 18 17 16 20 20 O 1.34202 * 108.67551 * 359.77555 * 19 18 17 21 21 N 1.31030 * 107.10465 * 0.02562 * 15 14 13 22 22 O 1.21284 * 110.04336 * 359.74705 * 21 15 14 23 23 H 1.09000 * 109.47227 * 299.99845 * 1 2 3 24 24 H 1.09004 * 109.47014 * 60.00590 * 1 2 3 25 25 H 1.09006 * 109.46717 * 180.02562 * 1 2 3 26 26 H 0.97002 * 119.99896 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.46832 * 175.00260 * 12 2 1 28 28 H 1.09000 * 109.47611 * 55.00557 * 12 2 1 29 29 H 1.08003 * 126.62765 * 359.96663 * 17 16 15 30 30 H 1.08002 * 126.48003 * 179.97438 * 18 17 16 31 31 H 1.08000 * 125.66139 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8260 -2.5202 -4.0076 10 1 1.8270 -0.4200 -5.2204 11 1 3.8064 -1.1209 -4.0081 12 6 2.0400 -0.7212 1.2492 13 6 1.6413 0.0571 2.4766 14 7 0.5353 -0.0865 3.1624 15 6 0.6121 0.8156 4.1692 16 6 -0.3989 1.0439 5.2220 17 6 -0.3107 1.9532 6.2293 18 6 -1.4877 1.8287 6.9922 19 6 -2.2295 0.8598 6.4190 20 8 -1.5712 0.3920 5.3472 21 7 1.7518 1.4479 4.0339 22 8 2.3529 1.0200 3.0713 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 0.7089 1.1613 -3.4844 27 1 3.1263 -0.7994 1.2056 28 1 1.6055 -1.7198 1.2952 29 1 0.5045 2.6383 6.4094 30 1 -1.7471 2.4010 7.8706 31 1 -3.1952 0.5198 6.7626 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235405885.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:32 Heat of formation + Delta-G solvation = 76.925240 kcal Electronic energy + Delta-G solvation = -17205.854987 eV Core-core repulsion = 14264.533180 eV Total energy + Delta-G solvation = -2941.321807 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.20661 -42.66242 -35.97466 -35.17201 -33.36432 -32.63043 -30.88256 -29.50178 -26.66426 -25.20899 -24.33883 -22.88932 -21.55065 -20.85869 -19.70608 -18.06453 -17.77658 -16.67324 -16.33590 -16.10150 -15.20936 -14.69174 -14.29818 -13.38782 -13.05819 -13.02731 -12.82962 -12.57545 -12.36727 -11.83849 -11.58954 -11.25139 -10.96516 -10.74278 -10.70768 -10.29093 -10.18960 -10.08770 -9.91376 -9.37101 -8.96984 -8.47215 -8.41241 -6.06462 -4.15362 0.89371 1.75303 2.27346 2.46532 2.97224 3.22039 3.29486 3.34719 3.36816 3.80886 4.37198 4.44811 4.78745 4.86658 5.12004 5.25036 5.59375 5.65996 5.72926 5.92609 5.95771 6.15206 6.22749 6.32065 6.50645 6.89472 6.90278 7.11760 7.22821 7.61925 7.82795 8.03956 8.28256 8.41162 8.86760 9.50308 10.99616 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.049196 B = 0.004507 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.011065 B = 6211.527414 C = 6467.588499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.050 3.950 3 H 0.033 0.967 4 C -0.519 4.519 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C -0.028 4.028 13 C 0.226 3.774 14 N -0.477 5.477 15 C 0.231 3.769 16 C 0.064 3.936 17 C -0.158 4.158 18 C -0.218 4.218 19 C -0.019 4.019 20 O -0.153 6.153 21 N -0.373 5.373 22 O 0.080 5.920 23 H 0.009 0.991 24 H 0.083 0.917 25 H 0.030 0.970 26 H 0.262 0.738 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.856 0.279 15.129 15.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.030 3.970 3 H 0.051 0.949 4 C -0.557 4.557 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.067 4.067 13 C 0.007 3.993 14 N -0.210 5.210 15 C -0.038 4.038 16 C 0.013 3.987 17 C -0.180 4.180 18 C -0.237 4.237 19 C -0.089 4.089 20 O -0.046 6.046 21 N -0.083 5.083 22 O 0.019 5.981 23 H 0.028 0.972 24 H 0.102 0.898 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.175 0.825 30 H 0.174 0.826 31 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.173 0.605 15.410 15.745 hybrid contribution 0.222 -0.276 -0.801 0.876 sum -2.950 0.329 14.608 14.907 Atomic orbital electron populations 1.21840 0.97845 0.99609 1.00324 1.18746 0.93503 0.96001 0.88749 0.94917 1.20977 1.32014 1.12811 0.89941 0.92101 1.24951 0.94841 0.94901 0.99099 1.69888 1.36140 1.22689 1.23722 0.86585 0.79204 0.79731 0.82058 1.20165 1.21307 1.20137 1.20938 1.02569 0.97504 0.85699 1.29588 0.85210 0.88165 0.96350 1.72244 1.20795 1.22444 1.05546 1.22208 0.92485 0.94018 0.95136 1.18109 0.86110 0.97978 0.96550 1.21798 1.00432 1.00563 0.95196 1.21777 0.95631 1.02479 1.03782 1.24307 0.99021 0.97934 0.87663 1.84135 1.26412 1.52549 1.41515 1.74910 1.07641 1.20567 1.05136 1.85289 1.41537 1.41623 1.29623 0.97167 0.89833 0.95049 0.92758 0.88762 0.88037 0.82527 0.82636 0.77270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.78 37.16 0.33 -3.03 16 2 C 0.05 1.18 2.29 -91.78 -0.21 0.97 16 3 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.52 -13.34 8.56 -34.44 -0.29 -13.64 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.74 11.32 55.43 0.63 -24.11 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.41 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 C -0.03 -0.53 5.26 -27.88 -0.15 -0.68 16 13 C 0.23 4.34 6.95 -12.97 -0.09 4.25 16 14 N -0.48 -9.59 10.90 -9.89 -0.11 -9.70 16 15 C 0.23 4.34 8.06 -156.05 -1.26 3.09 16 16 C 0.06 1.05 7.26 -36.51 -0.26 0.79 16 17 C -0.16 -2.09 10.82 -39.42 -0.43 -2.52 16 18 C -0.22 -2.26 10.88 -39.82 -0.43 -2.69 16 19 C -0.02 -0.20 12.08 29.52 0.36 0.15 16 20 O -0.15 -2.32 10.67 4.82 0.05 -2.27 16 21 N -0.37 -6.94 12.18 30.98 0.38 -6.56 16 22 O 0.08 1.49 11.29 18.01 0.20 1.70 16 23 H 0.01 0.22 6.84 -51.93 -0.36 -0.13 16 24 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 28 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 29 H 0.16 1.87 8.06 -52.48 -0.42 1.45 16 30 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.21 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 279.17 15.07 4.21 4.21 Total: -1.00 -29.67 279.17 -5.37 -35.04 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -3.17 Total: -2.00 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -2.54 Total: -11.71 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.90 Total: -40.38 kcal Atomic # 8 Polarization: -0.83 SS G_CDS: 0.25 Total: -0.57 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.67 -5.37 -35.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235405885.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.966 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds