Wall clock time and date at job start Mon Mar 30 2020 06:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46849 * 2 1 4 4 C 1.50695 * 109.47427 * 239.99808 * 2 1 3 5 5 H 1.07997 * 120.00519 * 240.00123 * 4 2 1 6 6 C 1.37888 * 119.99951 * 59.99760 * 4 2 1 7 7 N 1.31512 * 119.99548 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99928 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47285 * 60.00103 * 8 6 4 10 10 H 1.48503 * 109.46885 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47231 * 299.99869 * 8 6 4 12 12 C 1.52997 * 109.47060 * 119.99880 * 2 1 3 13 13 C 1.50706 * 109.47238 * 294.99946 * 12 2 1 14 14 N 1.30929 * 126.39992 * 90.00061 * 13 12 2 15 15 C 1.35391 * 105.57330 * 179.97438 * 14 13 12 16 16 C 1.47740 * 126.44477 * 180.02562 * 15 14 13 17 17 C 1.35986 * 125.93644 * 179.97438 * 16 15 14 18 18 C 1.40812 * 106.73919 * 179.97438 * 17 16 15 19 19 C 1.34814 * 107.04329 * 359.97438 * 18 17 16 20 20 O 1.34202 * 108.67551 * 359.77555 * 19 18 17 21 21 N 1.31030 * 107.10465 * 0.02562 * 15 14 13 22 22 O 1.21284 * 110.04336 * 359.74705 * 21 15 14 23 23 H 1.09000 * 109.47227 * 299.99845 * 1 2 3 24 24 H 1.09004 * 109.47014 * 60.00590 * 1 2 3 25 25 H 1.09006 * 109.46717 * 180.02562 * 1 2 3 26 26 H 0.97002 * 119.99896 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.46832 * 175.00260 * 12 2 1 28 28 H 1.09000 * 109.47611 * 55.00557 * 12 2 1 29 29 H 1.08003 * 126.62765 * 359.96663 * 17 16 15 30 30 H 1.08002 * 126.48003 * 179.97438 * 18 17 16 31 31 H 1.08000 * 125.66139 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8260 -2.5202 -4.0076 10 1 1.8270 -0.4200 -5.2204 11 1 3.8064 -1.1209 -4.0081 12 6 2.0400 -0.7212 1.2492 13 6 1.6413 0.0571 2.4766 14 7 0.5353 -0.0865 3.1624 15 6 0.6121 0.8156 4.1692 16 6 -0.3989 1.0439 5.2220 17 6 -0.3107 1.9532 6.2293 18 6 -1.4877 1.8287 6.9922 19 6 -2.2295 0.8598 6.4190 20 8 -1.5712 0.3920 5.3472 21 7 1.7518 1.4479 4.0339 22 8 2.3529 1.0200 3.0713 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 0.7089 1.1613 -3.4844 27 1 3.1263 -0.7994 1.2056 28 1 1.6055 -1.7198 1.2952 29 1 0.5045 2.6383 6.4094 30 1 -1.7471 2.4010 7.8706 31 1 -3.1952 0.5198 6.7626 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235405885.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:32 Heat of formation + Delta-G solvation = 58.025251 kcal Electronic energy + Delta-G solvation = -17206.674553 eV Core-core repulsion = 14264.533180 eV Total energy + Delta-G solvation = -2942.141372 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.64337 -43.64802 -37.62599 -36.74379 -34.67148 -34.03004 -32.57327 -30.62209 -28.36336 -27.22211 -25.62759 -24.29224 -22.53864 -22.30740 -21.21105 -19.38360 -19.14788 -18.32531 -17.88221 -17.16337 -16.57771 -16.30433 -15.96532 -14.93348 -14.62177 -14.08897 -13.96153 -13.93739 -13.57359 -13.50919 -13.16993 -13.01504 -12.76604 -12.54430 -12.26958 -12.12194 -11.95286 -11.73956 -11.14951 -10.96819 -10.90344 -10.43523 -9.52704 -8.07808 -6.22867 -0.35279 0.40073 1.29424 1.41981 1.50002 1.51118 1.58209 1.73407 1.76738 2.46469 2.56723 3.22265 3.23230 3.79510 3.89862 4.03862 4.34011 4.42750 4.49263 4.59858 4.79291 4.81448 4.87652 4.93776 5.02313 5.13982 5.32021 5.41250 5.61042 5.83518 5.93543 6.03212 6.28343 6.87802 6.96550 7.46655 8.97999 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.049196 B = 0.004507 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.011065 B = 6211.527414 C = 6467.588499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.048 3.952 3 H 0.003 0.997 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.269 1.269 10 H -0.292 1.292 11 H -0.267 1.267 12 C -0.016 4.016 13 C 0.224 3.776 14 N -0.499 5.499 15 C 0.231 3.769 16 C 0.006 3.994 17 C -0.141 4.141 18 C -0.219 4.219 19 C -0.001 4.001 20 O -0.179 6.179 21 N -0.382 5.382 22 O 0.074 5.926 23 H 0.010 0.990 24 H 0.054 0.946 25 H 0.034 0.966 26 H 0.260 0.740 27 H 0.119 0.881 28 H 0.114 0.886 29 H 0.165 0.835 30 H 0.194 0.806 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.247 -0.388 16.627 16.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.028 3.972 3 H 0.022 0.978 4 C -0.567 4.567 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.786 3.214 9 H -0.194 1.194 10 H -0.218 1.218 11 H -0.192 1.192 12 C -0.055 4.055 13 C 0.005 3.995 14 N -0.233 5.233 15 C -0.038 4.038 16 C -0.045 4.045 17 C -0.164 4.164 18 C -0.237 4.237 19 C -0.070 4.070 20 O -0.074 6.074 21 N -0.094 5.094 22 O 0.017 5.983 23 H 0.029 0.971 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.137 0.863 28 H 0.132 0.868 29 H 0.182 0.818 30 H 0.211 0.789 31 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -3.529 -0.070 16.908 17.272 hybrid contribution 0.219 -0.010 -1.103 1.125 sum -3.311 -0.079 15.805 16.148 Atomic orbital electron populations 1.21664 0.98505 0.99238 0.98856 1.18633 0.92926 0.94891 0.90761 0.97848 1.21411 1.31656 1.13046 0.90602 0.90739 1.25789 0.95108 0.95573 1.02262 1.70044 1.37601 1.24307 1.24107 0.85562 0.78971 0.78651 0.78180 1.19370 1.21767 1.19150 1.20747 1.04077 0.97167 0.83511 1.29522 0.85281 0.88265 0.96442 1.72221 1.21195 1.23455 1.06383 1.22691 0.92931 0.93061 0.95156 1.18187 0.87227 1.01041 0.98059 1.22159 1.01372 0.98801 0.94033 1.22219 0.94147 1.02795 1.04575 1.25409 0.99716 0.96501 0.85360 1.84115 1.26434 1.53401 1.43461 1.74861 1.08022 1.21056 1.05444 1.85260 1.41650 1.41588 1.29849 0.97104 0.92688 0.94706 0.93060 0.86259 0.86811 0.81767 0.78892 0.72641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.19 8.78 71.98 0.63 -5.55 16 2 C 0.05 2.28 2.29 -11.54 -0.03 2.26 16 3 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 4 C -0.53 -27.01 8.56 25.60 0.22 -26.79 16 5 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 6 C 0.01 0.61 5.30 84.66 0.45 1.06 16 7 N -0.92 -52.50 11.32 21.45 0.24 -52.26 16 8 Si 0.96 41.70 29.54 68.60 2.03 43.73 16 9 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 10 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 12 C -0.02 -0.61 5.26 29.85 0.16 -0.45 16 13 C 0.22 8.66 6.95 88.35 0.61 9.28 16 14 N -0.50 -20.30 10.90 -302.31 -3.29 -23.60 16 15 C 0.23 8.80 8.06 136.96 1.10 9.90 16 16 C 0.01 0.19 7.26 24.26 0.18 0.36 16 17 C -0.14 -3.53 10.82 22.38 0.24 -3.29 16 18 C -0.22 -3.78 10.88 22.11 0.24 -3.54 16 19 C 0.00 -0.02 12.08 67.03 0.81 0.79 16 20 O -0.18 -5.26 10.67 -5.66 -0.06 -5.32 16 21 N -0.38 -14.44 12.18 -58.83 -0.72 -15.15 16 22 O 0.07 2.82 11.29 74.51 0.84 3.67 16 23 H 0.01 0.49 6.84 -2.39 -0.02 0.47 16 24 H 0.05 3.03 6.07 -2.39 -0.01 3.02 16 25 H 0.03 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 27 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 28 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 29 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 30 H 0.19 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.26 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -65.56 279.17 4.80 -60.75 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 1.15 Total: 4.17 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 4.62 Total: -15.98 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -3.77 Total: -91.01 kcal Atomic # 8 Polarization: -2.43 SS G_CDS: 0.78 Total: -1.65 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -65.56 4.80 -60.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235405885.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.777 kcal (2) G-P(sol) polarization free energy of solvation -65.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds