Wall clock time and date at job start Mon Mar 30 2020 06:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47286 * 2 1 4 4 C 1.50697 * 109.46953 * 239.99567 * 2 1 3 5 5 H 1.08006 * 119.99751 * 275.01240 * 4 2 1 6 6 C 1.37874 * 119.99895 * 95.01439 * 4 2 1 7 7 N 1.31519 * 119.99583 * 184.88014 * 6 4 2 8 8 Si 1.86792 * 120.00237 * 4.87591 * 6 4 2 9 9 H 1.48500 * 109.47176 * 84.76232 * 8 6 4 10 10 H 1.48496 * 109.47312 * 204.76225 * 8 6 4 11 11 H 1.48497 * 109.47212 * 324.76379 * 8 6 4 12 12 C 1.53007 * 109.47078 * 119.99360 * 2 1 3 13 13 C 1.50701 * 109.47008 * 294.99980 * 12 2 1 14 14 N 1.30975 * 126.43017 * 89.98635 * 13 12 2 15 15 C 1.35239 * 105.57985 * 180.02562 * 14 13 12 16 16 C 1.48312 * 126.42310 * 180.02562 * 15 14 13 17 17 C 1.46748 * 127.12611 * 179.68175 * 16 15 14 18 18 C 1.34339 * 106.00722 * 179.83318 * 17 16 15 19 19 O 1.34167 * 109.00164 * 0.43580 * 18 17 16 20 20 C 1.33974 * 110.77642 * 359.70727 * 19 18 17 21 21 N 1.30835 * 107.15680 * 359.97438 * 15 14 13 22 22 O 1.21294 * 110.08493 * 359.97438 * 21 15 14 23 23 H 1.08999 * 109.47103 * 55.28186 * 1 2 3 24 24 H 1.08998 * 109.47217 * 175.28571 * 1 2 3 25 25 H 1.09001 * 109.47070 * 295.28588 * 1 2 3 26 26 H 0.97003 * 120.00113 * 180.02562 * 7 6 4 27 27 H 1.08995 * 109.46917 * 174.99607 * 12 2 1 28 28 H 1.09000 * 109.46830 * 54.99942 * 12 2 1 29 29 H 1.07999 * 126.99793 * 359.96027 * 17 16 15 30 30 H 1.08001 * 125.49801 * 180.10842 * 18 17 16 31 31 H 1.08006 * 125.76673 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1352 -1.7856 -1.2289 6 6 2.3605 0.0120 -2.3579 7 7 2.7068 -0.6134 -3.4618 8 14 2.3131 1.8788 -2.3176 9 1 3.5976 2.3951 -1.7803 10 1 2.1075 2.3986 -3.6934 11 1 1.1966 2.3270 -1.4472 12 6 2.0400 -0.7211 1.2494 13 6 1.6413 0.0573 2.4766 14 7 0.5350 -0.0856 3.1630 15 6 0.6118 0.8165 4.1676 16 6 -0.4034 1.0463 5.2241 17 6 -0.3333 2.0152 6.3241 18 6 -1.4726 1.8680 7.0206 19 8 -2.2104 0.9023 6.4522 20 6 -1.5883 0.3993 5.3775 21 7 1.7499 1.4476 4.0336 22 8 2.3508 1.0226 3.0694 23 1 -0.3633 0.5853 -0.8447 24 1 -0.3633 -1.0242 -0.0845 25 1 -0.3633 0.4390 0.9292 26 1 2.9380 -0.1052 -4.2551 27 1 3.1263 -0.7994 1.2057 28 1 1.6054 -1.7197 1.2954 29 1 0.4697 2.7073 6.5303 30 1 -1.7475 2.4320 7.8996 31 1 -1.9653 -0.3873 4.7405 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235406100.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:37 Heat of formation + Delta-G solvation = 72.311847 kcal Electronic energy + Delta-G solvation = -17212.768919 eV Core-core repulsion = 14271.247059 eV Total energy + Delta-G solvation = -2941.521859 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.16570 -42.58681 -36.09630 -35.38998 -33.21574 -32.15493 -31.02128 -29.85091 -27.06873 -25.27213 -24.58223 -22.82734 -21.25639 -20.81503 -19.56818 -18.07877 -17.70845 -17.11746 -16.59111 -16.16041 -15.22854 -14.51092 -14.35234 -13.79584 -13.19079 -13.03425 -12.82848 -12.60926 -12.37133 -12.32405 -11.88460 -11.64032 -11.05231 -10.77544 -10.71983 -10.61995 -10.16235 -9.81930 -9.76521 -9.36670 -9.16220 -8.69657 -8.61088 -6.17125 -4.18334 1.10404 1.67938 2.00433 2.79386 3.07707 3.23741 3.25755 3.33879 3.36399 3.72443 4.12785 4.35127 4.60061 4.98988 5.10235 5.16056 5.37569 5.65829 5.81572 5.82491 5.93584 6.03649 6.08297 6.26963 6.33561 6.50380 6.68269 6.79630 6.84899 7.09646 7.32118 7.62503 8.38017 8.46779 8.86045 9.44746 10.95439 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.042086 B = 0.004886 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.142253 B = 5729.521204 C = 5809.694150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.016 3.984 3 H 0.035 0.965 4 C -0.515 4.515 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.895 5.895 8 Si 0.873 3.127 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.266 1.266 12 C -0.022 4.022 13 C 0.216 3.784 14 N -0.490 5.490 15 C 0.234 3.766 16 C -0.120 4.120 17 C -0.185 4.185 18 C -0.039 4.039 19 O -0.177 6.177 20 C 0.028 3.972 21 N -0.389 5.389 22 O 0.071 5.929 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.025 0.975 26 H 0.266 0.734 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.156 0.844 30 H 0.208 0.792 31 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.273 3.489 17.540 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.004 4.004 3 H 0.054 0.946 4 C -0.553 4.553 5 H 0.097 0.903 6 C -0.126 4.126 7 N -0.532 5.532 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.191 1.191 12 C -0.062 4.062 13 C -0.003 4.003 14 N -0.223 5.223 15 C -0.036 4.036 16 C -0.124 4.124 17 C -0.205 4.205 18 C -0.105 4.105 19 O -0.072 6.072 20 C -0.044 4.044 21 N -0.100 5.100 22 O 0.014 5.986 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.174 0.826 30 H 0.225 0.775 31 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -6.589 3.879 18.075 19.626 hybrid contribution 0.341 1.132 -0.349 1.232 sum -6.248 5.010 17.726 19.452 Atomic orbital electron populations 1.22040 0.98147 1.00952 0.98682 1.19194 0.93203 0.96147 0.91874 0.94647 1.20815 1.44302 0.95541 0.94601 0.90282 1.24999 0.94170 0.98226 0.95219 1.69886 1.45620 1.35962 1.01701 0.86923 0.79300 0.86459 0.77322 1.19839 1.21393 1.19058 1.20861 1.03182 0.97415 0.84700 1.29601 0.85543 0.88613 0.96584 1.72042 1.21244 1.22950 1.06093 1.22867 0.92682 0.92705 0.95341 1.18612 0.94503 1.02585 0.96671 1.22774 1.00067 1.01910 0.95745 1.23895 0.91796 0.93933 1.00862 1.83904 1.44570 1.43092 1.35643 1.24245 0.91872 0.99404 0.88849 1.74855 1.08692 1.21492 1.04932 1.85276 1.41965 1.41497 1.29904 0.93795 0.93032 0.95556 0.92423 0.88179 0.87791 0.82631 0.77508 0.76610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.06 37.16 0.34 -2.60 16 2 C 0.02 0.35 1.95 -91.77 -0.18 0.17 16 3 H 0.04 0.80 5.30 -51.93 -0.28 0.53 16 4 C -0.51 -13.35 8.86 -34.44 -0.31 -13.66 16 5 H 0.08 2.19 8.06 -52.48 -0.42 1.76 16 6 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -26.13 13.96 55.43 0.77 -25.36 16 8 Si 0.87 20.87 26.99 -169.99 -4.59 16.28 16 9 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.21 6.82 56.52 0.39 -5.83 16 12 C -0.02 -0.40 5.30 -27.88 -0.15 -0.55 16 13 C 0.22 3.90 6.96 -12.98 -0.09 3.81 16 14 N -0.49 -8.80 10.75 -9.86 -0.11 -8.90 16 15 C 0.23 4.07 8.07 -156.09 -1.26 2.81 16 16 C -0.12 -1.74 6.33 -103.16 -0.65 -2.39 16 17 C -0.18 -2.18 11.15 -37.52 -0.42 -2.59 16 18 C -0.04 -0.35 12.04 29.36 0.35 0.00 16 19 O -0.18 -1.90 10.54 6.95 0.07 -1.83 16 20 C 0.03 0.33 12.07 29.89 0.36 0.69 16 21 N -0.39 -7.13 12.21 30.98 0.38 -6.75 16 22 O 0.07 1.31 11.29 18.05 0.20 1.51 16 23 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.03 0.51 6.60 -51.93 -0.34 0.17 16 26 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 28 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 29 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 30 H 0.21 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.22 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 279.05 15.07 4.21 4.21 Total: -1.00 -30.46 279.05 -4.31 -34.77 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -3.15 Total: -1.63 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -2.10 Total: -12.31 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 1.05 Total: -41.01 kcal Atomic # 8 Polarization: -0.59 SS G_CDS: 0.28 Total: -0.31 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.59 Total: 16.28 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.46 -4.31 -34.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235406100.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.086 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds