Wall clock time and date at job start Mon Mar 30 2020 06:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47286 * 2 1 4 4 C 1.50697 * 109.46953 * 239.99567 * 2 1 3 5 5 H 1.08006 * 119.99751 * 275.01240 * 4 2 1 6 6 C 1.37874 * 119.99895 * 95.01439 * 4 2 1 7 7 N 1.31519 * 119.99583 * 184.88014 * 6 4 2 8 8 Si 1.86792 * 120.00237 * 4.87591 * 6 4 2 9 9 H 1.48500 * 109.47176 * 84.76232 * 8 6 4 10 10 H 1.48496 * 109.47312 * 204.76225 * 8 6 4 11 11 H 1.48497 * 109.47212 * 324.76379 * 8 6 4 12 12 C 1.53007 * 109.47078 * 119.99360 * 2 1 3 13 13 C 1.50701 * 109.47008 * 294.99980 * 12 2 1 14 14 N 1.30975 * 126.43017 * 89.98635 * 13 12 2 15 15 C 1.35239 * 105.57985 * 180.02562 * 14 13 12 16 16 C 1.48312 * 126.42310 * 180.02562 * 15 14 13 17 17 C 1.46748 * 127.12611 * 179.68175 * 16 15 14 18 18 C 1.34339 * 106.00722 * 179.83318 * 17 16 15 19 19 O 1.34167 * 109.00164 * 0.43580 * 18 17 16 20 20 C 1.33974 * 110.77642 * 359.70727 * 19 18 17 21 21 N 1.30835 * 107.15680 * 359.97438 * 15 14 13 22 22 O 1.21294 * 110.08493 * 359.97438 * 21 15 14 23 23 H 1.08999 * 109.47103 * 55.28186 * 1 2 3 24 24 H 1.08998 * 109.47217 * 175.28571 * 1 2 3 25 25 H 1.09001 * 109.47070 * 295.28588 * 1 2 3 26 26 H 0.97003 * 120.00113 * 180.02562 * 7 6 4 27 27 H 1.08995 * 109.46917 * 174.99607 * 12 2 1 28 28 H 1.09000 * 109.46830 * 54.99942 * 12 2 1 29 29 H 1.07999 * 126.99793 * 359.96027 * 17 16 15 30 30 H 1.08001 * 125.49801 * 180.10842 * 18 17 16 31 31 H 1.08006 * 125.76673 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1352 -1.7856 -1.2289 6 6 2.3605 0.0120 -2.3579 7 7 2.7068 -0.6134 -3.4618 8 14 2.3131 1.8788 -2.3176 9 1 3.5976 2.3951 -1.7803 10 1 2.1075 2.3986 -3.6934 11 1 1.1966 2.3270 -1.4472 12 6 2.0400 -0.7211 1.2494 13 6 1.6413 0.0573 2.4766 14 7 0.5350 -0.0856 3.1630 15 6 0.6118 0.8165 4.1676 16 6 -0.4034 1.0463 5.2241 17 6 -0.3333 2.0152 6.3241 18 6 -1.4726 1.8680 7.0206 19 8 -2.2104 0.9023 6.4522 20 6 -1.5883 0.3993 5.3775 21 7 1.7499 1.4476 4.0336 22 8 2.3508 1.0226 3.0694 23 1 -0.3633 0.5853 -0.8447 24 1 -0.3633 -1.0242 -0.0845 25 1 -0.3633 0.4390 0.9292 26 1 2.9380 -0.1052 -4.2551 27 1 3.1263 -0.7994 1.2057 28 1 1.6054 -1.7197 1.2954 29 1 0.4697 2.7073 6.5303 30 1 -1.7475 2.4320 7.8996 31 1 -1.9653 -0.3873 4.7405 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235406100.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:37 Heat of formation + Delta-G solvation = 52.240162 kcal Electronic energy + Delta-G solvation = -17213.639292 eV Core-core repulsion = 14271.247059 eV Total energy + Delta-G solvation = -2942.392233 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.53492 -43.44076 -37.65930 -36.82098 -34.64505 -33.68350 -32.51951 -30.73683 -28.61629 -27.22893 -25.82044 -24.12435 -22.24989 -22.04087 -21.04715 -19.41470 -18.98982 -18.88484 -17.88984 -17.01093 -16.43043 -16.14366 -15.95589 -14.99878 -14.73761 -14.41316 -14.18679 -14.00975 -13.88143 -13.42817 -13.22336 -13.15293 -12.88676 -12.60383 -12.22213 -12.12412 -11.84365 -11.65634 -11.28856 -11.06746 -10.69775 -10.44149 -9.64991 -8.27510 -6.31216 -0.11206 0.54368 1.04769 1.36031 1.39575 1.46867 1.82758 1.90681 1.98710 2.35649 2.56189 2.92074 3.09654 3.75721 3.96817 4.06203 4.21737 4.38756 4.46040 4.60743 4.67523 4.78819 4.88266 4.94452 4.96027 5.01777 5.14990 5.29401 5.37316 5.59570 5.67523 5.99621 6.29781 6.76587 7.09989 7.34902 8.88418 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.042086 B = 0.004886 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.142253 B = 5729.521204 C = 5809.694150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.014 3.986 3 H 0.031 0.969 4 C -0.508 4.508 5 H 0.052 0.948 6 C 0.023 3.977 7 N -0.942 5.942 8 Si 0.927 3.073 9 H -0.264 1.264 10 H -0.289 1.289 11 H -0.257 1.257 12 C -0.013 4.013 13 C 0.214 3.786 14 N -0.494 5.494 15 C 0.237 3.763 16 C -0.165 4.165 17 C -0.211 4.211 18 C -0.012 4.012 19 O -0.175 6.175 20 C 0.042 3.958 21 N -0.406 5.406 22 O 0.062 5.938 23 H 0.032 0.968 24 H 0.055 0.945 25 H 0.038 0.962 26 H 0.266 0.734 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.159 0.841 30 H 0.255 0.745 31 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.593 4.494 19.779 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.006 4.006 3 H 0.049 0.951 4 C -0.546 4.546 5 H 0.071 0.929 6 C -0.175 4.175 7 N -0.582 5.582 8 Si 0.752 3.248 9 H -0.189 1.189 10 H -0.215 1.215 11 H -0.181 1.181 12 C -0.052 4.052 13 C -0.006 4.006 14 N -0.228 5.228 15 C -0.032 4.032 16 C -0.168 4.168 17 C -0.231 4.231 18 C -0.077 4.077 19 O -0.069 6.069 20 C -0.030 4.030 21 N -0.119 5.119 22 O 0.007 5.993 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.130 0.870 28 H 0.134 0.866 29 H 0.176 0.824 30 H 0.271 0.729 31 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -7.904 4.884 20.329 22.352 hybrid contribution 0.670 0.759 -0.921 1.369 sum -7.234 5.643 19.408 21.467 Atomic orbital electron populations 1.21921 0.97164 1.01164 0.98825 1.19123 0.93877 0.95734 0.91872 0.95123 1.21053 1.42925 0.94605 0.96020 0.92947 1.25724 0.94380 1.02394 0.94982 1.70012 1.47946 1.37654 1.02578 0.86039 0.79879 0.81560 0.77300 1.18876 1.21530 1.18073 1.20627 1.03990 0.97356 0.83248 1.29438 0.85752 0.88678 0.96699 1.72039 1.21089 1.23267 1.06386 1.23377 0.92798 0.91681 0.95390 1.18924 0.95205 1.05127 0.97575 1.22939 1.01654 1.02490 0.96008 1.24720 0.90113 0.92241 1.00659 1.83954 1.44523 1.43296 1.35161 1.24528 0.90880 0.98799 0.88757 1.74843 1.09423 1.22289 1.05316 1.85256 1.42242 1.41623 1.30173 0.94863 0.92622 0.94310 0.92455 0.86975 0.86614 0.82377 0.72922 0.75048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.38 9.06 71.98 0.65 -4.72 16 2 C 0.01 0.60 1.95 -11.54 -0.02 0.58 16 3 H 0.03 1.35 5.30 -2.39 -0.01 1.33 16 4 C -0.51 -26.44 8.86 25.60 0.23 -26.21 16 5 H 0.05 2.95 8.06 -2.91 -0.02 2.93 16 6 C 0.02 1.28 5.47 84.65 0.46 1.75 16 7 N -0.94 -56.07 13.96 21.45 0.30 -55.77 16 8 Si 0.93 42.80 26.99 68.60 1.85 44.65 16 9 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 10 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 11 H -0.26 -11.34 6.82 99.48 0.68 -10.66 16 12 C -0.01 -0.46 5.30 29.85 0.16 -0.30 16 13 C 0.21 7.48 6.96 88.36 0.61 8.09 16 14 N -0.49 -17.05 10.75 -302.38 -3.25 -20.30 16 15 C 0.24 8.00 8.07 137.24 1.11 9.11 16 16 C -0.16 -4.48 6.33 -18.92 -0.12 -4.60 16 17 C -0.21 -4.51 11.15 23.60 0.26 -4.25 16 18 C -0.01 -0.17 12.04 66.93 0.81 0.63 16 19 O -0.17 -3.16 10.54 1.96 0.02 -3.14 16 20 C 0.04 0.90 12.07 67.27 0.81 1.71 16 21 N -0.41 -14.57 12.21 -59.00 -0.72 -15.29 16 22 O 0.06 2.22 11.29 74.66 0.84 3.07 16 23 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.04 1.46 6.60 -2.39 -0.02 1.44 16 26 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 27 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 28 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16 29 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 30 H 0.25 1.06 8.06 -2.91 -0.02 1.04 16 31 H 0.23 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -65.50 279.05 5.13 -60.38 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: 1.12 Total: 4.64 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: 4.96 Total: -18.22 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -3.67 Total: -91.37 kcal Atomic # 8 Polarization: -0.94 SS G_CDS: 0.86 Total: -0.08 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.85 Total: 44.65 kcal Total: -65.50 5.13 -60.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235406100.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.615 kcal (2) G-P(sol) polarization free energy of solvation -65.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds