Wall clock time and date at job start Mon Mar 30 2020 06:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47505 * 2 1 4 4 C 1.52998 * 109.47206 * 239.99814 * 2 1 3 5 5 C 1.50707 * 109.46851 * 65.00287 * 4 2 1 6 6 H 1.07994 * 119.99953 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99911 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99957 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99942 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.46985 * 59.99736 * 9 7 5 11 11 H 1.48500 * 109.47165 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47075 * 299.99875 * 9 7 5 13 13 C 1.50706 * 109.46859 * 120.00432 * 2 1 3 14 14 N 1.30923 * 126.39846 * 239.99689 * 13 2 1 15 15 C 1.35392 * 105.57761 * 179.97438 * 14 13 2 16 16 C 1.47735 * 126.45211 * 179.97438 * 15 14 13 17 17 C 1.35991 * 125.93483 * 180.02562 * 16 15 14 18 18 C 1.40817 * 106.73466 * 179.97438 * 17 16 15 19 19 C 1.34822 * 107.04273 * 359.97438 * 18 17 16 20 20 O 1.34193 * 108.67845 * 359.76956 * 19 18 17 21 21 N 1.31040 * 107.09928 * 0.02562 * 15 14 13 22 22 O 1.21288 * 110.04204 * 359.72566 * 21 15 14 23 23 H 1.08995 * 109.47505 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47000 * 300.00487 * 1 2 3 25 25 H 1.09002 * 109.46917 * 59.99707 * 1 2 3 26 26 H 1.08996 * 109.47547 * 185.00123 * 4 2 1 27 27 H 1.09004 * 109.47474 * 305.00768 * 4 2 1 28 28 H 0.97002 * 119.99942 * 180.02562 * 8 7 5 29 29 H 1.07990 * 126.63215 * 359.97438 * 17 16 15 30 30 H 1.08004 * 126.48011 * 179.97438 * 18 17 16 31 31 H 1.08000 * 125.65877 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0807 0.9746 -2.3756 7 6 1.9924 -0.4022 -3.7283 8 7 2.6746 -1.5198 -3.8512 9 14 1.4989 0.5629 -5.2496 10 1 2.0920 1.9228 -5.1870 11 1 1.9927 -0.1378 -6.4622 12 1 0.0189 0.6707 -5.3090 13 6 2.0323 -0.7105 1.2305 14 7 2.7880 -0.1987 2.1691 15 6 2.9824 -1.1962 3.0637 16 6 3.7735 -1.1167 4.3089 17 6 3.9623 -2.1262 5.2003 18 6 4.7751 -1.6122 6.2288 19 6 5.0405 -0.3274 5.9180 20 8 4.4385 -0.0334 4.7553 21 7 2.3378 -2.2458 2.6165 22 8 1.7852 -1.9796 1.5701 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 3.1263 -0.7995 -1.2056 27 1 1.6053 -1.7198 -1.2952 28 1 2.9219 -1.8427 -4.7319 29 1 3.5655 -3.1283 5.1324 30 1 5.1206 -2.1461 7.1017 31 1 5.6416 0.3511 6.5050 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235416632.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:47 Heat of formation + Delta-G solvation = 52.464146 kcal Electronic energy + Delta-G solvation = -17067.616958 eV Core-core repulsion = 14125.234438 eV Total energy + Delta-G solvation = -2942.382520 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.70096 -43.66543 -37.63562 -36.88076 -34.69158 -34.17741 -32.72314 -30.56004 -29.00213 -26.33346 -25.69373 -24.66249 -22.85067 -22.50098 -21.10189 -19.27891 -19.09730 -18.59404 -17.89824 -17.18104 -16.52834 -16.30593 -16.21510 -15.11647 -14.43800 -14.17229 -13.98405 -13.88342 -13.69181 -13.59267 -13.23807 -13.01431 -12.82174 -12.62379 -12.33551 -12.29077 -12.02200 -11.77149 -11.27549 -11.17650 -10.98107 -10.53187 -9.55272 -8.16980 -6.27848 -0.39405 0.33638 1.26415 1.38080 1.48086 1.50453 1.57728 1.69540 1.71581 2.40170 2.50923 3.18210 3.19061 3.70569 3.88128 4.01521 4.12614 4.25605 4.31249 4.51525 4.66902 4.74906 4.86348 4.89247 5.04020 5.06636 5.37069 5.39868 5.40752 5.57509 5.80250 5.91491 6.16389 6.85798 6.89641 7.41519 8.95391 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.046598 B = 0.004280 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.745818 B = 6540.703220 C = 6603.576295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.008 3.992 3 H 0.115 0.885 4 C 0.035 3.965 5 C -0.530 4.530 6 H 0.080 0.920 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.291 1.291 12 H -0.261 1.261 13 C 0.226 3.774 14 N -0.505 5.505 15 C 0.233 3.767 16 C 0.004 3.996 17 C -0.139 4.139 18 C -0.219 4.219 19 C 0.002 3.998 20 O -0.178 6.178 21 N -0.382 5.382 22 O 0.075 5.925 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.087 0.913 26 H -0.013 1.013 27 H 0.009 0.991 28 H 0.263 0.737 29 H 0.164 0.836 30 H 0.194 0.806 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.071 2.227 18.008 18.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.012 4.012 3 H 0.132 0.868 4 C -0.003 4.003 5 C -0.568 4.568 6 H 0.098 0.902 7 C -0.196 4.196 8 N -0.575 5.575 9 Si 0.791 3.209 10 H -0.192 1.192 11 H -0.217 1.217 12 H -0.186 1.186 13 C 0.006 3.994 14 N -0.238 5.238 15 C -0.036 4.036 16 C -0.047 4.047 17 C -0.162 4.162 18 C -0.238 4.238 19 C -0.067 4.067 20 O -0.073 6.073 21 N -0.094 5.094 22 O 0.018 5.982 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.106 0.894 26 H 0.006 0.994 27 H 0.027 0.973 28 H 0.072 0.928 29 H 0.182 0.818 30 H 0.211 0.789 31 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 1.351 1.951 18.323 18.477 hybrid contribution 0.078 -0.089 -1.139 1.145 sum 1.429 1.862 17.185 17.344 Atomic orbital electron populations 1.21758 0.90367 1.03136 1.03454 1.20260 0.98608 0.98340 0.84036 0.86750 1.19060 0.94620 0.95646 0.90950 1.21471 1.35426 1.09097 0.90775 0.90210 1.25951 0.94944 0.95932 1.02797 1.70109 1.39860 1.22947 1.24597 0.85477 0.79231 0.78551 0.77666 1.19210 1.21684 1.18568 1.29579 0.91025 0.81512 0.97237 1.72189 1.18512 1.29435 1.03682 1.22699 0.99108 0.86149 0.95609 1.18129 1.03940 0.88408 0.94191 1.22174 1.00530 0.99581 0.93896 1.22230 1.03454 0.95614 1.02471 1.25437 0.97888 0.98808 0.84552 1.84107 1.51932 1.36142 1.35124 1.74897 1.13711 1.21983 0.98790 1.85268 1.54048 1.30235 1.28639 0.92235 0.91245 0.89404 0.99448 0.97276 0.92844 0.81839 0.78851 0.72455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 8.98 71.98 0.65 -3.58 16 2 C 0.01 0.31 2.81 -11.54 -0.03 0.28 16 3 H 0.11 4.36 8.14 -2.39 -0.02 4.34 16 4 C 0.04 1.77 4.43 29.85 0.13 1.90 16 5 C -0.53 -27.66 8.41 25.60 0.22 -27.44 16 6 H 0.08 3.80 7.06 -2.91 -0.02 3.78 16 7 C 0.00 0.10 5.46 84.66 0.46 0.56 16 8 N -0.94 -55.44 13.29 21.45 0.28 -55.16 16 9 Si 0.97 42.14 29.54 68.60 2.03 44.17 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 13 C 0.23 9.08 7.00 88.36 0.62 9.70 16 14 N -0.50 -20.70 11.58 -302.29 -3.50 -24.20 16 15 C 0.23 8.98 8.06 136.96 1.10 10.08 16 16 C 0.00 0.14 7.26 24.26 0.18 0.31 16 17 C -0.14 -3.45 10.82 22.38 0.24 -3.21 16 18 C -0.22 -3.66 10.89 22.12 0.24 -3.42 16 19 C 0.00 0.03 12.08 67.03 0.81 0.84 16 20 O -0.18 -5.05 10.67 -5.62 -0.06 -5.11 16 21 N -0.38 -14.92 12.18 -58.79 -0.72 -15.63 16 22 O 0.08 3.03 11.29 74.53 0.84 3.87 16 23 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.09 2.86 6.95 -2.39 -0.02 2.84 16 26 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 27 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 28 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 29 H 0.16 3.70 8.06 -2.92 -0.02 3.68 16 30 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 31 H 0.26 1.40 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -68.03 283.25 4.64 -63.39 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: 1.15 Total: 2.64 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 4.61 Total: -13.97 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -3.93 Total: -94.99 kcal Atomic # 8 Polarization: -2.03 SS G_CDS: 0.78 Total: -1.24 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -68.03 4.64 -63.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235416632.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.858 kcal (2) G-P(sol) polarization free energy of solvation -68.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds