Wall clock time and date at job start Mon Mar 30 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40817 * 126.63557 * 2 1 4 4 C 1.34812 * 107.04496 * 180.26070 * 3 2 1 5 5 O 1.34199 * 108.67716 * 359.78570 * 4 3 2 6 6 C 1.34726 * 109.41606 * 359.97438 * 5 4 3 7 7 C 1.47730 * 125.93915 * 179.97438 * 6 5 4 8 8 N 1.31028 * 126.45064 * 180.02562 * 7 6 5 9 9 O 1.21295 * 110.04399 * 180.02562 * 8 7 6 10 10 C 1.33682 * 110.08022 * 359.97438 * 9 8 7 11 11 C 1.50701 * 126.40250 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47212 * 270.02287 * 11 10 9 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00362 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99850 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47052 * 89.99717 * 17 15 13 19 19 H 1.48495 * 109.47307 * 209.99656 * 17 15 13 20 20 H 1.48500 * 109.47143 * 330.00164 * 17 15 13 21 21 N 1.30927 * 107.19833 * 0.26076 * 10 9 8 22 22 H 1.09001 * 109.46971 * 270.10208 * 1 2 3 23 23 H 1.08995 * 109.46478 * 30.10303 * 1 2 3 24 24 H 1.08994 * 109.46821 * 150.10394 * 1 2 3 25 25 H 1.08004 * 126.47913 * 0.05148 * 3 2 1 26 26 H 1.07997 * 125.66238 * 179.78021 * 4 3 2 27 27 H 1.09002 * 109.47060 * 30.02342 * 11 10 9 28 28 H 1.09001 * 109.47380 * 150.02429 * 11 10 9 29 29 H 1.09002 * 109.47153 * 299.99998 * 12 11 10 30 30 H 1.08998 * 109.47533 * 59.99628 * 12 11 10 31 31 H 0.96994 * 119.99814 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3473 1.1300 0.0000 4 6 3.6174 0.6780 -0.0059 5 8 3.5960 -0.6639 -0.0047 6 6 2.3184 -1.0914 0.0025 7 6 1.8758 -2.5008 0.0055 8 7 0.6370 -2.9277 0.0120 9 8 0.6152 -4.1405 0.0132 10 6 1.8623 -4.6219 0.0070 11 6 2.2598 -6.0756 0.0056 12 6 2.4012 -6.5670 1.4476 13 6 2.7981 -8.0207 1.4464 14 1 2.9361 -8.5420 0.5106 15 6 2.9861 -8.6852 2.6398 16 7 3.3329 -9.9538 2.6386 17 14 2.7495 -7.7830 4.2583 18 1 1.3360 -7.9121 4.6950 19 1 3.6417 -8.3726 5.2887 20 1 3.0827 -6.3471 4.0780 21 7 2.6739 -3.5946 0.0073 22 1 -0.3633 0.0018 1.0277 23 1 -0.3632 0.8891 -0.5154 24 1 -0.3633 -0.8909 -0.5122 25 1 2.0336 2.1635 0.0008 26 1 4.5048 1.2935 -0.0108 27 1 1.4946 -6.6610 -0.5043 28 1 3.2116 -6.1916 -0.5127 29 1 3.1664 -5.9816 1.9576 30 1 1.4495 -6.4510 1.9661 31 1 3.4648 -10.4212 3.4782 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235777545.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:42 Heat of formation + Delta-G solvation = 74.351445 kcal Electronic energy + Delta-G solvation = -17037.501153 eV Core-core repulsion = 14096.067737 eV Total energy + Delta-G solvation = -2941.433415 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.33130 -42.77207 -35.84923 -34.92409 -34.19297 -32.58992 -30.94213 -30.02133 -27.73934 -26.26471 -24.27512 -22.71054 -21.60169 -21.03729 -19.78542 -18.03854 -17.82570 -16.96023 -16.59550 -16.25531 -15.16749 -14.50600 -14.18275 -13.92957 -13.33846 -13.27048 -13.09044 -12.80300 -12.66968 -12.39545 -11.98920 -11.77418 -11.68801 -11.11570 -10.91774 -10.72603 -10.23831 -9.91329 -9.87671 -9.72572 -9.38871 -8.63930 -8.46697 -6.14639 -4.15469 0.78975 1.61718 2.16636 2.39729 2.83249 3.08541 3.26464 3.34642 3.38690 3.70349 4.31256 4.37316 4.58726 4.66886 4.99876 5.19256 5.26934 5.43702 5.49527 5.52635 5.76154 5.81606 5.85291 5.91558 5.99113 6.13618 6.31405 6.40218 6.83769 6.99283 7.12798 7.59665 8.28247 8.36867 8.87283 9.45956 10.97918 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.035209 B = 0.004704 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.050693 B = 5950.638789 C = 6125.531715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.123 4.123 3 C -0.217 4.217 4 C -0.014 4.014 5 O -0.152 6.152 6 C 0.053 3.947 7 C 0.237 3.763 8 N -0.370 5.370 9 O 0.079 5.921 10 C 0.218 3.782 11 C -0.020 4.020 12 C -0.009 4.009 13 C -0.526 4.526 14 H 0.079 0.921 15 C 0.074 3.926 16 N -0.896 5.896 17 Si 0.875 3.125 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.266 1.266 21 N -0.481 5.481 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.156 0.844 26 H 0.211 0.789 27 H 0.100 0.900 28 H 0.108 0.892 29 H 0.027 0.973 30 H 0.020 0.980 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.478 20.238 -5.620 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C -0.236 4.236 4 C -0.084 4.084 5 O -0.046 6.046 6 C 0.002 3.998 7 C -0.032 4.032 8 N -0.081 5.081 9 O 0.019 5.981 10 C -0.001 4.001 11 C -0.059 4.059 12 C -0.047 4.047 13 C -0.564 4.564 14 H 0.097 0.903 15 C -0.129 4.129 16 N -0.534 5.534 17 Si 0.702 3.298 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.190 1.190 21 N -0.214 5.214 22 H 0.091 0.909 23 H 0.088 0.912 24 H 0.097 0.903 25 H 0.174 0.826 26 H 0.228 0.772 27 H 0.119 0.881 28 H 0.126 0.874 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.463 20.595 -5.503 21.597 hybrid contribution -0.015 0.450 0.997 1.094 sum -3.478 21.044 -4.506 21.801 Atomic orbital electron populations 1.20325 0.88347 1.03266 1.02756 1.20482 0.97515 0.90937 1.03785 1.21656 0.92285 0.99877 1.09768 1.24283 1.00054 0.80187 1.03862 1.84125 1.27154 1.22607 1.70696 1.17901 0.81900 0.88216 1.11796 1.22171 0.85904 0.92022 1.03129 1.74920 1.19450 0.91791 1.21900 1.85303 1.32628 1.14379 1.65752 1.29655 0.78457 1.00342 0.91647 1.20620 1.03355 0.78750 1.03207 1.19641 0.97550 0.98061 0.89453 1.20914 1.47813 0.92651 0.95004 0.90294 1.24934 0.94205 0.94662 0.99070 1.69886 1.47052 1.09290 1.27204 0.86844 0.78516 0.80656 0.83749 1.20031 1.21094 1.19044 1.72225 1.30944 0.96580 1.21613 0.90911 0.91195 0.90310 0.82631 0.77202 0.88132 0.87359 0.95513 0.96155 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 9.94 36.01 0.36 -0.65 16 2 C -0.12 -1.60 6.20 -104.45 -0.65 -2.25 16 3 C -0.22 -2.21 10.84 -39.82 -0.43 -2.64 16 4 C -0.01 -0.14 12.08 29.52 0.36 0.21 16 5 O -0.15 -2.25 10.67 4.82 0.05 -2.20 16 6 C 0.05 0.85 7.26 -36.51 -0.26 0.59 16 7 C 0.24 4.26 8.02 -156.04 -1.25 3.01 16 8 N -0.37 -6.43 10.29 30.99 0.32 -6.11 16 9 O 0.08 1.38 11.29 18.00 0.20 1.58 16 10 C 0.22 3.95 7.74 -12.97 -0.10 3.85 16 11 C -0.02 -0.37 5.78 -27.88 -0.16 -0.53 16 12 C -0.01 -0.19 4.02 -27.89 -0.11 -0.30 16 13 C -0.53 -14.09 9.66 -34.44 -0.33 -14.42 16 14 H 0.08 2.21 7.99 -52.49 -0.42 1.80 16 15 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -26.67 13.96 55.43 0.77 -25.90 16 17 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 21 N -0.48 -9.29 11.58 -9.88 -0.11 -9.40 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 0.98 6.59 -51.93 -0.34 0.64 16 25 H 0.16 1.09 8.06 -52.48 -0.42 0.67 16 26 H 0.21 1.13 8.06 -52.49 -0.42 0.71 16 27 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 28 H 0.11 1.89 8.14 -51.93 -0.42 1.46 16 29 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 30 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 31 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 279.37 15.07 4.21 4.21 Total: -1.00 -31.45 279.37 -5.14 -36.59 By element: Atomic # 1 Polarization: -0.96 SS G_CDS: -3.23 Total: -4.19 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -2.68 Total: -11.16 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.98 Total: -41.40 kcal Atomic # 8 Polarization: -0.87 SS G_CDS: 0.25 Total: -0.62 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.45 -5.14 -36.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235777545.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.940 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds