Wall clock time and date at job start Mon Mar 30 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40817 * 126.63557 * 2 1 4 4 C 1.34812 * 107.04496 * 180.26070 * 3 2 1 5 5 O 1.34199 * 108.67716 * 359.78570 * 4 3 2 6 6 C 1.34726 * 109.41606 * 359.97438 * 5 4 3 7 7 C 1.47730 * 125.93915 * 179.97438 * 6 5 4 8 8 N 1.31028 * 126.45064 * 180.02562 * 7 6 5 9 9 O 1.21295 * 110.04399 * 180.02562 * 8 7 6 10 10 C 1.33682 * 110.08022 * 359.97438 * 9 8 7 11 11 C 1.50701 * 126.40250 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47212 * 270.02287 * 11 10 9 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00362 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99850 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47052 * 89.99717 * 17 15 13 19 19 H 1.48495 * 109.47307 * 209.99656 * 17 15 13 20 20 H 1.48500 * 109.47143 * 330.00164 * 17 15 13 21 21 N 1.30927 * 107.19833 * 0.26076 * 10 9 8 22 22 H 1.09001 * 109.46971 * 270.10208 * 1 2 3 23 23 H 1.08995 * 109.46478 * 30.10303 * 1 2 3 24 24 H 1.08994 * 109.46821 * 150.10394 * 1 2 3 25 25 H 1.08004 * 126.47913 * 0.05148 * 3 2 1 26 26 H 1.07997 * 125.66238 * 179.78021 * 4 3 2 27 27 H 1.09002 * 109.47060 * 30.02342 * 11 10 9 28 28 H 1.09001 * 109.47380 * 150.02429 * 11 10 9 29 29 H 1.09002 * 109.47153 * 299.99998 * 12 11 10 30 30 H 1.08998 * 109.47533 * 59.99628 * 12 11 10 31 31 H 0.96994 * 119.99814 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3473 1.1300 0.0000 4 6 3.6174 0.6780 -0.0059 5 8 3.5960 -0.6639 -0.0047 6 6 2.3184 -1.0914 0.0025 7 6 1.8758 -2.5008 0.0055 8 7 0.6370 -2.9277 0.0120 9 8 0.6152 -4.1405 0.0132 10 6 1.8623 -4.6219 0.0070 11 6 2.2598 -6.0756 0.0056 12 6 2.4012 -6.5670 1.4476 13 6 2.7981 -8.0207 1.4464 14 1 2.9361 -8.5420 0.5106 15 6 2.9861 -8.6852 2.6398 16 7 3.3329 -9.9538 2.6386 17 14 2.7495 -7.7830 4.2583 18 1 1.3360 -7.9121 4.6950 19 1 3.6417 -8.3726 5.2887 20 1 3.0827 -6.3471 4.0780 21 7 2.6739 -3.5946 0.0073 22 1 -0.3633 0.0018 1.0277 23 1 -0.3632 0.8891 -0.5154 24 1 -0.3633 -0.8909 -0.5122 25 1 2.0336 2.1635 0.0008 26 1 4.5048 1.2935 -0.0108 27 1 1.4946 -6.6610 -0.5043 28 1 3.2116 -6.1916 -0.5127 29 1 3.1664 -5.9816 1.9576 30 1 1.4495 -6.4510 1.9661 31 1 3.4648 -10.4212 3.4782 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235777545.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:42 Heat of formation + Delta-G solvation = 53.239128 kcal Electronic energy + Delta-G solvation = -17038.416651 eV Core-core repulsion = 14096.067737 eV Total energy + Delta-G solvation = -2942.348914 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -46.67762 -43.70288 -37.24529 -36.38949 -35.37085 -34.36387 -32.46586 -31.09488 -28.71824 -28.05796 -25.50303 -24.19324 -22.71481 -22.46536 -20.92052 -19.41856 -19.13215 -18.76251 -17.81641 -17.24985 -16.38693 -16.18073 -15.82586 -15.24887 -14.76585 -14.51101 -14.16290 -13.86745 -13.81524 -13.67468 -13.57463 -13.19990 -12.94239 -12.67795 -12.52851 -12.23350 -11.97076 -11.79454 -11.46598 -11.22953 -10.77465 -10.71966 -9.47286 -8.29977 -6.34337 -0.38357 0.33422 1.26110 1.34865 1.37917 1.41467 1.47367 1.65230 1.70627 2.34370 2.50131 3.05720 3.19306 3.72202 3.74806 3.85609 4.27430 4.34666 4.39003 4.51257 4.58387 4.66082 4.69836 4.77504 4.84893 5.04249 5.12702 5.22469 5.33700 5.45801 5.56771 5.93140 6.22698 6.73240 6.93273 7.30309 8.85721 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.035209 B = 0.004704 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.050693 B = 5950.638789 C = 6125.531715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.111 4.111 3 C -0.220 4.220 4 C 0.003 3.997 5 O -0.180 6.180 6 C -0.006 4.006 7 C 0.234 3.766 8 N -0.374 5.374 9 O 0.078 5.922 10 C 0.220 3.780 11 C -0.009 4.009 12 C -0.005 4.005 13 C -0.527 4.527 14 H 0.055 0.945 15 C 0.017 3.983 16 N -0.942 5.942 17 Si 0.936 3.064 18 H -0.264 1.264 19 H -0.283 1.283 20 H -0.260 1.260 21 N -0.505 5.505 22 H 0.077 0.923 23 H 0.099 0.901 24 H 0.061 0.939 25 H 0.193 0.807 26 H 0.258 0.742 27 H 0.123 0.877 28 H 0.113 0.887 29 H 0.017 0.983 30 H 0.027 0.973 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.855 23.345 -5.354 24.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.239 4.239 4 C -0.065 4.065 5 O -0.075 6.075 6 C -0.057 4.057 7 C -0.035 4.035 8 N -0.085 5.085 9 O 0.020 5.980 10 C 0.000 4.000 11 C -0.048 4.048 12 C -0.044 4.044 13 C -0.565 4.565 14 H 0.073 0.927 15 C -0.181 4.181 16 N -0.582 5.582 17 Si 0.760 3.240 18 H -0.188 1.188 19 H -0.208 1.208 20 H -0.184 1.184 21 N -0.239 5.239 22 H 0.096 0.904 23 H 0.117 0.883 24 H 0.080 0.920 25 H 0.210 0.790 26 H 0.273 0.727 27 H 0.141 0.859 28 H 0.131 0.869 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.865 23.699 -5.248 24.579 hybrid contribution 0.140 -0.371 0.831 0.921 sum -3.726 23.328 -4.417 24.033 Atomic orbital electron populations 1.20408 0.87358 1.03856 1.03200 1.20951 0.98416 0.91177 1.00999 1.22093 0.91645 1.00723 1.09417 1.25367 1.02022 0.78745 1.00414 1.84102 1.26974 1.24919 1.71500 1.18050 0.83081 0.87891 1.16661 1.22612 0.85743 0.92958 1.02144 1.74895 1.19334 0.91549 1.22727 1.85283 1.32203 1.14604 1.65870 1.29437 0.78741 0.99988 0.91820 1.20414 1.04598 0.79138 1.00676 1.19499 0.97223 0.95277 0.92370 1.21238 1.46612 0.94627 0.94038 0.92696 1.25766 0.94279 0.95328 1.02771 1.70013 1.49006 1.10995 1.28210 0.85870 0.78952 0.79570 0.79564 1.18843 1.20830 1.18376 1.72205 1.31887 0.97419 1.22406 0.90415 0.88254 0.92036 0.78997 0.72659 0.85932 0.86877 0.96473 0.95472 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.86 9.94 71.24 0.71 -1.15 16 2 C -0.11 -2.67 6.20 -19.75 -0.12 -2.79 16 3 C -0.22 -3.67 10.84 22.11 0.24 -3.43 16 4 C 0.00 0.06 12.08 67.03 0.81 0.87 16 5 O -0.18 -5.11 10.67 -5.67 -0.06 -5.17 16 6 C -0.01 -0.19 7.26 24.26 0.18 -0.01 16 7 C 0.23 8.44 8.02 136.96 1.10 9.53 16 8 N -0.37 -12.93 10.29 -58.80 -0.61 -13.53 16 9 O 0.08 2.71 11.29 74.49 0.84 3.55 16 10 C 0.22 7.89 7.74 88.35 0.68 8.57 16 11 C -0.01 -0.34 5.78 29.85 0.17 -0.17 16 12 C -0.01 -0.23 4.02 29.85 0.12 -0.11 16 13 C -0.53 -28.50 9.66 25.60 0.25 -28.25 16 14 H 0.05 3.16 7.99 -2.91 -0.02 3.13 16 15 C 0.02 0.94 5.47 84.65 0.46 1.41 16 16 N -0.94 -57.04 13.96 21.45 0.30 -56.74 16 17 Si 0.94 43.67 27.47 68.60 1.88 45.56 16 18 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.26 -11.74 6.54 99.48 0.65 -11.09 16 21 N -0.51 -19.61 11.58 -302.29 -3.50 -23.11 16 22 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 23 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.06 1.47 6.59 -2.39 -0.02 1.46 16 25 H 0.19 1.69 8.06 -2.91 -0.02 1.67 16 26 H 0.26 1.50 8.06 -2.91 -0.02 1.47 16 27 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 28 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 29 H 0.02 0.79 7.20 -2.39 -0.02 0.78 16 30 H 0.03 1.17 7.57 -2.39 -0.02 1.16 16 31 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -69.32 279.37 4.55 -64.77 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: 1.10 Total: 0.22 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 4.60 Total: -15.53 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -3.81 Total: -93.39 kcal Atomic # 8 Polarization: -2.40 SS G_CDS: 0.78 Total: -1.62 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.56 kcal Total: -69.32 4.55 -64.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235777545.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.009 kcal (2) G-P(sol) polarization free energy of solvation -69.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds