Wall clock time and date at job start Mon Mar 30 2020 06:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86798 * 119.99982 * 2 1 4 4 H 1.48495 * 109.47014 * 274.64993 * 3 2 1 5 5 H 1.48497 * 109.47355 * 34.65517 * 3 2 1 6 6 H 1.48505 * 109.46923 * 154.65526 * 3 2 1 7 7 C 1.39891 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00043 * 162.16462 * 7 2 1 9 9 C 1.41211 * 120.00228 * 342.15691 * 7 2 1 10 10 C 1.40834 * 120.18017 * 155.14532 * 9 7 2 11 11 C 1.36435 * 119.81515 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.18246 * 0.02562 * 11 10 9 13 13 O 1.35678 * 119.82121 * 179.97438 * 12 11 10 14 14 C 1.42902 * 117.00632 * 179.97438 * 13 12 11 15 15 O 1.42901 * 109.47018 * 74.99539 * 14 13 12 16 16 C 1.42907 * 113.99574 * 75.00379 * 15 14 13 17 17 C 1.53000 * 109.46718 * 179.97438 * 16 15 14 18 18 C 1.52997 * 117.49896 * 243.62215 * 17 16 15 19 19 C 1.53001 * 60.00186 * 252.51325 * 18 17 16 20 20 C 1.39311 * 120.36926 * 0.27170 * 12 11 10 21 21 C 1.36447 * 120.17846 * 359.44019 * 20 12 11 22 22 H 0.97003 * 119.99725 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.09458 * 0.02562 * 10 9 7 24 24 H 1.08000 * 119.91299 * 179.97438 * 11 10 9 25 25 H 1.09000 * 109.47175 * 194.99684 * 14 13 12 26 26 H 1.09003 * 109.46667 * 314.99678 * 14 13 12 27 27 H 1.08998 * 109.47025 * 299.99970 * 16 15 14 28 28 H 1.09001 * 109.47262 * 60.00254 * 16 15 14 29 29 H 1.08999 * 115.55271 * 29.33224 * 17 16 15 30 30 H 1.09003 * 117.49757 * 0.02562 * 18 17 16 31 31 H 1.09005 * 117.50198 * 145.02231 * 18 17 16 32 32 H 1.09002 * 117.49328 * 252.51135 * 19 18 17 33 33 H 1.08996 * 117.49884 * 107.48679 * 19 18 17 34 34 H 1.07998 * 119.91152 * 179.70513 * 20 12 11 35 35 H 1.08001 * 120.09266 * 180.26858 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3920 2.1031 -1.3954 5 1 1.4930 2.6223 0.7961 6 1 3.5862 1.4137 0.5993 7 6 2.0083 -1.2115 0.0005 8 1 3.0494 -1.2342 -0.2859 9 6 1.3531 -2.4049 0.3758 10 6 1.8225 -3.6475 -0.0921 11 6 1.1835 -4.7958 0.2747 12 6 0.0694 -4.7414 1.1092 13 8 -0.5608 -5.8879 1.4690 14 6 -1.6965 -5.7623 2.3271 15 8 -2.8097 -5.2744 1.5756 16 6 -3.4068 -6.2515 0.7206 17 6 -4.5820 -5.6222 -0.0303 18 6 -5.9781 -6.1848 0.2439 19 6 -5.2836 -6.4768 -1.0878 20 6 -0.4052 -3.5159 1.5715 21 6 0.2259 -2.3587 1.2188 22 1 -0.4850 0.8401 -0.0004 23 1 2.6858 -3.6914 -0.7395 24 1 1.5419 -5.7496 -0.0836 25 1 -1.9423 -6.7366 2.7495 26 1 -1.4679 -5.0642 3.1325 27 1 -2.6667 -6.6084 0.0043 28 1 -3.7653 -7.0883 1.3200 29 1 -4.4988 -4.5524 -0.2218 30 1 -6.0594 -7.0029 0.9595 31 1 -6.8138 -5.4850 0.2329 32 1 -5.6625 -5.9691 -1.9748 33 1 -4.9080 -7.4873 -1.2485 34 1 -1.2723 -3.4820 2.2143 35 1 -0.1405 -1.4098 1.5815 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236236712.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:23 Heat of formation + Delta-G solvation = -47.903016 kcal Electronic energy + Delta-G solvation = -17426.298569 eV Core-core repulsion = 14583.104146 eV Total energy + Delta-G solvation = -2843.194423 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.18536 -37.82792 -36.64628 -35.38095 -33.24938 -29.58919 -29.18053 -27.56226 -25.47914 -24.15052 -22.43369 -21.15888 -20.59449 -20.42671 -17.49093 -17.23618 -16.36051 -15.96588 -15.80395 -15.00831 -14.33080 -13.90909 -13.85976 -13.70246 -12.77525 -12.56315 -12.46297 -12.12785 -11.79230 -11.61722 -11.18256 -11.11898 -11.02492 -10.80637 -10.66710 -10.44263 -10.36386 -10.05445 -9.75647 -9.60182 -9.24374 -8.95326 -7.57280 -6.99271 -6.68390 -4.21368 2.80773 3.03536 3.10588 3.14803 3.24101 3.63844 3.95034 3.98184 4.21255 4.67008 4.80490 4.88318 5.08003 5.32735 5.35601 5.54751 5.57017 5.64895 5.74237 5.80734 5.86902 6.03582 6.24027 6.25902 6.33747 6.71091 6.95357 7.11801 7.27701 7.35107 7.47152 7.62092 7.98905 8.05406 8.19930 8.46333 8.69441 8.94667 9.04051 10.26186 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.026400 B = 0.005066 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.362720 B = 5525.319371 C = 6118.793553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.090 3.910 10 C -0.201 4.201 11 C -0.112 4.112 12 C -0.012 4.012 13 O -0.344 6.344 14 C 0.221 3.779 15 O -0.389 6.389 16 C 0.096 3.904 17 C -0.149 4.149 18 C -0.180 4.180 19 C -0.175 4.175 20 C -0.159 4.159 21 C -0.136 4.136 22 H 0.279 0.721 23 H 0.098 0.902 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.578 -8.244 2.067 11.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.088 3.912 10 C -0.221 4.221 11 C -0.131 4.131 12 C -0.055 4.055 13 O -0.262 6.262 14 C 0.107 3.893 15 O -0.310 6.310 16 C 0.019 3.981 17 C -0.167 4.167 18 C -0.217 4.217 19 C -0.212 4.212 20 C -0.178 4.178 21 C -0.156 4.156 22 H 0.090 0.910 23 H 0.117 0.883 24 H 0.113 0.887 25 H 0.103 0.897 26 H 0.111 0.889 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.133 0.867 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.792 -8.077 2.014 11.402 hybrid contribution 0.197 0.739 0.011 0.764 sum -7.596 -7.338 2.025 10.754 Atomic orbital electron populations 1.69859 1.07509 1.29000 1.36081 1.25876 0.94685 1.01175 0.92416 0.86351 0.80749 0.80934 0.78966 1.19675 1.20134 1.18497 1.19466 0.98059 0.91275 1.40645 0.90550 1.17599 0.91766 0.92130 0.89748 1.20564 1.03416 0.92279 1.05800 1.19616 0.95882 0.97551 1.00053 1.18508 0.97460 0.83859 1.05648 1.85943 1.41921 1.31983 1.66333 1.23802 0.77069 0.99449 0.88985 1.88067 1.45681 1.38838 1.58385 1.21947 0.93472 0.90067 0.92592 1.22180 0.92219 1.00496 1.01794 1.23052 0.95922 1.03410 0.99347 1.22948 1.04048 1.00993 0.93237 1.20640 1.00821 0.92653 1.03677 1.20945 0.98486 0.96524 0.99599 0.91026 0.88346 0.88749 0.89657 0.88863 0.92235 0.93699 0.86653 0.88925 0.88788 0.88490 0.88787 0.88262 0.86212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.15 10.97 55.55 0.61 -20.54 16 2 C 0.08 1.93 5.13 -17.34 -0.09 1.84 16 3 Si 0.91 18.95 29.60 -169.99 -5.03 13.92 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.46 -12.55 9.04 -37.83 -0.34 -12.89 16 8 H 0.08 1.98 7.91 -52.48 -0.41 1.56 16 9 C 0.09 2.45 5.57 -106.81 -0.60 1.86 16 10 C -0.20 -5.07 9.74 -39.25 -0.38 -5.45 16 11 C -0.11 -2.68 9.92 -39.83 -0.40 -3.07 16 12 C -0.01 -0.29 6.65 -38.78 -0.26 -0.55 16 13 O -0.34 -7.10 10.18 -42.55 -0.43 -7.53 16 14 C 0.22 3.66 6.39 101.05 0.65 4.30 16 15 O -0.39 -6.90 9.79 -59.04 -0.58 -7.48 16 16 C 0.10 1.41 6.10 37.16 0.23 1.64 16 17 C -0.15 -2.01 6.06 -90.62 -0.55 -2.56 16 18 C -0.18 -1.93 10.18 -26.73 -0.27 -2.20 16 19 C -0.18 -1.91 10.25 -26.73 -0.27 -2.18 16 20 C -0.16 -3.88 8.70 -39.83 -0.35 -4.23 16 21 C -0.14 -3.64 8.64 -39.25 -0.34 -3.98 16 22 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 23 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 24 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 25 H 0.09 1.10 8.01 -51.93 -0.42 0.68 16 26 H 0.09 1.50 6.70 -51.93 -0.35 1.15 16 27 H 0.06 0.94 8.03 -51.93 -0.42 0.53 16 28 H 0.04 0.55 7.85 -51.93 -0.41 0.14 16 29 H 0.12 1.76 8.14 -51.93 -0.42 1.34 16 30 H 0.09 0.89 8.03 -51.93 -0.42 0.47 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 2.23 5.82 -52.49 -0.31 1.93 16 35 H 0.12 3.29 6.18 -52.49 -0.32 2.97 16 LS Contribution 299.73 15.07 4.52 4.52 Total: -1.00 -29.25 299.73 -8.61 -37.86 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -4.72 Total: 6.74 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -2.97 Total: -27.48 kcal Atomic # 7 Polarization: -21.15 SS G_CDS: 0.61 Total: -20.54 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -1.01 Total: -15.01 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.25 -8.61 -37.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236236712.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.048 kcal (2) G-P(sol) polarization free energy of solvation -29.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds