Wall clock time and date at job start Mon Mar 30 2020 06:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86798 * 119.99982 * 2 1 4 4 H 1.48495 * 109.47014 * 274.64993 * 3 2 1 5 5 H 1.48497 * 109.47355 * 34.65517 * 3 2 1 6 6 H 1.48505 * 109.46923 * 154.65526 * 3 2 1 7 7 C 1.39891 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00043 * 162.16462 * 7 2 1 9 9 C 1.41211 * 120.00228 * 342.15691 * 7 2 1 10 10 C 1.40834 * 120.18017 * 155.14532 * 9 7 2 11 11 C 1.36435 * 119.81515 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.18246 * 0.02562 * 11 10 9 13 13 O 1.35678 * 119.82121 * 179.97438 * 12 11 10 14 14 C 1.42902 * 117.00632 * 179.97438 * 13 12 11 15 15 O 1.42901 * 109.47018 * 74.99539 * 14 13 12 16 16 C 1.42907 * 113.99574 * 75.00379 * 15 14 13 17 17 C 1.53000 * 109.46718 * 179.97438 * 16 15 14 18 18 C 1.52997 * 117.49896 * 243.62215 * 17 16 15 19 19 C 1.53001 * 60.00186 * 252.51325 * 18 17 16 20 20 C 1.39311 * 120.36926 * 0.27170 * 12 11 10 21 21 C 1.36447 * 120.17846 * 359.44019 * 20 12 11 22 22 H 0.97003 * 119.99725 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.09458 * 0.02562 * 10 9 7 24 24 H 1.08000 * 119.91299 * 179.97438 * 11 10 9 25 25 H 1.09000 * 109.47175 * 194.99684 * 14 13 12 26 26 H 1.09003 * 109.46667 * 314.99678 * 14 13 12 27 27 H 1.08998 * 109.47025 * 299.99970 * 16 15 14 28 28 H 1.09001 * 109.47262 * 60.00254 * 16 15 14 29 29 H 1.08999 * 115.55271 * 29.33224 * 17 16 15 30 30 H 1.09003 * 117.49757 * 0.02562 * 18 17 16 31 31 H 1.09005 * 117.50198 * 145.02231 * 18 17 16 32 32 H 1.09002 * 117.49328 * 252.51135 * 19 18 17 33 33 H 1.08996 * 117.49884 * 107.48679 * 19 18 17 34 34 H 1.07998 * 119.91152 * 179.70513 * 20 12 11 35 35 H 1.08001 * 120.09266 * 180.26858 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3920 2.1031 -1.3954 5 1 1.4930 2.6223 0.7961 6 1 3.5862 1.4137 0.5993 7 6 2.0083 -1.2115 0.0005 8 1 3.0494 -1.2342 -0.2859 9 6 1.3531 -2.4049 0.3758 10 6 1.8225 -3.6475 -0.0921 11 6 1.1835 -4.7958 0.2747 12 6 0.0694 -4.7414 1.1092 13 8 -0.5608 -5.8879 1.4690 14 6 -1.6965 -5.7623 2.3271 15 8 -2.8097 -5.2744 1.5756 16 6 -3.4068 -6.2515 0.7206 17 6 -4.5820 -5.6222 -0.0303 18 6 -5.9781 -6.1848 0.2439 19 6 -5.2836 -6.4768 -1.0878 20 6 -0.4052 -3.5159 1.5715 21 6 0.2259 -2.3587 1.2188 22 1 -0.4850 0.8401 -0.0004 23 1 2.6858 -3.6914 -0.7395 24 1 1.5419 -5.7496 -0.0836 25 1 -1.9423 -6.7366 2.7495 26 1 -1.4679 -5.0642 3.1325 27 1 -2.6667 -6.6084 0.0043 28 1 -3.7653 -7.0883 1.3200 29 1 -4.4988 -4.5524 -0.2218 30 1 -6.0594 -7.0029 0.9595 31 1 -6.8138 -5.4850 0.2329 32 1 -5.6625 -5.9691 -1.9748 33 1 -4.9080 -7.4873 -1.2485 34 1 -1.2723 -3.4820 2.2143 35 1 -0.1405 -1.4098 1.5815 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236236712.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:23 Heat of formation + Delta-G solvation = -63.184078 kcal Electronic energy + Delta-G solvation = -17426.961206 eV Core-core repulsion = 14583.104146 eV Total energy + Delta-G solvation = -2843.857060 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.78118 -39.19189 -38.11826 -36.80715 -35.15727 -31.52932 -31.09410 -28.78001 -27.15971 -25.76248 -23.27069 -23.05545 -22.26948 -21.67345 -19.28453 -18.99019 -17.73823 -17.53159 -17.00676 -16.67215 -15.85813 -15.58695 -15.15723 -14.95730 -14.55154 -14.21926 -14.13800 -13.83487 -13.62566 -12.98513 -12.76251 -12.48596 -12.41810 -12.25520 -12.21435 -11.82874 -11.67374 -11.54787 -11.34890 -11.18431 -10.89792 -10.59044 -9.54008 -8.94068 -8.59669 -6.23112 0.94843 1.06087 1.39362 1.49777 1.55881 2.22986 2.53411 2.65654 2.75789 2.96934 3.71876 3.85228 3.96240 4.07629 4.14683 4.26403 4.28257 4.42775 4.45944 4.54899 4.73532 4.74890 4.87149 4.98192 5.03029 5.15941 5.19737 5.22658 5.38012 5.49790 5.67383 5.97960 6.07027 6.08475 6.24537 6.55461 6.78241 6.95474 7.09289 8.37263 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.026400 B = 0.005066 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.362720 B = 5525.319371 C = 6118.793553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.033 3.967 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.501 4.501 8 H 0.077 0.923 9 C 0.057 3.943 10 C -0.209 4.209 11 C -0.120 4.120 12 C -0.002 4.002 13 O -0.347 6.347 14 C 0.211 3.789 15 O -0.413 6.413 16 C 0.094 3.906 17 C -0.183 4.183 18 C -0.162 4.162 19 C -0.165 4.165 20 C -0.162 4.162 21 C -0.159 4.159 22 H 0.286 0.714 23 H 0.110 0.890 24 H 0.121 0.879 25 H 0.132 0.868 26 H 0.096 0.904 27 H 0.043 0.957 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.220 -9.300 2.333 12.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.531 4.531 8 H 0.095 0.905 9 C 0.055 3.945 10 C -0.229 4.229 11 C -0.139 4.139 12 C -0.045 4.045 13 O -0.265 6.265 14 C 0.098 3.902 15 O -0.334 6.334 16 C 0.018 3.982 17 C -0.201 4.201 18 C -0.199 4.199 19 C -0.202 4.202 20 C -0.181 4.181 21 C -0.178 4.178 22 H 0.097 0.903 23 H 0.128 0.872 24 H 0.139 0.861 25 H 0.149 0.851 26 H 0.113 0.887 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.449 -9.159 2.282 12.669 hybrid contribution 0.278 0.903 -0.052 0.946 sum -8.172 -8.257 2.230 11.829 Atomic orbital electron populations 1.69921 1.09082 1.30376 1.36610 1.26760 0.95436 1.04550 0.91277 0.85194 0.79196 0.75978 0.79327 1.18767 1.19175 1.18125 1.19740 0.98391 0.92442 1.42489 0.90465 1.17954 0.92593 0.93291 0.90657 1.20790 1.03923 0.92236 1.05901 1.19927 0.95850 0.98240 0.99848 1.18620 0.97060 0.84511 1.04318 1.85953 1.43154 1.30364 1.67007 1.24277 0.75641 1.02125 0.88120 1.88047 1.45820 1.40609 1.58910 1.22105 0.93262 0.90433 0.92382 1.22122 0.93878 0.99429 1.04680 1.23158 0.94056 1.03339 0.99331 1.23068 1.02722 1.01006 0.93383 1.20774 1.01045 0.92474 1.03768 1.20904 0.99432 0.96699 1.00810 0.90315 0.87178 0.86113 0.85077 0.88653 0.93899 0.90637 0.89527 0.87210 0.88006 0.87900 0.87442 0.86864 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.30 10.97 21.82 0.24 -45.06 16 2 C 0.03 1.74 5.13 85.23 0.44 2.17 16 3 Si 0.98 39.15 29.60 68.60 2.03 41.18 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 6 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 7 C -0.50 -27.81 9.04 23.40 0.21 -27.60 16 8 H 0.08 4.10 7.91 -2.91 -0.02 4.08 16 9 C 0.06 3.21 5.57 -21.28 -0.12 3.09 16 10 C -0.21 -10.66 9.74 22.48 0.22 -10.44 16 11 C -0.12 -5.65 9.92 22.11 0.22 -5.43 16 12 C 0.00 -0.08 6.65 22.79 0.15 0.07 16 13 O -0.35 -13.74 10.18 -67.19 -0.68 -14.42 16 14 C 0.21 6.57 6.39 113.37 0.72 7.30 16 15 O -0.41 -14.21 9.79 -126.21 -1.24 -15.45 16 16 C 0.09 2.63 6.10 71.98 0.44 3.07 16 17 C -0.18 -4.80 6.06 -10.79 -0.07 -4.87 16 18 C -0.16 -3.08 10.18 30.59 0.31 -2.76 16 19 C -0.16 -3.26 10.25 30.60 0.31 -2.95 16 20 C -0.16 -7.99 8.70 22.11 0.19 -7.80 16 21 C -0.16 -8.78 8.64 22.49 0.19 -8.58 16 22 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 23 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 24 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 25 H 0.13 2.88 8.01 -2.39 -0.02 2.86 16 26 H 0.10 2.91 6.70 -2.39 -0.02 2.89 16 27 H 0.04 1.31 8.03 -2.39 -0.02 1.30 16 28 H 0.08 1.62 7.85 -2.39 -0.02 1.60 16 29 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.11 1.72 8.03 -2.39 -0.02 1.70 16 31 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.11 5.14 5.82 -2.91 -0.02 5.12 16 35 H 0.10 5.94 6.18 -2.91 -0.02 5.92 16 Total: -1.00 -64.18 299.73 4.66 -59.53 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 1.08 Total: 28.95 kcal Atomic # 6 Polarization: -57.97 SS G_CDS: 3.23 Total: -54.74 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.24 Total: -45.06 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -1.92 Total: -29.87 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -64.18 4.66 -59.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236236712.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.657 kcal (2) G-P(sol) polarization free energy of solvation -64.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds