Wall clock time and date at job start Mon Mar 30 2020 06:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86793 * 119.99873 * 2 1 4 4 H 1.48509 * 109.47143 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47452 * 299.99864 * 3 2 1 6 6 H 1.48495 * 109.47595 * 60.00181 * 3 2 1 7 7 C 1.39949 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99627 * 197.85134 * 7 2 1 9 9 C 1.41391 * 120.00129 * 17.85075 * 7 2 1 10 10 C 1.40718 * 120.24500 * 204.37426 * 9 7 2 11 11 C 1.37613 * 119.74556 * 180.29972 * 10 9 7 12 12 C 1.38639 * 120.24809 * 359.47093 * 11 10 9 13 13 C 1.50702 * 119.74819 * 180.26072 * 12 11 10 14 14 C 1.53003 * 109.47037 * 270.24894 * 13 12 11 15 15 C 1.52990 * 109.47182 * 180.02562 * 14 13 12 16 16 C 1.53003 * 109.47182 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47410 * 179.97438 * 16 15 14 18 18 O 1.20825 * 119.99402 * 0.02562 * 17 16 15 19 19 O 1.34219 * 120.00304 * 179.97438 * 17 16 15 20 20 C 1.38633 * 120.50091 * 0.50905 * 12 11 10 21 21 C 1.37623 * 120.24497 * 359.77202 * 20 12 11 22 22 H 0.97001 * 120.00110 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.12385 * 0.02562 * 10 9 7 24 24 H 1.07999 * 119.87562 * 179.72347 * 11 10 9 25 25 H 1.08997 * 109.46974 * 30.24473 * 13 12 11 26 26 H 1.08997 * 109.46930 * 150.25367 * 13 12 11 27 27 H 1.09005 * 109.47170 * 300.00420 * 14 13 12 28 28 H 1.09008 * 109.47095 * 59.99744 * 14 13 12 29 29 H 1.09000 * 109.47528 * 299.99783 * 15 14 13 30 30 H 1.08995 * 109.47411 * 60.00190 * 15 14 13 31 31 H 1.09005 * 109.47170 * 300.00338 * 16 15 14 32 32 H 1.08999 * 109.47278 * 59.99704 * 16 15 14 33 33 H 0.96698 * 117.00319 * 180.02562 * 19 17 16 34 34 H 1.07996 * 119.87834 * 179.74460 * 20 12 11 35 35 H 1.08004 * 120.12120 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3964 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2862 9 6 1.3520 -2.4069 -0.3764 10 6 1.8259 -3.6500 0.0821 11 6 1.1833 -4.8069 -0.2951 12 6 0.0666 -4.7501 -1.1147 13 6 -0.6319 -6.0238 -1.5161 14 6 -0.0159 -6.5569 -2.8112 15 6 -0.7254 -7.8495 -3.2191 16 6 -0.1098 -8.3823 -4.5145 17 6 -0.8082 -9.6560 -4.9160 18 8 -1.7066 -10.0924 -4.2360 19 8 -0.4331 -10.3049 -6.0294 20 6 -0.4093 -3.5310 -1.5721 21 6 0.2209 -2.3617 -1.2122 22 1 -0.4850 0.8400 0.0004 23 1 2.6932 -3.6962 0.7240 24 1 1.5479 -5.7624 0.0520 25 1 -0.5162 -6.7660 -0.7264 26 1 -1.6915 -5.8228 -1.6737 27 1 -0.1314 -5.8146 -3.6010 28 1 1.0439 -6.7578 -2.6537 29 1 -0.6102 -8.5920 -2.4294 30 1 -1.7849 -7.6483 -3.3768 31 1 -0.2253 -7.6397 -5.3040 32 1 0.9499 -8.5835 -4.3573 33 1 -0.9108 -11.1172 -6.2461 34 1 -1.2776 -3.4988 -2.2134 35 1 -0.1513 -1.4130 -1.5699 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238628816.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:51 Heat of formation + Delta-G solvation = -108.062540 kcal Electronic energy + Delta-G solvation = -16686.108981 eV Core-core repulsion = 13840.305845 eV Total energy + Delta-G solvation = -2845.803136 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.40020 -37.77774 -36.46441 -35.33889 -33.67612 -31.46312 -29.30144 -28.79328 -26.06058 -23.74481 -21.71243 -20.95186 -20.62000 -19.65131 -18.21486 -17.27264 -16.55727 -16.44328 -15.32583 -14.88695 -14.41538 -13.78721 -13.61106 -13.58070 -12.75433 -12.56230 -12.44516 -12.05470 -11.88620 -11.72959 -11.55327 -11.23762 -11.10475 -10.96246 -10.84922 -10.70639 -10.44858 -10.24890 -10.16569 -9.50776 -9.34678 -9.09000 -7.42960 -7.24868 -6.73914 -4.31885 2.03789 2.75944 2.89083 3.07317 3.09361 3.13341 3.21409 3.94463 4.60084 4.73999 4.90068 5.03459 5.43333 5.47859 5.55693 5.68995 5.91910 5.94580 6.15855 6.22370 6.32259 6.34878 6.36937 6.50986 6.57277 6.74170 6.98151 7.10299 7.32640 7.40656 7.64169 7.70229 7.90798 8.08153 8.16465 8.32923 8.67006 8.92297 9.00719 10.20694 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.054770 B = 0.003307 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.101474 B = 8463.927939 C = 8515.470019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.107 3.893 10 C -0.226 4.226 11 C -0.089 4.089 12 C -0.211 4.211 13 C -0.054 4.054 14 C -0.112 4.112 15 C -0.110 4.110 16 C -0.114 4.114 17 C 0.476 3.524 18 O -0.517 6.517 19 O -0.521 6.521 20 C -0.098 4.098 21 C -0.164 4.164 22 H 0.279 0.721 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.407 0.593 34 H 0.085 0.915 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.455 -11.456 -8.569 14.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.105 3.895 10 C -0.245 4.245 11 C -0.107 4.107 12 C -0.212 4.212 13 C -0.091 4.091 14 C -0.149 4.149 15 C -0.148 4.148 16 C -0.152 4.152 17 C 0.319 3.681 18 O -0.405 6.405 19 O -0.333 6.333 20 C -0.117 4.117 21 C -0.184 4.184 22 H 0.090 0.910 23 H 0.108 0.892 24 H 0.104 0.896 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.265 0.735 34 H 0.104 0.896 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.691 -11.043 -8.263 13.809 hybrid contribution -0.009 0.250 -0.098 0.268 sum -0.700 -10.793 -8.360 13.671 Atomic orbital electron populations 1.69841 1.07572 1.29006 1.35605 1.25904 0.94703 1.01273 0.92305 0.86299 0.81022 0.81092 0.78515 1.18435 1.19743 1.20046 1.19608 0.98105 0.91324 1.40356 0.90527 1.17622 0.91216 0.92017 0.88635 1.20969 1.03785 0.92963 1.06802 1.20374 0.95762 0.96285 0.98294 1.19063 1.00899 0.93251 1.08016 1.20194 0.98175 0.95273 0.95463 1.21635 0.99739 0.94957 0.98602 1.21541 1.00465 0.98166 0.94618 1.21496 1.01451 0.91546 1.00668 1.23816 0.81173 0.85854 0.77226 1.90725 1.29900 1.67202 1.52694 1.84565 1.63236 1.41657 1.43861 1.20547 0.98566 0.92788 0.99770 1.21315 0.99315 0.96742 1.00992 0.91006 0.89189 0.89646 0.92962 0.92868 0.91900 0.91951 0.91261 0.91241 0.87561 0.87591 0.73469 0.89635 0.86551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.70 10.95 55.55 0.61 -20.09 16 2 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 3 Si 0.91 18.72 29.59 -169.99 -5.03 13.69 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.46 -12.42 9.05 -37.74 -0.34 -12.76 16 8 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 9 C 0.11 2.88 5.57 -106.83 -0.60 2.29 16 10 C -0.23 -5.57 9.80 -38.87 -0.38 -5.95 16 11 C -0.09 -1.98 9.67 -39.66 -0.38 -2.36 16 12 C -0.21 -4.52 5.16 -104.33 -0.54 -5.05 16 13 C -0.05 -0.91 5.33 -27.88 -0.15 -1.05 16 14 C -0.11 -1.56 5.20 -26.73 -0.14 -1.69 16 15 C -0.11 -1.30 4.50 -26.73 -0.12 -1.42 16 16 C -0.11 -1.08 5.81 -27.88 -0.16 -1.25 16 17 C 0.48 5.03 8.33 36.01 0.30 5.33 16 18 O -0.52 -7.19 16.74 -18.75 -0.31 -7.50 16 19 O -0.52 -4.20 13.42 -39.23 -0.53 -4.72 16 20 C -0.10 -2.28 9.67 -39.66 -0.38 -2.66 16 21 C -0.16 -4.28 8.70 -38.87 -0.34 -4.62 16 22 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 23 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 24 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 25 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 26 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 29 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 30 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 31 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.41 1.60 9.10 45.56 0.41 2.01 16 34 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.12 3.13 6.16 -52.48 -0.32 2.81 16 LS Contribution 304.53 15.07 4.59 4.59 Total: -1.00 -30.10 304.53 -8.09 -38.19 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -4.10 Total: 5.24 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: -3.32 Total: -29.39 kcal Atomic # 7 Polarization: -20.70 SS G_CDS: 0.61 Total: -20.09 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.84 Total: -12.23 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.10 -8.09 -38.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238628816.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.876 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds