Wall clock time and date at job start Mon Mar 30 2020 06:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86793 * 119.99873 * 2 1 4 4 H 1.48509 * 109.47143 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47452 * 299.99864 * 3 2 1 6 6 H 1.48495 * 109.47595 * 60.00181 * 3 2 1 7 7 C 1.39949 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99627 * 197.85134 * 7 2 1 9 9 C 1.41391 * 120.00129 * 17.85075 * 7 2 1 10 10 C 1.40718 * 120.24500 * 204.37426 * 9 7 2 11 11 C 1.37613 * 119.74556 * 180.29972 * 10 9 7 12 12 C 1.38639 * 120.24809 * 359.47093 * 11 10 9 13 13 C 1.50702 * 119.74819 * 180.26072 * 12 11 10 14 14 C 1.53003 * 109.47037 * 270.24894 * 13 12 11 15 15 C 1.52990 * 109.47182 * 180.02562 * 14 13 12 16 16 C 1.53003 * 109.47182 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47410 * 179.97438 * 16 15 14 18 18 O 1.20825 * 119.99402 * 0.02562 * 17 16 15 19 19 O 1.34219 * 120.00304 * 179.97438 * 17 16 15 20 20 C 1.38633 * 120.50091 * 0.50905 * 12 11 10 21 21 C 1.37623 * 120.24497 * 359.77202 * 20 12 11 22 22 H 0.97001 * 120.00110 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.12385 * 0.02562 * 10 9 7 24 24 H 1.07999 * 119.87562 * 179.72347 * 11 10 9 25 25 H 1.08997 * 109.46974 * 30.24473 * 13 12 11 26 26 H 1.08997 * 109.46930 * 150.25367 * 13 12 11 27 27 H 1.09005 * 109.47170 * 300.00420 * 14 13 12 28 28 H 1.09008 * 109.47095 * 59.99744 * 14 13 12 29 29 H 1.09000 * 109.47528 * 299.99783 * 15 14 13 30 30 H 1.08995 * 109.47411 * 60.00190 * 15 14 13 31 31 H 1.09005 * 109.47170 * 300.00338 * 16 15 14 32 32 H 1.08999 * 109.47278 * 59.99704 * 16 15 14 33 33 H 0.96698 * 117.00319 * 180.02562 * 19 17 16 34 34 H 1.07996 * 119.87834 * 179.74460 * 20 12 11 35 35 H 1.08004 * 120.12120 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3964 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2862 9 6 1.3520 -2.4069 -0.3764 10 6 1.8259 -3.6500 0.0821 11 6 1.1833 -4.8069 -0.2951 12 6 0.0666 -4.7501 -1.1147 13 6 -0.6319 -6.0238 -1.5161 14 6 -0.0159 -6.5569 -2.8112 15 6 -0.7254 -7.8495 -3.2191 16 6 -0.1098 -8.3823 -4.5145 17 6 -0.8082 -9.6560 -4.9160 18 8 -1.7066 -10.0924 -4.2360 19 8 -0.4331 -10.3049 -6.0294 20 6 -0.4093 -3.5310 -1.5721 21 6 0.2209 -2.3617 -1.2122 22 1 -0.4850 0.8400 0.0004 23 1 2.6932 -3.6962 0.7240 24 1 1.5479 -5.7624 0.0520 25 1 -0.5162 -6.7660 -0.7264 26 1 -1.6915 -5.8228 -1.6737 27 1 -0.1314 -5.8146 -3.6010 28 1 1.0439 -6.7578 -2.6537 29 1 -0.6102 -8.5920 -2.4294 30 1 -1.7849 -7.6483 -3.3768 31 1 -0.2253 -7.6397 -5.3040 32 1 0.9499 -8.5835 -4.3573 33 1 -0.9108 -11.1172 -6.2461 34 1 -1.2776 -3.4988 -2.2134 35 1 -0.1513 -1.4130 -1.5699 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238628816.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:51 Heat of formation + Delta-G solvation = -124.558953 kcal Electronic energy + Delta-G solvation = -16686.824319 eV Core-core repulsion = 13840.305845 eV Total energy + Delta-G solvation = -2846.518474 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.20017 -39.55434 -37.27300 -36.59903 -35.33682 -32.91667 -31.15068 -30.32134 -27.55636 -25.18705 -22.95725 -22.77811 -21.49158 -21.33155 -19.19285 -18.99064 -17.35668 -17.28377 -17.13459 -16.10909 -15.98911 -15.56741 -15.13162 -14.46358 -14.37893 -13.80541 -13.71392 -13.64810 -13.44370 -13.17147 -12.80750 -12.54022 -12.50222 -12.42808 -12.09372 -11.92647 -11.89074 -11.58181 -11.44123 -11.23874 -11.15556 -10.95035 -9.32113 -9.13026 -8.61272 -6.29817 0.99063 1.17294 1.25432 1.38258 1.51233 1.53938 2.21487 2.22053 2.74437 3.73499 3.91634 4.06790 4.13361 4.37449 4.45984 4.58643 4.62547 4.68624 4.85285 4.90343 4.92718 5.02588 5.14435 5.18306 5.23330 5.33288 5.47266 5.52928 5.57558 5.67497 5.75550 6.04485 6.14164 6.31328 6.43371 6.74601 6.97576 7.03634 7.08214 8.35842 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.054770 B = 0.003307 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.101474 B = 8463.927939 C = 8515.470019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.033 3.967 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.504 4.504 8 H 0.072 0.928 9 C 0.072 3.928 10 C -0.242 4.242 11 C -0.092 4.092 12 C -0.197 4.197 13 C -0.054 4.054 14 C -0.103 4.103 15 C -0.102 4.102 16 C -0.113 4.113 17 C 0.483 3.517 18 O -0.557 6.557 19 O -0.515 6.515 20 C -0.105 4.105 21 C -0.189 4.189 22 H 0.287 0.713 23 H 0.094 0.906 24 H 0.117 0.883 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.425 0.575 34 H 0.105 0.895 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.138 -12.558 -9.547 15.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.181 4.181 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.191 1.191 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.070 3.930 10 C -0.262 4.262 11 C -0.110 4.110 12 C -0.198 4.198 13 C -0.091 4.091 14 C -0.140 4.140 15 C -0.140 4.140 16 C -0.150 4.150 17 C 0.328 3.672 18 O -0.449 6.449 19 O -0.329 6.329 20 C -0.123 4.123 21 C -0.208 4.208 22 H 0.097 0.903 23 H 0.112 0.888 24 H 0.135 0.865 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.287 0.713 34 H 0.123 0.877 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.371 -12.178 -9.263 15.305 hybrid contribution -0.158 0.408 0.159 0.466 sum -0.529 -11.770 -9.104 14.889 Atomic orbital electron populations 1.69892 1.09003 1.30332 1.36324 1.26755 0.95492 1.04515 0.91307 0.85171 0.79394 0.76256 0.78926 1.18232 1.18843 1.19101 1.19835 0.98244 0.92703 1.42598 0.90969 1.17976 0.92195 0.93115 0.89695 1.21192 1.04381 0.93343 1.07242 1.20736 0.95622 0.96792 0.97831 1.19575 0.99944 0.94551 1.05738 1.20262 0.98189 0.93233 0.97441 1.21496 0.99874 0.95856 0.96821 1.21370 0.99904 0.96882 0.95810 1.21481 1.02076 0.91525 0.99904 1.23920 0.80312 0.85884 0.77105 1.90720 1.31723 1.68349 1.54060 1.84519 1.63179 1.42584 1.42593 1.20829 0.98956 0.92667 0.99886 1.21287 1.00195 0.97131 1.02214 0.90279 0.88819 0.86482 0.91734 0.92287 0.92032 0.91586 0.91691 0.91973 0.85919 0.85736 0.71318 0.87660 0.88425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.45 10.95 21.83 0.24 -44.21 16 2 C 0.03 1.73 5.14 85.26 0.44 2.16 16 3 Si 0.98 38.98 29.59 68.60 2.03 41.01 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 6 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 7 C -0.50 -27.95 9.05 23.46 0.21 -27.74 16 8 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 9 C 0.07 4.00 5.57 -21.29 -0.12 3.88 16 10 C -0.24 -12.08 9.80 22.73 0.22 -11.85 16 11 C -0.09 -3.96 9.67 22.22 0.21 -3.75 16 12 C -0.20 -8.12 5.16 -19.67 -0.10 -8.22 16 13 C -0.05 -1.68 5.33 29.85 0.16 -1.52 16 14 C -0.10 -2.57 5.20 30.59 0.16 -2.41 16 15 C -0.10 -2.14 4.50 30.59 0.14 -2.00 16 16 C -0.11 -1.80 5.81 29.85 0.17 -1.62 16 17 C 0.48 9.05 8.33 71.24 0.59 9.64 16 18 O -0.56 -14.64 16.74 21.97 0.37 -14.27 16 19 O -0.52 -6.87 13.42 -51.31 -0.69 -7.56 16 20 C -0.11 -4.84 9.67 22.22 0.21 -4.62 16 21 C -0.19 -10.11 8.70 22.73 0.20 -9.91 16 22 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 23 H 0.09 4.45 8.06 -2.91 -0.02 4.43 16 24 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 25 H 0.06 1.88 8.08 -2.39 -0.02 1.86 16 26 H 0.06 1.79 8.08 -2.39 -0.02 1.77 16 27 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 30 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 31 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.43 2.25 9.10 -74.06 -0.67 1.57 16 34 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 35 H 0.10 5.50 6.16 -2.91 -0.02 5.48 16 Total: -1.00 -66.28 304.53 4.86 -61.41 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.41 Total: 21.58 kcal Atomic # 6 Polarization: -60.47 SS G_CDS: 2.50 Total: -57.96 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.24 Total: -44.21 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.32 Total: -21.83 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -66.28 4.86 -61.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238628816.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.144 kcal (2) G-P(sol) polarization free energy of solvation -66.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds