Wall clock time and date at job start Mon Mar 30 2020 06:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 C 1.37895 * 126.54212 * 59.68715 * 4 2 1 6 6 C 1.40142 * 125.31210 * 0.02562 * 5 4 2 7 7 H 1.08004 * 119.99309 * 359.97438 * 6 5 4 8 8 C 1.40322 * 120.00438 * 179.97438 * 6 5 4 9 9 N 1.30596 * 119.99780 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00126 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47213 * 89.99832 * 10 8 6 12 12 H 1.48506 * 109.47194 * 209.99902 * 10 8 6 13 13 H 1.48495 * 109.46962 * 329.99749 * 10 8 6 14 14 N 1.32474 * 109.38135 * 179.85757 * 5 4 2 15 15 C 1.33932 * 109.79419 * 0.41612 * 14 5 4 16 16 C 1.38045 * 126.55040 * 240.00130 * 4 2 1 17 17 C 1.38619 * 133.75931 * 359.94037 * 16 4 2 18 18 C 1.38052 * 119.96466 * 180.02562 * 17 16 4 19 19 C 1.38915 * 120.61570 * 0.02562 * 18 17 16 20 20 C 1.37627 * 120.58563 * 359.97438 * 19 18 17 21 21 F 1.35102 * 120.16616 * 179.97438 * 20 19 18 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 0.97011 * 120.00301 * 180.02562 * 9 8 6 30 30 H 1.07994 * 120.01544 * 0.02562 * 17 16 4 31 31 H 1.07996 * 119.68902 * 179.97438 * 18 17 16 32 32 H 1.08003 * 119.71069 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 1.7648 -0.3426 -2.5061 6 6 0.9860 0.7470 -2.9187 7 1 0.5282 1.3924 -2.1837 8 6 0.8011 0.9994 -4.2866 9 7 1.3552 0.2192 -5.1753 10 14 -0.2375 2.4514 -4.8364 11 1 0.6266 3.6498 -4.9859 12 1 -0.8777 2.1371 -6.1390 13 1 -1.2872 2.7216 -3.8214 14 7 2.3753 -1.1969 -3.3139 15 6 3.0267 -2.1177 -2.5917 16 6 2.8151 -1.8175 -1.2270 17 6 3.3823 -2.6178 -0.2476 18 6 4.1520 -3.7061 -0.6067 19 6 4.3666 -4.0101 -1.9451 20 6 3.8150 -3.2318 -2.9372 21 9 4.0296 -3.5349 -4.2361 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.2277 0.3938 -6.1210 30 1 3.2221 -2.3901 0.7958 31 1 4.5921 -4.3264 0.1600 32 1 4.9716 -4.8648 -2.2096 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257737165.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:08 Heat of formation + Delta-G solvation = -5.640421 kcal Electronic energy + Delta-G solvation = -18077.547846 eV Core-core repulsion = 15145.018512 eV Total energy + Delta-G solvation = -2932.529334 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.46351 -42.26204 -37.95345 -36.30921 -35.30010 -32.11226 -30.64514 -29.72804 -28.06343 -27.79950 -23.60928 -23.24694 -22.79140 -20.62982 -18.96379 -18.35769 -17.64610 -16.63258 -16.49098 -16.48960 -16.32134 -15.53190 -15.29299 -14.96453 -14.64368 -13.88899 -13.87657 -13.54701 -13.14543 -13.09394 -12.90340 -12.68898 -12.52648 -12.34885 -12.21758 -12.04365 -11.95540 -11.50806 -11.09717 -10.73005 -9.91866 -9.16177 -8.56237 -8.51165 -6.56465 0.30125 0.81353 1.40029 1.43622 1.56375 2.11617 2.30724 2.34533 3.03685 3.51710 3.66444 3.82876 3.88697 4.14983 4.19299 4.28180 4.45829 4.70913 4.72166 4.78088 4.79655 4.93383 4.93645 5.09572 5.15979 5.36895 5.39386 5.41172 5.60736 5.65370 5.94700 6.09359 6.11836 6.43208 6.74557 7.17924 8.00771 8.40951 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.021258 B = 0.009638 C = 0.006937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.823134 B = 2904.537086 C = 4035.597496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 C -0.160 4.160 4 N -0.531 5.531 5 C 0.398 3.602 6 C -0.454 4.454 7 H 0.117 0.883 8 C 0.025 3.975 9 N -0.770 5.770 10 Si 0.996 3.004 11 H -0.261 1.261 12 H -0.275 1.275 13 H -0.241 1.241 14 N -0.587 5.587 15 C 0.023 3.977 16 C 0.007 3.993 17 C -0.109 4.109 18 C -0.132 4.132 19 C -0.148 4.148 20 C 0.036 3.964 21 F -0.166 7.166 22 H 0.059 0.941 23 H 0.102 0.898 24 H 0.042 0.958 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.282 0.718 30 H 0.142 0.858 31 H 0.168 0.832 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.050 1.449 11.293 11.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.041 3.959 3 C -0.218 4.218 4 N -0.227 5.227 5 C 0.160 3.840 6 C -0.491 4.491 7 H 0.135 0.865 8 C -0.197 4.197 9 N -0.394 5.394 10 Si 0.815 3.185 11 H -0.185 1.185 12 H -0.200 1.200 13 H -0.164 1.164 14 N -0.312 5.312 15 C -0.104 4.104 16 C -0.102 4.102 17 C -0.131 4.131 18 C -0.153 4.153 19 C -0.169 4.169 20 C 0.013 3.987 21 F -0.145 7.145 22 H 0.078 0.922 23 H 0.121 0.879 24 H 0.061 0.939 25 H 0.119 0.881 26 H 0.121 0.879 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.160 0.840 31 H 0.186 0.814 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.092 1.510 10.287 10.454 hybrid contribution -0.150 0.228 -0.445 0.522 sum -1.241 1.738 9.842 10.071 Atomic orbital electron populations 1.22199 0.93601 1.01996 1.04029 1.21288 0.95513 0.93795 0.85329 1.22189 1.00602 0.94974 1.04019 1.46007 1.45168 1.24228 1.07284 1.20731 0.92352 0.93716 0.77199 1.19158 1.27662 1.08587 0.93676 0.86492 1.27095 0.96320 1.00229 0.96101 1.70168 1.32180 1.34170 1.02852 0.85000 0.78407 0.76462 0.78638 1.18530 1.19972 1.16385 1.71280 1.21181 1.08550 1.30174 1.19927 1.00833 0.97409 0.92192 1.19104 1.01843 0.93604 0.95685 1.20152 1.00063 0.95594 0.97280 1.20765 1.01456 0.98273 0.94765 1.20865 1.03051 1.00703 0.92294 1.17451 1.05271 0.97835 0.78120 1.91312 1.93888 1.92903 1.36377 0.92163 0.87917 0.93911 0.88087 0.87903 0.93903 0.92182 0.90787 0.84039 0.81417 0.83183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.81 9.19 71.98 0.66 -4.15 16 2 C 0.14 4.75 3.44 44.99 0.15 4.90 16 3 C -0.16 -4.78 9.20 71.98 0.66 -4.12 16 4 N -0.53 -24.37 2.71 -490.62 -1.33 -25.69 16 5 C 0.40 21.84 7.02 133.66 0.94 22.78 16 6 C -0.45 -23.01 7.45 23.24 0.17 -22.84 16 7 H 0.12 5.15 4.40 -2.91 -0.01 5.14 16 8 C 0.03 1.26 5.50 85.38 0.47 1.73 16 9 N -0.77 -43.67 11.85 21.89 0.26 -43.41 16 10 Si 1.00 36.69 29.56 68.60 2.03 38.72 16 11 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 12 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 13 H -0.24 -8.02 7.11 99.48 0.71 -7.32 16 14 N -0.59 -36.25 9.33 -186.35 -1.74 -37.99 16 15 C 0.02 1.30 7.19 40.21 0.29 1.59 16 16 C 0.01 0.33 6.88 39.01 0.27 0.60 16 17 C -0.11 -3.97 9.87 22.32 0.22 -3.75 16 18 C -0.13 -4.30 10.03 22.39 0.22 -4.07 16 19 C -0.15 -5.67 9.99 22.29 0.22 -5.44 16 20 C 0.04 1.79 7.37 22.75 0.17 1.95 16 21 F -0.17 -8.79 17.28 44.97 0.78 -8.02 16 22 H 0.06 2.07 5.50 -2.39 -0.01 2.06 16 23 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.04 1.35 8.14 -2.38 -0.02 1.34 16 25 H 0.10 2.82 7.59 -2.39 -0.02 2.81 16 26 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 2.05 5.56 -2.39 -0.01 2.04 16 29 H 0.28 14.56 8.29 -92.70 -0.77 13.79 16 30 H 0.14 4.01 7.73 -2.91 -0.02 3.98 16 31 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 32 H 0.15 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -72.89 272.91 5.60 -67.29 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 1.15 Total: 19.93 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 4.45 Total: -10.83 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -2.81 Total: -107.09 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 0.78 Total: -8.02 kcal Atomic # 14 Polarization: 36.69 SS G_CDS: 2.03 Total: 38.72 kcal Total: -72.89 5.60 -67.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257737165.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.653 kcal (2) G-P(sol) polarization free energy of solvation -72.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds