Wall clock time and date at job start Mon Mar 30 2020 06:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36011 * 126.35120 * 2 1 4 4 C 1.50696 * 124.95124 * 359.97438 * 3 2 1 5 5 C 1.53008 * 109.47058 * 89.99729 * 4 3 2 6 6 C 1.50696 * 109.47058 * 180.02562 * 5 4 3 7 7 H 1.08007 * 119.99848 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00171 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99737 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00201 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46730 * 90.00065 * 10 8 6 12 12 H 1.48495 * 109.47086 * 209.99832 * 10 8 6 13 13 H 1.48496 * 109.47087 * 330.00099 * 10 8 6 14 14 N 1.30116 * 110.09886 * 179.75695 * 3 2 1 15 15 C 1.35789 * 109.65360 * 0.36755 * 14 3 2 16 16 C 1.39778 * 133.54055 * 179.97438 * 15 14 3 17 17 C 1.37766 * 119.74893 * 179.74574 * 16 15 14 18 18 F 1.35102 * 119.76470 * 179.97438 * 17 16 15 19 19 C 1.38987 * 120.47573 * 359.93104 * 17 16 15 20 20 C 1.37815 * 120.43204 * 0.03243 * 19 17 16 21 21 C 1.38172 * 126.34748 * 179.97438 * 2 1 3 22 22 H 1.09003 * 109.47566 * 269.99930 * 1 2 3 23 23 H 1.09001 * 109.47185 * 29.99624 * 1 2 3 24 24 H 1.08999 * 109.47465 * 149.99423 * 1 2 3 25 25 H 1.08999 * 109.47199 * 209.99382 * 4 3 2 26 26 H 1.08997 * 109.47342 * 329.99633 * 4 3 2 27 27 H 1.08999 * 109.46832 * 299.99878 * 5 4 3 28 28 H 1.09005 * 109.46973 * 60.00056 * 5 4 3 29 29 H 0.97005 * 120.00065 * 179.97438 * 9 8 6 30 30 H 1.08002 * 120.12325 * 359.67461 * 16 15 14 31 31 H 1.08001 * 119.78423 * 180.02562 * 19 17 16 32 32 H 1.08004 * 120.06886 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0954 0.0000 4 6 1.7881 2.5229 -0.0006 5 6 1.6240 3.0063 1.4418 6 6 1.1403 4.4335 1.4413 7 1 0.9676 4.9448 0.5057 8 6 0.9192 5.0870 2.6351 9 7 1.1300 4.4646 3.7742 10 14 0.3203 6.8564 2.6344 11 1 -1.1645 6.8763 2.6343 12 1 0.8246 7.5501 3.8466 13 1 0.8247 7.5492 1.4217 14 7 3.5203 0.7313 0.0052 15 6 3.6009 -0.6242 0.0007 16 6 4.6695 -1.5253 0.0025 17 6 4.4211 -2.8803 0.0017 18 9 5.4536 -3.7515 0.0030 19 6 3.1157 -3.3577 0.0006 20 6 2.0520 -2.4814 -0.0005 21 6 2.2839 -1.1129 0.0005 22 1 -0.3634 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8899 -0.5139 25 1 2.5149 3.1522 -0.5142 26 1 0.8288 2.5816 -0.5148 27 1 0.8973 2.3770 1.9555 28 1 2.5834 2.9476 1.9561 29 1 0.9748 4.9244 4.6141 30 1 5.6861 -1.1605 0.0034 31 1 2.9338 -4.4222 0.0004 32 1 1.0400 -2.8587 -0.0018 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259349311.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:58 Heat of formation + Delta-G solvation = 12.989481 kcal Electronic energy + Delta-G solvation = -17055.394736 eV Core-core repulsion = 14123.673256 eV Total energy + Delta-G solvation = -2931.721480 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.76071 -41.96048 -37.10680 -34.06376 -33.90146 -31.60581 -30.28682 -28.57571 -26.75624 -25.62452 -22.65332 -22.08024 -21.26200 -19.55725 -17.83747 -17.06621 -16.59911 -16.07245 -15.75055 -15.24082 -15.01711 -14.51904 -14.18912 -13.55473 -13.21323 -13.05413 -12.91599 -12.75448 -12.46515 -12.27675 -11.53087 -11.42774 -11.01887 -10.99781 -10.64146 -10.21044 -10.10632 -9.75672 -9.66080 -9.27560 -8.45656 -8.00053 -7.99353 -6.09731 -4.14395 0.94945 1.41002 2.78484 2.99395 3.26505 3.33871 3.36835 3.84287 4.12749 4.37806 4.47921 4.78871 4.82001 4.94239 5.20919 5.26472 5.27114 5.42657 5.54039 5.57689 5.67290 6.01080 6.04559 6.16909 6.32521 6.50808 6.58197 6.67023 6.93978 7.33583 7.49288 7.61787 7.86873 8.20262 8.23828 8.91582 9.50618 11.01315 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.043070 B = 0.004516 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.947421 B = 6198.137081 C = 6459.980994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.492 5.492 3 C 0.327 3.673 4 C -0.045 4.045 5 C 0.032 3.968 6 C -0.526 4.526 7 H 0.059 0.941 8 C 0.060 3.940 9 N -0.892 5.892 10 Si 0.895 3.105 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.272 1.272 14 N -0.504 5.504 15 C 0.080 3.920 16 C -0.106 4.106 17 C 0.084 3.916 18 F -0.143 7.143 19 C -0.149 4.149 20 C -0.075 4.075 21 C 0.027 3.973 22 H 0.079 0.921 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.016 0.984 28 H 0.027 0.973 29 H 0.262 0.738 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.981 -13.441 -8.236 15.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.181 5.181 3 C 0.063 3.937 4 C -0.084 4.084 5 C -0.006 4.006 6 C -0.564 4.564 7 H 0.078 0.922 8 C -0.142 4.142 9 N -0.530 5.530 10 Si 0.723 3.277 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.197 1.197 14 N -0.223 5.223 15 C -0.040 4.040 16 C -0.127 4.127 17 C 0.062 3.938 18 F -0.121 7.121 19 C -0.169 4.169 20 C -0.096 4.096 21 C -0.083 4.083 22 H 0.097 0.903 23 H 0.112 0.888 24 H 0.097 0.903 25 H 0.110 0.890 26 H 0.092 0.908 27 H 0.034 0.966 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.405 -12.917 -8.043 15.222 hybrid contribution -0.903 0.225 0.236 0.960 sum -1.308 -12.692 -7.808 14.958 Atomic orbital electron populations 1.22002 0.76017 1.04263 1.04045 1.45328 1.07381 1.04921 1.60423 1.24550 0.84677 0.91718 0.92803 1.20683 1.00567 0.83531 1.03634 1.19073 0.98009 0.96071 0.87455 1.21123 1.45378 0.97287 0.92618 0.92240 1.25009 0.95390 0.98264 0.95541 1.69969 1.48471 1.37189 0.97384 0.86543 0.78868 0.84599 0.77714 1.20640 1.21150 1.19700 1.70575 1.17750 1.09444 1.24568 1.18764 0.91195 0.90895 1.03106 1.20004 0.99021 0.89816 1.03819 1.17110 0.84077 0.86466 1.06119 1.91471 1.57570 1.68706 1.94395 1.20676 0.90301 1.00189 1.05730 1.19669 0.99168 0.88550 1.02224 1.18911 0.91674 0.89446 1.08238 0.90274 0.88839 0.90257 0.88988 0.90771 0.96597 0.95483 0.92802 0.84304 0.84448 0.85361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 10.96 59.85 0.66 1.59 16 2 N -0.49 -7.97 3.21 -118.49 -0.38 -8.35 16 3 C 0.33 6.26 7.11 -154.85 -1.10 5.16 16 4 C -0.05 -0.88 5.45 -27.88 -0.15 -1.03 16 5 C 0.03 0.79 4.96 -27.88 -0.14 0.66 16 6 C -0.53 -14.06 9.11 -34.44 -0.31 -14.37 16 7 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 10 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 14 N -0.50 -10.35 11.27 -8.24 -0.09 -10.44 16 15 C 0.08 1.46 7.23 -84.70 -0.61 0.85 16 16 C -0.11 -1.67 10.07 -39.18 -0.39 -2.07 16 17 C 0.08 1.17 7.28 -39.48 -0.29 0.88 16 18 F -0.14 -1.94 17.26 2.25 0.04 -1.90 16 19 C -0.15 -1.79 10.00 -39.46 -0.39 -2.19 16 20 C -0.08 -0.95 10.04 -39.53 -0.40 -1.35 16 21 C 0.03 0.43 6.87 -83.96 -0.58 -0.15 16 22 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.09 1.02 7.00 -51.93 -0.36 0.66 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 26 H 0.07 1.26 7.01 -51.93 -0.36 0.90 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 LS Contribution 285.35 15.07 4.30 4.30 Total: -1.00 -31.33 285.35 -7.88 -39.21 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -3.65 Total: -2.78 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -3.81 Total: -10.46 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.26 Total: -44.17 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.33 -7.88 -39.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259349311.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.199 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds