Wall clock time and date at job start Mon Mar 30 2020 06:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36011 * 126.35120 * 2 1 4 4 C 1.50696 * 124.95124 * 359.97438 * 3 2 1 5 5 C 1.53008 * 109.47058 * 89.99729 * 4 3 2 6 6 C 1.50696 * 109.47058 * 180.02562 * 5 4 3 7 7 H 1.08007 * 119.99848 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00171 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99737 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00201 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46730 * 90.00065 * 10 8 6 12 12 H 1.48495 * 109.47086 * 209.99832 * 10 8 6 13 13 H 1.48496 * 109.47087 * 330.00099 * 10 8 6 14 14 N 1.30116 * 110.09886 * 179.75695 * 3 2 1 15 15 C 1.35789 * 109.65360 * 0.36755 * 14 3 2 16 16 C 1.39778 * 133.54055 * 179.97438 * 15 14 3 17 17 C 1.37766 * 119.74893 * 179.74574 * 16 15 14 18 18 F 1.35102 * 119.76470 * 179.97438 * 17 16 15 19 19 C 1.38987 * 120.47573 * 359.93104 * 17 16 15 20 20 C 1.37815 * 120.43204 * 0.03243 * 19 17 16 21 21 C 1.38172 * 126.34748 * 179.97438 * 2 1 3 22 22 H 1.09003 * 109.47566 * 269.99930 * 1 2 3 23 23 H 1.09001 * 109.47185 * 29.99624 * 1 2 3 24 24 H 1.08999 * 109.47465 * 149.99423 * 1 2 3 25 25 H 1.08999 * 109.47199 * 209.99382 * 4 3 2 26 26 H 1.08997 * 109.47342 * 329.99633 * 4 3 2 27 27 H 1.08999 * 109.46832 * 299.99878 * 5 4 3 28 28 H 1.09005 * 109.46973 * 60.00056 * 5 4 3 29 29 H 0.97005 * 120.00065 * 179.97438 * 9 8 6 30 30 H 1.08002 * 120.12325 * 359.67461 * 16 15 14 31 31 H 1.08001 * 119.78423 * 180.02562 * 19 17 16 32 32 H 1.08004 * 120.06886 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0954 0.0000 4 6 1.7881 2.5229 -0.0006 5 6 1.6240 3.0063 1.4418 6 6 1.1403 4.4335 1.4413 7 1 0.9676 4.9448 0.5057 8 6 0.9192 5.0870 2.6351 9 7 1.1300 4.4646 3.7742 10 14 0.3203 6.8564 2.6344 11 1 -1.1645 6.8763 2.6343 12 1 0.8246 7.5501 3.8466 13 1 0.8247 7.5492 1.4217 14 7 3.5203 0.7313 0.0052 15 6 3.6009 -0.6242 0.0007 16 6 4.6695 -1.5253 0.0025 17 6 4.4211 -2.8803 0.0017 18 9 5.4536 -3.7515 0.0030 19 6 3.1157 -3.3577 0.0006 20 6 2.0520 -2.4814 -0.0005 21 6 2.2839 -1.1129 0.0005 22 1 -0.3634 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8899 -0.5139 25 1 2.5149 3.1522 -0.5142 26 1 0.8288 2.5816 -0.5148 27 1 0.8973 2.3770 1.9555 28 1 2.5834 2.9476 1.9561 29 1 0.9748 4.9244 4.6141 30 1 5.6861 -1.1605 0.0034 31 1 2.9338 -4.4222 0.0004 32 1 1.0400 -2.8587 -0.0018 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259349311.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:57 Heat of formation + Delta-G solvation = -4.889155 kcal Electronic energy + Delta-G solvation = -17056.170012 eV Core-core repulsion = 14123.673256 eV Total energy + Delta-G solvation = -2932.496756 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.86239 -43.20764 -38.26806 -35.81101 -35.26158 -33.44304 -31.38572 -29.99514 -27.87055 -27.34628 -24.22169 -23.28183 -22.73114 -20.92424 -19.01769 -18.61749 -18.11191 -17.31370 -17.00726 -16.52478 -16.29913 -16.18834 -15.32057 -14.99638 -14.70847 -14.31068 -14.15042 -14.00818 -13.90723 -13.56003 -13.14186 -12.83950 -12.60415 -12.51039 -12.25071 -11.93604 -11.57818 -11.38119 -11.31583 -10.98403 -10.57145 -9.25592 -9.15044 -8.20487 -6.33014 -0.20673 0.27265 1.43475 1.45518 1.56118 1.61711 1.72294 2.42252 2.64370 2.93102 3.14136 3.41372 3.52259 3.85067 3.95436 4.18750 4.21628 4.26679 4.38271 4.59693 4.62875 4.66392 4.73763 4.91218 4.99628 5.09514 5.30450 5.43022 5.45362 5.56319 5.78105 5.83032 6.09102 6.17838 6.83200 6.87274 7.37383 8.91564 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.043070 B = 0.004516 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.947421 B = 6198.137081 C = 6459.980994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.486 5.486 3 C 0.301 3.699 4 C -0.028 4.028 5 C 0.043 3.957 6 C -0.540 4.540 7 H 0.073 0.927 8 C 0.002 3.998 9 N -0.935 5.935 10 Si 0.968 3.032 11 H -0.268 1.268 12 H -0.288 1.288 13 H -0.261 1.261 14 N -0.544 5.544 15 C 0.038 3.962 16 C -0.126 4.126 17 C 0.087 3.913 18 F -0.140 7.140 19 C -0.131 4.131 20 C -0.065 4.065 21 C 0.019 3.981 22 H 0.075 0.925 23 H 0.101 0.899 24 H 0.119 0.881 25 H 0.087 0.913 26 H 0.103 0.897 27 H -0.003 1.003 28 H -0.019 1.019 29 H 0.263 0.737 30 H 0.136 0.864 31 H 0.179 0.821 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.809 -14.844 -9.408 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.175 5.175 3 C 0.036 3.964 4 C -0.067 4.067 5 C 0.005 3.995 6 C -0.577 4.577 7 H 0.091 0.909 8 C -0.196 4.196 9 N -0.575 5.575 10 Si 0.792 3.208 11 H -0.193 1.193 12 H -0.214 1.214 13 H -0.185 1.185 14 N -0.264 5.264 15 C -0.081 4.081 16 C -0.147 4.147 17 C 0.065 3.935 18 F -0.119 7.119 19 C -0.151 4.151 20 C -0.085 4.085 21 C -0.091 4.091 22 H 0.094 0.906 23 H 0.119 0.881 24 H 0.137 0.863 25 H 0.106 0.894 26 H 0.121 0.879 27 H 0.016 0.984 28 H 0.000 1.000 29 H 0.072 0.928 30 H 0.154 0.846 31 H 0.196 0.804 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.253 -14.333 -9.237 17.200 hybrid contribution -0.267 0.498 0.605 0.828 sum -2.520 -13.835 -8.633 16.501 Atomic orbital electron populations 1.22355 0.73501 1.06690 1.04572 1.45470 1.08757 1.04066 1.59178 1.24198 0.85111 0.92129 0.94969 1.20343 1.01988 0.84238 1.00164 1.18823 0.94809 0.95586 0.90290 1.21601 1.44680 0.98237 0.93224 0.90872 1.25986 0.95526 1.03015 0.95112 1.70121 1.49980 1.39262 0.98141 0.85398 0.78751 0.78791 0.77819 1.19345 1.21410 1.18457 1.70414 1.19144 1.11516 1.25370 1.19092 0.93200 0.90348 1.05448 1.20114 0.98679 0.90770 1.05095 1.17265 0.85141 0.85712 1.05365 1.91482 1.57771 1.68340 1.94285 1.21152 0.88846 1.02182 1.02940 1.20157 1.01428 0.86663 1.00279 1.19321 0.90701 0.90786 1.08282 0.90605 0.88092 0.86296 0.89449 0.87918 0.98432 1.00012 0.92801 0.84648 0.80356 0.81139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.48 10.96 127.77 1.40 2.88 16 2 N -0.49 -15.37 3.21 -528.81 -1.70 -17.07 16 3 C 0.30 11.83 7.11 137.93 0.98 12.81 16 4 C -0.03 -1.14 5.45 29.85 0.16 -0.97 16 5 C 0.04 2.23 4.96 29.85 0.15 2.37 16 6 C -0.54 -29.20 9.11 25.60 0.23 -28.97 16 7 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 8 C 0.00 0.09 5.46 84.66 0.46 0.55 16 9 N -0.94 -56.28 13.29 21.45 0.28 -55.99 16 10 Si 0.97 42.74 29.54 68.60 2.03 44.77 16 11 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 12 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 13 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 14 N -0.54 -23.38 11.27 -179.98 -2.03 -25.41 16 15 C 0.04 1.42 7.23 39.45 0.29 1.71 16 16 C -0.13 -4.03 10.07 22.53 0.23 -3.80 16 17 C 0.09 2.26 7.28 22.34 0.16 2.42 16 18 F -0.14 -3.55 17.26 44.97 0.78 -2.77 16 19 C -0.13 -2.64 10.00 22.35 0.22 -2.42 16 20 C -0.07 -1.39 10.04 22.30 0.22 -1.17 16 21 C 0.02 0.57 6.87 38.82 0.27 0.84 16 22 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.10 1.99 7.00 -2.39 -0.02 1.97 16 24 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 26 H 0.10 3.43 7.01 -2.39 -0.02 3.41 16 27 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 29 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 30 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 31 H 0.18 2.19 8.06 -2.91 -0.02 2.16 16 32 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -71.16 285.35 5.26 -65.90 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 1.13 Total: 4.32 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 4.78 Total: -13.75 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -3.44 Total: -98.47 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.78 Total: -2.77 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -71.16 5.26 -65.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259349311.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.006 kcal (2) G-P(sol) polarization free energy of solvation -71.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds