Wall clock time and date at job start Mon Mar 30 2020 06:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36795 * 125.06968 * 2 1 4 4 C 1.34252 * 109.92065 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.49526 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47029 * 220.02794 * 5 4 3 7 7 N 1.46893 * 109.47183 * 340.02896 * 5 4 3 8 8 C 1.50701 * 109.47146 * 100.02500 * 5 4 3 9 9 H 1.08002 * 119.99520 * 0.02562 * 8 5 4 10 10 C 1.37877 * 120.00169 * 179.97438 * 8 5 4 11 11 N 1.31516 * 119.99739 * 0.02562 * 10 8 5 12 12 Si 1.86799 * 120.00105 * 180.02562 * 10 8 5 13 13 H 1.48503 * 109.47027 * 59.99938 * 12 10 8 14 14 H 1.48497 * 109.46939 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47011 * 300.00141 * 12 10 8 16 16 C 1.46473 * 107.01099 * 0.02562 * 4 3 2 17 17 C 1.39711 * 134.01335 * 179.97438 * 16 4 3 18 18 C 1.36600 * 119.80870 * 179.97438 * 17 16 4 19 19 C 1.38838 * 120.54638 * 359.97438 * 18 17 16 20 20 C 1.37938 * 120.63683 * 0.04002 * 19 18 17 21 21 F 1.35096 * 120.12804 * 179.97438 * 20 19 18 22 22 C 1.37772 * 125.07500 * 180.02562 * 2 1 3 23 23 H 1.08996 * 109.47162 * 89.97332 * 1 2 3 24 24 H 1.09000 * 109.47390 * 209.97407 * 1 2 3 25 25 H 1.09004 * 109.47395 * 329.97561 * 1 2 3 26 26 H 1.08003 * 125.04117 * 359.75704 * 3 2 1 27 27 H 1.00907 * 110.99826 * 296.04337 * 7 5 4 28 28 H 1.00896 * 111.00351 * 59.99728 * 7 5 4 29 29 H 0.97004 * 119.99998 * 180.02562 * 11 10 8 30 30 H 1.08004 * 120.09153 * 0.02562 * 17 16 4 31 31 H 1.08000 * 119.72304 * 179.97438 * 18 17 16 32 32 H 1.08000 * 119.67799 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2509 1.1196 0.0000 4 6 3.5468 0.7688 -0.0006 5 6 4.7286 1.7039 -0.0002 6 1 5.5016 1.3127 -0.6616 7 7 4.3047 3.0288 -0.4722 8 6 5.2763 1.8207 1.3989 9 1 4.8150 1.2722 2.2068 10 6 6.3669 2.6269 1.6472 11 7 6.9289 3.2944 0.6631 12 14 7.0463 2.7711 3.3813 13 1 7.4744 1.4315 3.8581 14 1 8.2107 3.6927 3.3816 15 1 5.9934 3.3042 4.2826 16 6 3.5944 -0.6952 -0.0016 17 6 4.6302 -1.6328 -0.0029 18 6 4.3382 -2.9672 -0.0031 19 6 3.0193 -3.4009 -0.0014 20 6 1.9808 -2.4931 -0.0003 21 9 0.7012 -2.9265 0.0008 22 6 2.2567 -1.1275 -0.0005 23 1 -0.3633 0.0005 -1.0276 24 1 -0.3634 -0.8902 0.5134 25 1 -0.3634 0.8898 0.5142 26 1 1.8835 2.1352 -0.0037 27 1 3.9934 2.9885 -1.4312 28 1 3.5879 3.4131 0.1248 29 1 7.6964 3.8613 0.8377 30 1 5.6588 -1.3034 -0.0030 31 1 5.1400 -3.6908 -0.0046 32 1 2.8045 -4.4594 -0.0011 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259498904.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:06 Heat of formation + Delta-G solvation = 20.524228 kcal Electronic energy + Delta-G solvation = -17699.539650 eV Core-core repulsion = 14768.144901 eV Total energy + Delta-G solvation = -2931.394749 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.61781 -40.80771 -36.69282 -34.85905 -32.04079 -30.86402 -29.71861 -28.34154 -26.52323 -25.23770 -22.50198 -21.97094 -21.27946 -18.85322 -16.86553 -16.54120 -16.34377 -15.62063 -15.61742 -14.84552 -14.58487 -14.45452 -14.36345 -13.99176 -13.05052 -12.85049 -12.55459 -12.49826 -12.19749 -11.87345 -11.34432 -11.10854 -10.89653 -10.89382 -10.67395 -10.61979 -9.85724 -9.34206 -8.72727 -8.36779 -7.86926 -7.13692 -6.91781 -5.81746 -3.96101 1.37896 1.87274 3.11428 3.21614 3.38283 3.42930 3.46954 4.20927 4.53349 4.55503 4.90819 4.96208 5.26463 5.27291 5.30017 5.41825 5.49697 5.67672 5.83275 5.96383 6.18406 6.36036 6.42293 6.56956 6.65161 6.95062 7.15294 7.27339 7.47214 7.65170 7.70683 7.97027 8.28697 8.68869 9.04379 9.20159 9.72094 11.21858 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.026520 B = 0.007026 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.551797 B = 3984.327522 C = 4488.241462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.486 5.486 3 C 0.013 3.987 4 C -0.135 4.135 5 C 0.285 3.715 6 H 0.048 0.952 7 N -0.810 5.810 8 C -0.524 4.524 9 H 0.051 0.949 10 C 0.083 3.917 11 N -0.849 5.849 12 Si 0.882 3.118 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.279 1.279 16 C -0.074 4.074 17 C -0.054 4.054 18 C -0.143 4.143 19 C -0.137 4.137 20 C 0.068 3.932 21 F -0.153 7.153 22 C 0.062 3.938 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.161 0.839 27 H 0.298 0.702 28 H 0.315 0.685 29 H 0.255 0.745 30 H 0.134 0.866 31 H 0.126 0.874 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.976 -8.601 -2.516 13.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.171 5.171 3 C -0.109 4.109 4 C -0.144 4.144 5 C 0.174 3.826 6 H 0.065 0.935 7 N -0.335 5.335 8 C -0.563 4.563 9 H 0.070 0.930 10 C -0.123 4.123 11 N -0.484 5.484 12 Si 0.710 3.290 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.205 1.205 16 C -0.081 4.081 17 C -0.072 4.072 18 C -0.162 4.162 19 C -0.157 4.157 20 C 0.047 3.953 21 F -0.132 7.132 22 C -0.045 4.045 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.178 0.822 27 H 0.108 0.892 28 H 0.127 0.873 29 H 0.065 0.935 30 H 0.152 0.848 31 H 0.144 0.856 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.465 -8.165 -2.445 12.737 hybrid contribution -1.039 -0.404 0.963 1.473 sum -10.504 -8.569 -1.483 13.636 Atomic orbital electron populations 1.21892 0.77838 1.03841 1.02440 1.43590 1.05278 1.03974 1.64249 1.21459 0.90206 0.90288 1.08954 1.22517 0.96226 0.92440 1.03198 1.17613 0.86756 0.81617 0.96575 0.93474 1.59190 1.44663 1.26694 1.02967 1.20790 1.13948 1.28913 0.92689 0.93033 1.24936 0.96240 0.95096 0.96028 1.70092 1.20745 1.27084 1.30494 0.86859 0.78476 0.77832 0.85853 1.20368 1.21405 1.20504 1.19138 0.90324 0.94113 1.04510 1.20524 0.99234 0.91516 0.95968 1.20377 0.95147 0.95685 1.05039 1.20666 0.91933 0.98398 1.04695 1.16615 0.78667 0.88867 1.11186 1.91389 1.36644 1.90310 1.94863 1.18245 0.91864 0.86729 1.07680 0.91893 0.90378 0.90205 0.82172 0.89198 0.87307 0.93468 0.84829 0.85564 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.02 10.83 59.85 0.65 1.66 16 2 N -0.49 -8.27 3.18 -121.76 -0.39 -8.66 16 3 C 0.01 0.23 10.53 -16.74 -0.18 0.06 16 4 C -0.14 -2.87 5.39 -102.71 -0.55 -3.42 16 5 C 0.28 6.91 3.13 -70.02 -0.22 6.69 16 6 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 7 N -0.81 -18.34 8.23 -6.65 -0.05 -18.40 16 8 C -0.52 -14.21 8.71 -34.44 -0.30 -14.51 16 9 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 10 C 0.08 2.30 5.39 -17.82 -0.10 2.20 16 11 N -0.85 -24.41 12.77 55.43 0.71 -23.70 16 12 Si 0.88 21.28 29.54 -169.99 -5.02 16.26 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 C -0.07 -1.50 6.35 -105.15 -0.67 -2.17 16 17 C -0.05 -0.98 10.05 -39.62 -0.40 -1.38 16 18 C -0.14 -2.17 9.97 -39.95 -0.40 -2.56 16 19 C -0.14 -2.04 9.99 -39.47 -0.39 -2.44 16 20 C 0.07 1.15 7.32 -39.29 -0.29 0.86 16 21 F -0.15 -2.42 15.83 2.25 0.04 -2.38 16 22 C 0.06 1.16 6.82 -83.91 -0.57 0.59 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.08 0.94 6.96 -51.93 -0.36 0.58 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.16 2.54 7.31 -52.48 -0.38 2.16 16 27 H 0.30 6.00 9.06 -39.29 -0.36 5.64 16 28 H 0.32 6.73 8.00 -39.29 -0.31 6.41 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.13 2.42 8.06 -52.48 -0.42 2.00 16 31 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 281.34 15.07 4.24 4.24 Total: -1.00 -30.48 281.34 -7.39 -37.86 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -3.49 Total: 9.19 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -3.42 Total: -14.41 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.27 Total: -50.75 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.48 -7.39 -37.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259498904.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.389 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds