Wall clock time and date at job start Mon Mar 30 2020 06:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36795 * 125.06968 * 2 1 4 4 C 1.34252 * 109.92065 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.49526 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47029 * 220.02794 * 5 4 3 7 7 N 1.46893 * 109.47183 * 340.02896 * 5 4 3 8 8 C 1.50701 * 109.47146 * 100.02500 * 5 4 3 9 9 H 1.08002 * 119.99520 * 0.02562 * 8 5 4 10 10 C 1.37877 * 120.00169 * 179.97438 * 8 5 4 11 11 N 1.31516 * 119.99739 * 0.02562 * 10 8 5 12 12 Si 1.86799 * 120.00105 * 180.02562 * 10 8 5 13 13 H 1.48503 * 109.47027 * 59.99938 * 12 10 8 14 14 H 1.48497 * 109.46939 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47011 * 300.00141 * 12 10 8 16 16 C 1.46473 * 107.01099 * 0.02562 * 4 3 2 17 17 C 1.39711 * 134.01335 * 179.97438 * 16 4 3 18 18 C 1.36600 * 119.80870 * 179.97438 * 17 16 4 19 19 C 1.38838 * 120.54638 * 359.97438 * 18 17 16 20 20 C 1.37938 * 120.63683 * 0.04002 * 19 18 17 21 21 F 1.35096 * 120.12804 * 179.97438 * 20 19 18 22 22 C 1.37772 * 125.07500 * 180.02562 * 2 1 3 23 23 H 1.08996 * 109.47162 * 89.97332 * 1 2 3 24 24 H 1.09000 * 109.47390 * 209.97407 * 1 2 3 25 25 H 1.09004 * 109.47395 * 329.97561 * 1 2 3 26 26 H 1.08003 * 125.04117 * 359.75704 * 3 2 1 27 27 H 1.00907 * 110.99826 * 296.04337 * 7 5 4 28 28 H 1.00896 * 111.00351 * 59.99728 * 7 5 4 29 29 H 0.97004 * 119.99998 * 180.02562 * 11 10 8 30 30 H 1.08004 * 120.09153 * 0.02562 * 17 16 4 31 31 H 1.08000 * 119.72304 * 179.97438 * 18 17 16 32 32 H 1.08000 * 119.67799 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2509 1.1196 0.0000 4 6 3.5468 0.7688 -0.0006 5 6 4.7286 1.7039 -0.0002 6 1 5.5016 1.3127 -0.6616 7 7 4.3047 3.0288 -0.4722 8 6 5.2763 1.8207 1.3989 9 1 4.8150 1.2722 2.2068 10 6 6.3669 2.6269 1.6472 11 7 6.9289 3.2944 0.6631 12 14 7.0463 2.7711 3.3813 13 1 7.4744 1.4315 3.8581 14 1 8.2107 3.6927 3.3816 15 1 5.9934 3.3042 4.2826 16 6 3.5944 -0.6952 -0.0016 17 6 4.6302 -1.6328 -0.0029 18 6 4.3382 -2.9672 -0.0031 19 6 3.0193 -3.4009 -0.0014 20 6 1.9808 -2.4931 -0.0003 21 9 0.7012 -2.9265 0.0008 22 6 2.2567 -1.1275 -0.0005 23 1 -0.3633 0.0005 -1.0276 24 1 -0.3634 -0.8902 0.5134 25 1 -0.3634 0.8898 0.5142 26 1 1.8835 2.1352 -0.0037 27 1 3.9934 2.9885 -1.4312 28 1 3.5879 3.4131 0.1248 29 1 7.6964 3.8613 0.8377 30 1 5.6588 -1.3034 -0.0030 31 1 5.1400 -3.6908 -0.0046 32 1 2.8045 -4.4594 -0.0011 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259498904.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:05 Heat of formation + Delta-G solvation = 1.571451 kcal Electronic energy + Delta-G solvation = -17700.361504 eV Core-core repulsion = 14768.144901 eV Total energy + Delta-G solvation = -2932.216603 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.87063 -42.16648 -37.98288 -36.63175 -33.85827 -32.45306 -30.99008 -29.69756 -28.30405 -26.76115 -24.08231 -23.45007 -22.62329 -20.33778 -18.44710 -18.19028 -17.80981 -16.93132 -16.88910 -16.45188 -16.22482 -15.86722 -15.66677 -15.60578 -14.61104 -14.31626 -13.93908 -13.87826 -13.60157 -13.29828 -12.95991 -12.70181 -12.65152 -12.41009 -12.16893 -12.11692 -11.78006 -11.28924 -10.51566 -10.19441 -9.21099 -8.90070 -8.36856 -7.89292 -6.12093 0.04364 0.57030 1.45214 1.45696 1.53071 1.77266 1.87732 2.51566 2.85810 3.25577 3.30974 3.70806 3.87264 3.97302 4.06662 4.36539 4.41749 4.49330 4.52588 4.59970 4.73729 4.89968 4.98659 5.15099 5.28335 5.54806 5.62954 5.79906 5.85011 5.88275 6.23253 6.26461 6.41882 6.75501 7.17604 7.34254 7.59679 9.10797 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.026520 B = 0.007026 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.551797 B = 3984.327522 C = 4488.241462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.485 5.485 3 C 0.034 3.966 4 C -0.181 4.181 5 C 0.296 3.704 6 H 0.006 0.994 7 N -0.819 5.819 8 C -0.532 4.532 9 H 0.038 0.962 10 C 0.037 3.963 11 N -0.881 5.881 12 Si 0.942 3.058 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.276 1.276 16 C -0.105 4.105 17 C -0.084 4.084 18 C -0.126 4.126 19 C -0.127 4.127 20 C 0.064 3.936 21 F -0.146 7.146 22 C 0.045 3.955 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.103 0.897 26 H 0.183 0.817 27 H 0.312 0.688 28 H 0.323 0.677 29 H 0.255 0.745 30 H 0.118 0.882 31 H 0.161 0.839 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.574 -9.948 -1.981 15.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.169 5.169 3 C -0.090 4.090 4 C -0.190 4.190 5 C 0.186 3.814 6 H 0.024 0.976 7 N -0.345 5.345 8 C -0.571 4.571 9 H 0.056 0.944 10 C -0.166 4.166 11 N -0.517 5.517 12 Si 0.768 3.232 13 H -0.201 1.201 14 H -0.209 1.209 15 H -0.201 1.201 16 C -0.112 4.112 17 C -0.103 4.103 18 C -0.145 4.145 19 C -0.147 4.147 20 C 0.042 3.958 21 F -0.125 7.125 22 C -0.063 4.063 23 H 0.099 0.901 24 H 0.100 0.900 25 H 0.122 0.878 26 H 0.200 0.800 27 H 0.123 0.877 28 H 0.136 0.864 29 H 0.064 0.936 30 H 0.136 0.864 31 H 0.179 0.821 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.098 -9.535 -1.908 14.756 hybrid contribution -0.620 -0.080 0.752 0.978 sum -11.718 -9.615 -1.156 15.202 Atomic orbital electron populations 1.22210 0.74969 1.05285 1.04052 1.43861 1.06915 1.03061 1.63059 1.21666 0.89553 0.91552 1.06213 1.22114 0.96387 0.92934 1.07570 1.17096 0.87324 0.82839 0.94167 0.97641 1.58960 1.45297 1.26260 1.04022 1.21034 1.14075 1.28246 0.93782 0.94403 1.25607 0.96585 0.94956 0.99442 1.70212 1.21255 1.27962 1.32250 0.85911 0.77862 0.77789 0.81670 1.20074 1.20949 1.20117 1.19372 0.91915 0.94009 1.05867 1.20626 0.98381 0.93016 0.98240 1.20742 0.96544 0.94819 1.02370 1.21110 0.91062 1.00012 1.02499 1.16791 0.79455 0.88469 1.11107 1.91405 1.36205 1.90087 1.94801 1.18452 0.91484 0.87924 1.08402 0.90142 0.89954 0.87820 0.79968 0.87664 0.86423 0.93625 0.86386 0.82102 0.81561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.65 10.83 127.77 1.38 3.03 16 2 N -0.49 -15.77 3.18 -539.13 -1.71 -17.48 16 3 C 0.03 1.22 10.53 83.01 0.87 2.10 16 4 C -0.18 -7.87 5.39 -18.63 -0.10 -7.97 16 5 C 0.30 14.99 3.13 43.42 0.14 15.13 16 6 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 7 N -0.82 -37.86 8.23 -174.96 -1.44 -39.30 16 8 C -0.53 -29.73 8.71 25.60 0.22 -29.51 16 9 H 0.04 2.16 7.74 -2.91 -0.02 2.14 16 10 C 0.04 2.10 5.39 84.65 0.46 2.56 16 11 N -0.88 -51.82 12.77 21.45 0.27 -51.55 16 12 Si 0.94 44.31 29.54 68.60 2.03 46.33 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 14 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 16 C -0.11 -4.33 6.35 -20.20 -0.13 -4.46 16 17 C -0.08 -3.11 10.05 22.24 0.22 -2.89 16 18 C -0.13 -3.56 9.97 22.03 0.22 -3.34 16 19 C -0.13 -3.40 9.99 22.34 0.22 -3.18 16 20 C 0.06 1.99 7.32 22.46 0.16 2.16 16 21 F -0.15 -4.19 15.83 44.97 0.71 -3.48 16 22 C 0.05 1.64 6.82 39.04 0.27 1.90 16 23 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.08 1.76 6.96 -2.39 -0.02 1.74 16 25 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.18 5.51 7.31 -2.91 -0.02 5.49 16 27 H 0.31 12.80 9.06 -89.69 -0.81 11.98 16 28 H 0.32 13.86 8.00 -89.70 -0.72 13.15 16 29 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 31 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 32 H 0.17 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -67.06 281.34 3.43 -63.63 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.37 Total: 26.33 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 3.94 Total: -24.49 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -2.88 Total: -108.32 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.71 Total: -3.48 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -67.06 3.43 -63.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259498904.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.203 kcal (2) G-P(sol) polarization free energy of solvation -67.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds