Wall clock time and date at job start Mon Mar 30 2020 06:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36805 * 125.07185 * 2 1 4 4 C 1.34243 * 109.93304 * 180.15784 * 3 2 1 5 5 C 1.50698 * 126.49324 * 179.88913 * 4 3 2 6 6 H 1.09001 * 109.46665 * 144.68781 * 5 4 3 7 7 N 1.46899 * 109.47365 * 24.68629 * 5 4 3 8 8 C 1.50706 * 109.47294 * 264.68400 * 5 4 3 9 9 H 1.07999 * 119.99515 * 0.02562 * 8 5 4 10 10 C 1.37870 * 120.00176 * 180.02562 * 8 5 4 11 11 N 1.31520 * 119.99883 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 120.00043 * 180.02562 * 10 8 5 13 13 H 1.48494 * 109.47288 * 59.99994 * 12 10 8 14 14 H 1.48503 * 109.47086 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.46819 * 299.99648 * 12 10 8 16 16 C 1.46488 * 107.00710 * 359.62680 * 4 3 2 17 17 C 1.39668 * 133.96831 * 180.22463 * 16 4 3 18 18 C 1.37796 * 119.62697 * 179.97438 * 17 16 4 19 19 F 1.35104 * 119.82924 * 180.02562 * 18 17 16 20 20 C 1.39030 * 120.33351 * 359.97438 * 18 17 16 21 21 C 1.37711 * 120.64761 * 359.97438 * 20 18 17 22 22 C 1.37814 * 125.06515 * 179.73786 * 2 1 3 23 23 H 1.09003 * 109.46717 * 270.26298 * 1 2 3 24 24 H 1.09001 * 109.46619 * 30.25980 * 1 2 3 25 25 H 1.08998 * 109.47033 * 150.26530 * 1 2 3 26 26 H 1.08007 * 125.03553 * 0.04474 * 3 2 1 27 27 H 1.00903 * 110.99644 * 176.04275 * 7 5 4 28 28 H 1.00897 * 110.99782 * 299.99792 * 7 5 4 29 29 H 0.97004 * 119.99507 * 180.02562 * 11 10 8 30 30 H 1.08004 * 120.18683 * 359.97438 * 17 16 4 31 31 H 1.07995 * 119.67659 * 180.02562 * 20 18 17 32 32 H 1.08001 * 120.02174 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2511 1.1197 0.0000 4 6 3.5470 0.7691 -0.0035 5 6 4.7285 1.7045 -0.0070 6 1 5.5355 1.2726 0.5849 7 7 4.3330 2.9952 0.5721 8 6 5.2002 1.9127 -1.4231 9 1 4.6946 1.4175 -2.2389 10 6 6.2771 2.7353 -1.6771 11 7 6.8930 3.3379 -0.6835 12 14 6.8613 2.9939 -3.4325 13 1 5.7619 3.5831 -4.2383 14 1 8.0257 3.9156 -3.4359 15 1 7.2604 1.6891 -4.0186 16 6 3.5948 -0.6950 0.0032 17 6 4.6311 -1.6314 0.0075 18 6 4.3335 -2.9768 0.0142 19 9 5.3328 -3.8861 0.0188 20 6 3.0102 -3.4032 0.0172 21 6 1.9787 -2.4909 0.0142 22 6 2.2568 -1.1280 0.0052 23 1 -0.3633 0.0047 1.0277 24 1 -0.3632 0.8877 -0.5179 25 1 -0.3633 -0.8923 -0.5097 26 1 1.8836 2.1353 0.0007 27 1 5.1237 3.6184 0.6404 28 1 3.5856 3.4161 0.0408 29 1 7.6505 3.9169 -0.8623 30 1 5.6599 -1.3027 0.0055 31 1 2.7891 -4.4603 0.0229 32 1 0.9544 -2.8333 0.0170 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259501165.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:08 Heat of formation + Delta-G solvation = 12.120059 kcal Electronic energy + Delta-G solvation = -17560.525933 eV Core-core repulsion = 14628.766751 eV Total energy + Delta-G solvation = -2931.759181 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.31851 -40.78422 -36.35042 -34.94827 -32.33557 -30.78800 -29.67559 -28.13323 -26.52334 -25.21808 -22.55321 -22.08779 -20.99767 -18.68354 -16.91022 -16.61542 -16.40813 -15.69139 -15.17867 -14.77811 -14.74785 -14.55420 -13.72493 -13.67525 -12.98492 -12.85854 -12.66138 -12.37299 -12.29014 -11.99976 -11.64621 -11.16452 -10.95092 -10.72403 -10.56605 -10.36181 -10.02066 -9.67009 -9.07440 -8.58583 -7.62649 -7.25892 -6.88440 -6.02720 -4.19900 1.46344 1.84558 3.23047 3.26467 3.31545 3.32500 3.41778 4.21162 4.39489 4.75122 4.93363 4.98082 5.16656 5.27791 5.30601 5.40451 5.49997 5.62290 5.94445 6.04707 6.26989 6.33207 6.52407 6.60477 6.75973 6.89919 7.28057 7.28566 7.61814 7.73521 7.79632 7.93362 8.16756 8.73147 8.97535 9.13698 9.51391 10.93224 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.019654 B = 0.007781 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.295749 B = 3597.785535 C = 4455.282764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.494 5.494 3 C 0.033 3.967 4 C -0.098 4.098 5 C 0.271 3.729 6 H 0.046 0.954 7 N -0.850 5.850 8 C -0.538 4.538 9 H 0.054 0.946 10 C 0.065 3.935 11 N -0.896 5.896 12 Si 0.895 3.105 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.276 1.276 16 C -0.075 4.075 17 C -0.085 4.085 18 C 0.048 3.952 19 F -0.150 7.150 20 C -0.138 4.138 21 C -0.112 4.112 22 C 0.086 3.914 23 H 0.062 0.938 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.165 0.835 27 H 0.356 0.644 28 H 0.308 0.692 29 H 0.265 0.735 30 H 0.137 0.863 31 H 0.129 0.871 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.152 -7.383 1.398 13.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.179 5.179 3 C -0.089 4.089 4 C -0.105 4.105 5 C 0.161 3.839 6 H 0.064 0.936 7 N -0.379 5.379 8 C -0.578 4.578 9 H 0.072 0.928 10 C -0.137 4.137 11 N -0.535 5.535 12 Si 0.723 3.277 13 H -0.204 1.204 14 H -0.212 1.212 15 H -0.202 1.202 16 C -0.081 4.081 17 C -0.104 4.104 18 C 0.027 3.973 19 F -0.129 7.129 20 C -0.158 4.158 21 C -0.132 4.132 22 C -0.021 4.021 23 H 0.081 0.919 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.182 0.818 27 H 0.172 0.828 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.155 0.845 31 H 0.147 0.853 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.494 -7.643 2.107 13.963 hybrid contribution 0.785 0.409 -2.014 2.200 sum -10.708 -7.234 0.093 12.923 Atomic orbital electron populations 1.21791 0.78131 1.03493 1.02255 1.43694 1.05174 1.04322 1.64751 1.21465 0.89983 0.90212 1.07215 1.20968 0.94919 0.90834 1.03740 1.17364 0.87867 0.85571 0.93124 0.93595 1.59485 1.14595 1.08044 1.55799 1.21813 1.14419 1.27953 0.93575 0.92777 1.25013 0.95800 0.95613 0.97272 1.69734 1.22165 1.30893 1.30715 0.86610 0.78141 0.78132 0.84852 1.20361 1.21237 1.20160 1.18938 0.90891 0.93834 1.04406 1.20551 1.00278 0.89973 0.99584 1.17242 0.84574 0.86160 1.09304 1.91431 1.60291 1.66453 1.94762 1.20548 0.90626 0.99568 1.05059 1.19618 0.98598 0.88972 1.06057 1.18249 0.90525 0.88195 1.05149 0.91943 0.90282 0.90844 0.81813 0.82756 0.88330 0.92479 0.84528 0.85347 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.91 11.03 59.85 0.66 1.57 16 2 N -0.49 -7.98 3.18 -121.79 -0.39 -8.36 16 3 C 0.03 0.61 10.57 -16.74 -0.18 0.43 16 4 C -0.10 -2.15 5.38 -102.71 -0.55 -2.70 16 5 C 0.27 6.76 3.23 -70.01 -0.23 6.53 16 6 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 7 N -0.85 -19.79 8.95 -6.65 -0.06 -19.85 16 8 C -0.54 -14.46 8.71 -34.44 -0.30 -14.76 16 9 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 10 C 0.07 1.75 5.38 -17.82 -0.10 1.65 16 11 N -0.90 -24.62 11.54 55.43 0.64 -23.98 16 12 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 C -0.07 -1.54 6.35 -105.14 -0.67 -2.21 16 17 C -0.08 -1.68 10.07 -39.21 -0.40 -2.08 16 18 C 0.05 0.84 7.29 -39.45 -0.29 0.56 16 19 F -0.15 -2.64 17.26 2.25 0.04 -2.61 16 20 C -0.14 -2.08 9.99 -39.48 -0.39 -2.48 16 21 C -0.11 -1.65 9.95 -39.45 -0.39 -2.05 16 22 C 0.09 1.51 6.81 -83.95 -0.57 0.94 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 26 H 0.16 2.72 7.31 -52.48 -0.38 2.34 16 27 H 0.36 8.93 7.08 -39.29 -0.28 8.66 16 28 H 0.31 6.67 7.96 -39.29 -0.31 6.36 16 29 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.14 2.78 8.06 -52.48 -0.42 2.36 16 31 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 281.63 15.07 4.24 4.24 Total: -1.00 -29.10 281.63 -7.42 -36.51 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -3.47 Total: 12.54 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -3.40 Total: -14.59 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.19 Total: -52.19 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.10 -7.42 -36.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259501165.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.635 kcal (2) G-P(sol) polarization free energy of solvation -29.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds