Wall clock time and date at job start Mon Mar 30 2020 06:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36805 * 125.07185 * 2 1 4 4 C 1.34243 * 109.93304 * 180.15784 * 3 2 1 5 5 C 1.50698 * 126.49324 * 179.88913 * 4 3 2 6 6 H 1.09001 * 109.46665 * 144.68781 * 5 4 3 7 7 N 1.46899 * 109.47365 * 24.68629 * 5 4 3 8 8 C 1.50706 * 109.47294 * 264.68400 * 5 4 3 9 9 H 1.07999 * 119.99515 * 0.02562 * 8 5 4 10 10 C 1.37870 * 120.00176 * 180.02562 * 8 5 4 11 11 N 1.31520 * 119.99883 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 120.00043 * 180.02562 * 10 8 5 13 13 H 1.48494 * 109.47288 * 59.99994 * 12 10 8 14 14 H 1.48503 * 109.47086 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.46819 * 299.99648 * 12 10 8 16 16 C 1.46488 * 107.00710 * 359.62680 * 4 3 2 17 17 C 1.39668 * 133.96831 * 180.22463 * 16 4 3 18 18 C 1.37796 * 119.62697 * 179.97438 * 17 16 4 19 19 F 1.35104 * 119.82924 * 180.02562 * 18 17 16 20 20 C 1.39030 * 120.33351 * 359.97438 * 18 17 16 21 21 C 1.37711 * 120.64761 * 359.97438 * 20 18 17 22 22 C 1.37814 * 125.06515 * 179.73786 * 2 1 3 23 23 H 1.09003 * 109.46717 * 270.26298 * 1 2 3 24 24 H 1.09001 * 109.46619 * 30.25980 * 1 2 3 25 25 H 1.08998 * 109.47033 * 150.26530 * 1 2 3 26 26 H 1.08007 * 125.03553 * 0.04474 * 3 2 1 27 27 H 1.00903 * 110.99644 * 176.04275 * 7 5 4 28 28 H 1.00897 * 110.99782 * 299.99792 * 7 5 4 29 29 H 0.97004 * 119.99507 * 180.02562 * 11 10 8 30 30 H 1.08004 * 120.18683 * 359.97438 * 17 16 4 31 31 H 1.07995 * 119.67659 * 180.02562 * 20 18 17 32 32 H 1.08001 * 120.02174 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2511 1.1197 0.0000 4 6 3.5470 0.7691 -0.0035 5 6 4.7285 1.7045 -0.0070 6 1 5.5355 1.2726 0.5849 7 7 4.3330 2.9952 0.5721 8 6 5.2002 1.9127 -1.4231 9 1 4.6946 1.4175 -2.2389 10 6 6.2771 2.7353 -1.6771 11 7 6.8930 3.3379 -0.6835 12 14 6.8613 2.9939 -3.4325 13 1 5.7619 3.5831 -4.2383 14 1 8.0257 3.9156 -3.4359 15 1 7.2604 1.6891 -4.0186 16 6 3.5948 -0.6950 0.0032 17 6 4.6311 -1.6314 0.0075 18 6 4.3335 -2.9768 0.0142 19 9 5.3328 -3.8861 0.0188 20 6 3.0102 -3.4032 0.0172 21 6 1.9787 -2.4909 0.0142 22 6 2.2568 -1.1280 0.0052 23 1 -0.3633 0.0047 1.0277 24 1 -0.3632 0.8877 -0.5179 25 1 -0.3633 -0.8923 -0.5097 26 1 1.8836 2.1353 0.0007 27 1 5.1237 3.6184 0.6404 28 1 3.5856 3.4161 0.0408 29 1 7.6505 3.9169 -0.8623 30 1 5.6599 -1.3027 0.0055 31 1 2.7891 -4.4603 0.0229 32 1 0.9544 -2.8333 0.0170 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259501165.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:08 Heat of formation + Delta-G solvation = -5.904253 kcal Electronic energy + Delta-G solvation = -17561.307526 eV Core-core repulsion = 14628.766751 eV Total energy + Delta-G solvation = -2932.540774 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.72359 -42.13558 -37.68216 -36.76002 -33.98795 -32.52456 -30.91999 -29.52745 -28.28555 -26.73364 -24.06420 -23.65513 -22.33979 -20.18478 -18.54045 -18.32566 -17.90278 -17.05383 -16.55920 -16.52232 -16.11161 -15.94374 -15.41558 -14.98643 -14.76694 -14.41993 -13.93022 -13.60968 -13.57391 -13.31463 -13.07684 -13.03433 -12.76387 -12.66481 -12.06882 -11.88529 -11.72890 -11.47853 -10.73840 -10.42115 -9.19900 -8.98718 -8.41132 -8.00634 -6.34014 0.11329 0.49920 1.36084 1.38036 1.45699 1.92295 2.03386 2.39139 2.83102 3.06784 3.41228 3.73661 4.00460 4.02382 4.15600 4.31386 4.53565 4.58305 4.66165 4.79015 4.84507 4.92313 5.03751 5.14547 5.26978 5.33843 5.63654 5.66367 5.87301 6.02184 6.10895 6.31868 6.56557 6.70116 6.97149 7.16311 7.42629 8.84815 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.019654 B = 0.007781 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.295749 B = 3597.785535 C = 4455.282764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.485 5.485 3 C 0.055 3.945 4 C -0.155 4.155 5 C 0.280 3.720 6 H -0.003 1.003 7 N -0.839 5.839 8 C -0.550 4.550 9 H 0.040 0.960 10 C 0.021 3.979 11 N -0.917 5.917 12 Si 0.955 3.045 13 H -0.269 1.269 14 H -0.280 1.280 15 H -0.280 1.280 16 C -0.111 4.111 17 C -0.123 4.123 18 C 0.046 3.954 19 F -0.153 7.153 20 C -0.130 4.130 21 C -0.089 4.089 22 C 0.079 3.921 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.099 0.901 26 H 0.183 0.817 27 H 0.345 0.655 28 H 0.319 0.681 29 H 0.267 0.733 30 H 0.105 0.895 31 H 0.170 0.830 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.414 -8.616 0.701 16.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.169 5.169 3 C -0.069 4.069 4 C -0.162 4.162 5 C 0.169 3.831 6 H 0.014 0.986 7 N -0.367 5.367 8 C -0.590 4.590 9 H 0.059 0.941 10 C -0.179 4.179 11 N -0.557 5.557 12 Si 0.781 3.219 13 H -0.194 1.194 14 H -0.205 1.205 15 H -0.206 1.206 16 C -0.117 4.117 17 C -0.142 4.142 18 C 0.025 3.975 19 F -0.132 7.132 20 C -0.150 4.150 21 C -0.110 4.110 22 C -0.029 4.029 23 H 0.100 0.900 24 H 0.115 0.885 25 H 0.117 0.883 26 H 0.200 0.800 27 H 0.159 0.841 28 H 0.129 0.871 29 H 0.076 0.924 30 H 0.124 0.876 31 H 0.187 0.813 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -14.803 -8.892 1.412 17.326 hybrid contribution 1.735 0.738 -1.752 2.574 sum -13.068 -8.155 -0.340 15.407 Atomic orbital electron populations 1.22245 0.74267 1.05761 1.04233 1.43966 1.07210 1.02874 1.62839 1.21612 0.89280 0.91719 1.04318 1.20728 0.95344 0.91450 1.08635 1.17005 0.88385 0.86512 0.91185 0.98556 1.59425 1.14208 1.07337 1.55696 1.22005 1.14819 1.27852 0.94299 0.94126 1.25726 0.95869 0.95422 1.00882 1.69840 1.22380 1.31204 1.32302 0.85668 0.77961 0.77756 0.80561 1.19411 1.20483 1.20624 1.19131 0.92946 0.93460 1.06117 1.20471 0.99131 0.91624 1.03021 1.17470 0.85956 0.85133 1.08912 1.91418 1.60839 1.66227 1.94742 1.20980 0.88880 1.01782 1.03355 1.20142 1.00853 0.87191 1.02765 1.18539 0.89296 0.89828 1.05233 0.90005 0.88518 0.88276 0.80007 0.84103 0.87136 0.92375 0.87631 0.81301 0.81233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.22 11.03 127.77 1.41 2.63 16 2 N -0.49 -14.27 3.18 -539.22 -1.72 -15.98 16 3 C 0.06 2.00 10.57 83.00 0.88 2.88 16 4 C -0.15 -7.04 5.38 -18.63 -0.10 -7.14 16 5 C 0.28 14.81 3.23 43.42 0.14 14.96 16 6 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 7 N -0.84 -40.54 8.95 -174.95 -1.57 -42.11 16 8 C -0.55 -30.96 8.71 25.60 0.22 -30.73 16 9 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 10 C 0.02 1.15 5.38 84.65 0.46 1.61 16 11 N -0.92 -52.23 11.54 21.45 0.25 -51.98 16 12 Si 0.95 44.20 29.54 68.60 2.03 46.23 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 15 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 16 C -0.11 -4.72 6.35 -20.20 -0.13 -4.85 16 17 C -0.12 -5.21 10.07 22.51 0.23 -4.98 16 18 C 0.05 1.61 7.29 22.36 0.16 1.77 16 19 F -0.15 -5.41 17.26 44.97 0.78 -4.64 16 20 C -0.13 -3.49 9.99 22.34 0.22 -3.27 16 21 C -0.09 -2.25 9.95 22.35 0.22 -2.03 16 22 C 0.08 2.61 6.81 38.99 0.27 2.87 16 23 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.10 1.17 8.10 -2.39 -0.02 1.15 16 26 H 0.18 5.74 7.31 -2.91 -0.02 5.72 16 27 H 0.34 18.02 7.08 -89.69 -0.64 17.39 16 28 H 0.32 14.03 7.96 -89.70 -0.71 13.31 16 29 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 30 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 31 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 32 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -67.48 281.63 3.56 -63.93 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: -0.19 Total: 30.83 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 3.98 Total: -26.28 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -3.03 Total: -110.07 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 0.78 Total: -4.64 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -67.48 3.56 -63.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259501165.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.024 kcal (2) G-P(sol) polarization free energy of solvation -67.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds