Wall clock time and date at job start Mon Mar 30 2020 06:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36809 * 125.07022 * 2 1 4 4 C 1.34240 * 109.93047 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.49418 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.47478 * 220.02458 * 5 4 3 7 7 N 1.46900 * 109.47488 * 340.02501 * 5 4 3 8 8 C 1.50702 * 109.47446 * 100.02287 * 5 4 3 9 9 H 1.08003 * 119.99799 * 357.79168 * 8 5 4 10 10 C 1.37870 * 120.00532 * 177.78337 * 8 5 4 11 11 N 1.31519 * 120.00072 * 353.64270 * 10 8 5 12 12 Si 1.86796 * 120.00307 * 173.63615 * 10 8 5 13 13 H 1.48498 * 109.47214 * 265.07298 * 12 10 8 14 14 H 1.48500 * 109.47050 * 25.06762 * 12 10 8 15 15 H 1.48499 * 109.47306 * 145.07168 * 12 10 8 16 16 C 1.46480 * 107.01050 * 0.26374 * 4 3 2 17 17 C 1.39684 * 133.97170 * 180.48465 * 16 4 3 18 18 C 1.37785 * 119.63205 * 179.55822 * 17 16 4 19 19 F 1.35096 * 119.83521 * 179.71740 * 18 17 16 20 20 C 1.39041 * 120.33102 * 359.73420 * 18 17 16 21 21 C 1.37707 * 120.64986 * 359.97438 * 20 18 17 22 22 C 1.37814 * 125.06361 * 179.97438 * 2 1 3 23 23 H 1.09002 * 109.47207 * 90.02214 * 1 2 3 24 24 H 1.08999 * 109.47152 * 210.02134 * 1 2 3 25 25 H 1.08998 * 109.47103 * 330.02416 * 1 2 3 26 26 H 1.08003 * 125.03151 * 0.02562 * 3 2 1 27 27 H 1.00907 * 110.99839 * 65.63471 * 7 5 4 28 28 H 1.00900 * 111.00496 * 189.59206 * 7 5 4 29 29 H 0.96991 * 120.00338 * 179.97438 * 11 10 8 30 30 H 1.08000 * 120.17717 * 359.24862 * 17 16 4 31 31 H 1.07994 * 119.67277 * 179.97438 * 20 18 17 32 32 H 1.07995 * 120.02450 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.1197 0.0000 4 6 3.5469 0.7691 0.0006 5 6 4.7285 1.7045 0.0013 6 1 5.5022 1.3131 -0.6593 7 7 4.3048 3.0291 -0.4718 8 6 5.2752 1.8222 1.4007 9 1 4.7917 1.3027 2.2148 10 6 6.3927 2.5929 1.6418 11 7 7.0549 3.1234 0.6369 12 14 6.9662 2.8838 3.3956 13 1 6.4079 4.1669 3.8925 14 1 6.4968 1.7718 4.2607 15 1 8.4496 2.9438 3.4278 16 6 3.5947 -0.6949 -0.0055 17 6 4.6311 -1.6314 0.0007 18 6 4.3336 -2.9768 0.0010 19 9 5.3327 -3.8861 0.0012 20 6 3.0102 -3.4032 0.0006 21 6 1.9786 -2.4909 0.0006 22 6 2.2568 -1.1280 0.0005 23 1 -0.3634 -0.0004 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5134 26 1 1.8835 2.1353 0.0004 27 1 3.6553 3.4529 0.1738 28 1 5.1010 3.6285 -0.6295 29 1 7.8408 3.6659 0.8065 30 1 5.6599 -1.3027 0.0003 31 1 2.7891 -4.4603 0.0004 32 1 0.9544 -2.8333 -0.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259501167.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:11 Heat of formation + Delta-G solvation = 11.469896 kcal Electronic energy + Delta-G solvation = -17568.472283 eV Core-core repulsion = 14636.684909 eV Total energy + Delta-G solvation = -2931.787375 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.30128 -40.76627 -36.33089 -34.93270 -32.31418 -30.84335 -29.66037 -28.12830 -26.52552 -25.20065 -22.53070 -22.09933 -20.97075 -18.67351 -16.89002 -16.58912 -16.42336 -15.67457 -15.16274 -14.75774 -14.73651 -14.53457 -13.78905 -13.66187 -12.99351 -12.85796 -12.62204 -12.36636 -12.28796 -11.97097 -11.66311 -11.16603 -10.96274 -10.77387 -10.55029 -10.34178 -10.01912 -9.61923 -9.06487 -8.55259 -7.61014 -7.30330 -6.87886 -6.04806 -4.18888 1.48230 1.86181 3.24014 3.24588 3.32080 3.34900 3.43299 4.22739 4.40138 4.76967 4.94132 4.99751 5.16401 5.28938 5.31568 5.42533 5.50772 5.63781 5.96458 6.06398 6.29228 6.30846 6.52869 6.62741 6.78179 6.92398 7.29184 7.30251 7.62881 7.73972 7.80137 7.93100 8.16565 8.74472 8.91308 9.06404 9.50359 10.93445 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.019481 B = 0.007904 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.932394 B = 3541.846184 C = 4432.540471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.495 5.495 3 C 0.033 3.967 4 C -0.098 4.098 5 C 0.270 3.730 6 H 0.049 0.951 7 N -0.849 5.849 8 C -0.537 4.537 9 H 0.055 0.945 10 C 0.066 3.934 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.274 1.274 15 H -0.286 1.286 16 C -0.074 4.074 17 C -0.083 4.083 18 C 0.047 3.953 19 F -0.151 7.151 20 C -0.138 4.138 21 C -0.112 4.112 22 C 0.085 3.915 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.165 0.835 27 H 0.312 0.688 28 H 0.349 0.651 29 H 0.264 0.736 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.391 -6.930 -1.341 13.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.180 5.180 3 C -0.088 4.088 4 C -0.105 4.105 5 C 0.160 3.840 6 H 0.067 0.933 7 N -0.376 5.376 8 C -0.577 4.577 9 H 0.073 0.927 10 C -0.137 4.137 11 N -0.532 5.532 12 Si 0.720 3.280 13 H -0.208 1.208 14 H -0.199 1.199 15 H -0.212 1.212 16 C -0.080 4.080 17 C -0.102 4.102 18 C 0.027 3.973 19 F -0.129 7.129 20 C -0.158 4.158 21 C -0.133 4.133 22 C -0.022 4.022 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.183 0.817 27 H 0.121 0.879 28 H 0.163 0.837 29 H 0.074 0.926 30 H 0.155 0.845 31 H 0.146 0.854 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.843 -7.182 -2.036 13.999 hybrid contribution 0.947 0.395 1.965 2.217 sum -10.896 -6.787 -0.070 12.837 Atomic orbital electron populations 1.21784 0.78173 1.03466 1.02231 1.43702 1.05158 1.04351 1.64801 1.21483 0.89966 0.90194 1.07205 1.20958 0.94870 0.90827 1.03806 1.17357 0.87549 0.84953 0.94183 0.93299 1.59429 1.20773 1.06773 1.50669 1.21814 1.11888 1.29535 0.94460 0.92682 1.25010 0.95701 0.95820 0.97123 1.69854 1.18841 1.34297 1.30208 0.86572 0.77865 0.78516 0.85038 1.20764 1.19855 1.21163 1.18934 0.90844 0.93831 1.04386 1.20568 1.00352 0.89938 0.99382 1.17246 0.84564 0.86180 1.09360 1.91428 1.60304 1.66448 1.94767 1.20548 0.90638 0.99550 1.05068 1.19610 0.98575 0.88982 1.06143 1.18256 0.90544 0.88193 1.05174 0.91964 0.90875 0.90303 0.81741 0.87939 0.83684 0.92638 0.84457 0.85374 0.86246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 11.03 59.85 0.66 1.58 16 2 N -0.49 -8.00 3.18 -121.79 -0.39 -8.39 16 3 C 0.03 0.61 10.57 -16.74 -0.18 0.43 16 4 C -0.10 -2.15 5.41 -102.71 -0.56 -2.70 16 5 C 0.27 6.68 3.13 -70.02 -0.22 6.46 16 6 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 7 N -0.85 -19.37 8.76 -6.65 -0.06 -19.43 16 8 C -0.54 -14.39 8.64 -34.44 -0.30 -14.69 16 9 H 0.05 1.52 7.75 -52.48 -0.41 1.12 16 10 C 0.07 1.77 5.35 -17.82 -0.10 1.67 16 11 N -0.89 -24.58 12.02 55.43 0.67 -23.92 16 12 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 C -0.07 -1.53 6.35 -105.13 -0.67 -2.20 16 17 C -0.08 -1.67 10.07 -39.21 -0.39 -2.06 16 18 C 0.05 0.84 7.29 -39.45 -0.29 0.55 16 19 F -0.15 -2.67 17.26 2.25 0.04 -2.64 16 20 C -0.14 -2.10 9.99 -39.48 -0.39 -2.50 16 21 C -0.11 -1.68 9.95 -39.46 -0.39 -2.07 16 22 C 0.09 1.51 6.81 -83.95 -0.57 0.94 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.17 2.73 7.48 -52.48 -0.39 2.34 16 27 H 0.31 6.67 8.26 -39.29 -0.32 6.35 16 28 H 0.35 8.54 7.66 -39.29 -0.30 8.24 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.14 2.85 8.06 -52.49 -0.42 2.42 16 31 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 282.81 15.07 4.26 4.26 Total: -1.00 -29.03 282.81 -7.41 -36.44 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -3.52 Total: 12.20 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -3.39 Total: -14.59 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.22 Total: -51.73 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.03 -7.41 -36.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259501167.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.913 kcal (2) G-P(sol) polarization free energy of solvation -29.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds