Wall clock time and date at job start Mon Mar 30 2020 06:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36809 * 125.07022 * 2 1 4 4 C 1.34240 * 109.93047 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.49418 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.47478 * 220.02458 * 5 4 3 7 7 N 1.46900 * 109.47488 * 340.02501 * 5 4 3 8 8 C 1.50702 * 109.47446 * 100.02287 * 5 4 3 9 9 H 1.08003 * 119.99799 * 357.79168 * 8 5 4 10 10 C 1.37870 * 120.00532 * 177.78337 * 8 5 4 11 11 N 1.31519 * 120.00072 * 353.64270 * 10 8 5 12 12 Si 1.86796 * 120.00307 * 173.63615 * 10 8 5 13 13 H 1.48498 * 109.47214 * 265.07298 * 12 10 8 14 14 H 1.48500 * 109.47050 * 25.06762 * 12 10 8 15 15 H 1.48499 * 109.47306 * 145.07168 * 12 10 8 16 16 C 1.46480 * 107.01050 * 0.26374 * 4 3 2 17 17 C 1.39684 * 133.97170 * 180.48465 * 16 4 3 18 18 C 1.37785 * 119.63205 * 179.55822 * 17 16 4 19 19 F 1.35096 * 119.83521 * 179.71740 * 18 17 16 20 20 C 1.39041 * 120.33102 * 359.73420 * 18 17 16 21 21 C 1.37707 * 120.64986 * 359.97438 * 20 18 17 22 22 C 1.37814 * 125.06361 * 179.97438 * 2 1 3 23 23 H 1.09002 * 109.47207 * 90.02214 * 1 2 3 24 24 H 1.08999 * 109.47152 * 210.02134 * 1 2 3 25 25 H 1.08998 * 109.47103 * 330.02416 * 1 2 3 26 26 H 1.08003 * 125.03151 * 0.02562 * 3 2 1 27 27 H 1.00907 * 110.99839 * 65.63471 * 7 5 4 28 28 H 1.00900 * 111.00496 * 189.59206 * 7 5 4 29 29 H 0.96991 * 120.00338 * 179.97438 * 11 10 8 30 30 H 1.08000 * 120.17717 * 359.24862 * 17 16 4 31 31 H 1.07994 * 119.67277 * 179.97438 * 20 18 17 32 32 H 1.07995 * 120.02450 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.1197 0.0000 4 6 3.5469 0.7691 0.0006 5 6 4.7285 1.7045 0.0013 6 1 5.5022 1.3131 -0.6593 7 7 4.3048 3.0291 -0.4718 8 6 5.2752 1.8222 1.4007 9 1 4.7917 1.3027 2.2148 10 6 6.3927 2.5929 1.6418 11 7 7.0549 3.1234 0.6369 12 14 6.9662 2.8838 3.3956 13 1 6.4079 4.1669 3.8925 14 1 6.4968 1.7718 4.2607 15 1 8.4496 2.9438 3.4278 16 6 3.5947 -0.6949 -0.0055 17 6 4.6311 -1.6314 0.0007 18 6 4.3336 -2.9768 0.0010 19 9 5.3327 -3.8861 0.0012 20 6 3.0102 -3.4032 0.0006 21 6 1.9786 -2.4909 0.0006 22 6 2.2568 -1.1280 0.0005 23 1 -0.3634 -0.0004 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5134 26 1 1.8835 2.1353 0.0004 27 1 3.6553 3.4529 0.1738 28 1 5.1010 3.6285 -0.6295 29 1 7.8408 3.6659 0.8065 30 1 5.6599 -1.3027 0.0003 31 1 2.7891 -4.4603 0.0004 32 1 0.9544 -2.8333 -0.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259501167.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:11 Heat of formation + Delta-G solvation = -6.569431 kcal Electronic energy + Delta-G solvation = -17569.254527 eV Core-core repulsion = 14636.684909 eV Total energy + Delta-G solvation = -2932.569619 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.72111 -42.12290 -37.66889 -36.73912 -33.97956 -32.56952 -30.91394 -29.52650 -28.27072 -26.72716 -24.05334 -23.65957 -22.32210 -20.17479 -18.55521 -18.30510 -17.89024 -17.04257 -16.54319 -16.51444 -16.12469 -15.93725 -15.46182 -14.98829 -14.77154 -14.38030 -13.91827 -13.60894 -13.57738 -13.30956 -13.06958 -13.04227 -12.79736 -12.70135 -12.05376 -11.85715 -11.72184 -11.45703 -10.72753 -10.39800 -9.22599 -8.97870 -8.41409 -8.01965 -6.32954 0.12273 0.50445 1.34521 1.37188 1.47218 1.93500 2.04439 2.39367 2.83840 3.06466 3.42051 3.74550 4.00781 4.03499 4.16672 4.30786 4.53520 4.58616 4.65834 4.79507 4.85240 4.93742 5.06460 5.16178 5.27629 5.35128 5.63131 5.66476 5.88491 6.02296 6.11971 6.32065 6.57662 6.72421 6.90824 7.13238 7.40818 8.85201 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.019481 B = 0.007904 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.932394 B = 3541.846184 C = 4432.540471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.486 5.486 3 C 0.057 3.943 4 C -0.155 4.155 5 C 0.280 3.720 6 H -0.001 1.001 7 N -0.835 5.835 8 C -0.547 4.547 9 H 0.039 0.961 10 C 0.022 3.978 11 N -0.917 5.917 12 Si 0.953 3.047 13 H -0.269 1.269 14 H -0.278 1.278 15 H -0.283 1.283 16 C -0.110 4.110 17 C -0.122 4.122 18 C 0.045 3.955 19 F -0.154 7.154 20 C -0.131 4.131 21 C -0.090 4.090 22 C 0.078 3.922 23 H 0.081 0.919 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.184 0.816 27 H 0.322 0.678 28 H 0.338 0.662 29 H 0.266 0.734 30 H 0.104 0.896 31 H 0.169 0.831 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.701 -8.072 -0.632 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.170 5.170 3 C -0.068 4.068 4 C -0.162 4.162 5 C 0.169 3.831 6 H 0.017 0.983 7 N -0.361 5.361 8 C -0.587 4.587 9 H 0.058 0.942 10 C -0.178 4.178 11 N -0.556 5.556 12 Si 0.779 3.221 13 H -0.195 1.195 14 H -0.203 1.203 15 H -0.209 1.209 16 C -0.116 4.116 17 C -0.141 4.141 18 C 0.024 3.976 19 F -0.133 7.133 20 C -0.150 4.150 21 C -0.110 4.110 22 C -0.030 4.030 23 H 0.100 0.900 24 H 0.117 0.883 25 H 0.115 0.885 26 H 0.201 0.799 27 H 0.132 0.868 28 H 0.150 0.850 29 H 0.075 0.925 30 H 0.123 0.877 31 H 0.187 0.813 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -15.200 -8.336 -1.328 17.386 hybrid contribution 1.909 0.694 1.703 2.650 sum -13.291 -7.642 0.375 15.336 Atomic orbital electron populations 1.22239 0.74291 1.05749 1.04214 1.43978 1.07208 1.02900 1.62870 1.21634 0.89236 0.91691 1.04208 1.20732 0.95353 0.91404 1.08715 1.16991 0.88127 0.86099 0.91905 0.98335 1.59380 1.20164 1.05937 1.50608 1.21986 1.12247 1.29357 0.95142 0.94230 1.25708 0.95775 0.95662 1.00656 1.69957 1.19121 1.34717 1.31822 0.85627 0.77341 0.78491 0.80648 1.19462 1.20299 1.20917 1.19132 0.92877 0.93511 1.06054 1.20472 0.99136 0.91621 1.02918 1.17477 0.85959 0.85143 1.08992 1.91414 1.60867 1.66231 1.94752 1.20977 0.88874 1.01772 1.03405 1.20135 1.00826 0.87215 1.02811 1.18542 0.89318 0.89833 1.05263 0.90030 0.88329 0.88484 0.79890 0.86842 0.84956 0.92501 0.87738 0.81329 0.81247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.22 11.03 127.77 1.41 2.63 16 2 N -0.49 -14.29 3.18 -539.23 -1.72 -16.00 16 3 C 0.06 2.04 10.57 83.00 0.88 2.92 16 4 C -0.16 -7.05 5.41 -18.63 -0.10 -7.15 16 5 C 0.28 14.69 3.13 43.42 0.14 14.82 16 6 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 7 N -0.83 -39.47 8.76 -174.95 -1.53 -41.00 16 8 C -0.55 -30.75 8.64 25.60 0.22 -30.53 16 9 H 0.04 2.29 7.75 -2.91 -0.02 2.27 16 10 C 0.02 1.22 5.35 84.65 0.45 1.67 16 11 N -0.92 -52.36 12.02 21.45 0.26 -52.10 16 12 Si 0.95 44.22 29.54 68.60 2.03 46.24 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 15 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 16 C -0.11 -4.71 6.35 -20.20 -0.13 -4.83 16 17 C -0.12 -5.22 10.07 22.51 0.23 -5.00 16 18 C 0.04 1.59 7.29 22.36 0.16 1.76 16 19 F -0.15 -5.50 17.26 44.97 0.78 -4.72 16 20 C -0.13 -3.54 9.99 22.34 0.22 -3.32 16 21 C -0.09 -2.28 9.95 22.35 0.22 -2.06 16 22 C 0.08 2.60 6.81 38.99 0.27 2.87 16 23 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.10 1.17 8.10 -2.39 -0.02 1.15 16 25 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.18 5.74 7.48 -2.91 -0.02 5.72 16 27 H 0.32 13.96 8.26 -89.69 -0.74 13.22 16 28 H 0.34 17.24 7.66 -89.69 -0.69 16.55 16 29 H 0.27 14.42 8.31 -92.72 -0.77 13.65 16 30 H 0.10 4.94 8.06 -2.91 -0.02 4.91 16 31 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 32 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -67.48 282.81 3.51 -63.97 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -0.27 Total: 29.83 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 3.97 Total: -26.21 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -2.99 Total: -109.10 kcal Atomic # 9 Polarization: -5.50 SS G_CDS: 0.78 Total: -4.72 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -67.48 3.51 -63.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259501167.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.399 kcal (2) G-P(sol) polarization free energy of solvation -67.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds