Wall clock time and date at job start Mon Mar 30 2020 06:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36880 * 125.06653 * 2 1 4 4 C 1.34218 * 109.91892 * 180.19712 * 3 2 1 5 5 C 1.50703 * 126.50233 * 179.89503 * 4 3 2 6 6 H 1.08998 * 109.47145 * 219.68201 * 5 4 3 7 7 N 1.46900 * 109.47047 * 339.68425 * 5 4 3 8 8 C 1.50700 * 109.47148 * 99.68180 * 5 4 3 9 9 H 1.08002 * 119.99770 * 0.02562 * 8 5 4 10 10 C 1.37871 * 120.00083 * 179.97438 * 8 5 4 11 11 N 1.31514 * 120.00147 * 0.02562 * 10 8 5 12 12 Si 1.86803 * 120.00278 * 180.02562 * 10 8 5 13 13 H 1.48494 * 109.47228 * 179.97438 * 12 10 8 14 14 H 1.48501 * 109.46793 * 300.00001 * 12 10 8 15 15 H 1.48500 * 109.47000 * 60.00094 * 12 10 8 16 16 C 1.46496 * 106.99102 * 359.62635 * 4 3 2 17 17 C 1.37704 * 125.06001 * 179.77915 * 2 1 3 18 18 C 1.39127 * 133.41171 * 0.02562 * 17 2 1 19 19 C 1.37752 * 119.96710 * 180.02562 * 18 17 2 20 20 C 1.38798 * 120.69096 * 359.95110 * 19 18 17 21 21 C 1.37872 * 120.35414 * 359.97438 * 20 19 18 22 22 F 1.35095 * 120.19655 * 180.02562 * 21 20 19 23 23 H 1.08999 * 109.47525 * 270.22035 * 1 2 3 24 24 H 1.09009 * 109.47031 * 30.22080 * 1 2 3 25 25 H 1.09004 * 109.47477 * 150.21440 * 1 2 3 26 26 H 1.07997 * 125.04345 * 0.08572 * 3 2 1 27 27 H 1.00907 * 110.99867 * 296.04432 * 7 5 4 28 28 H 1.00896 * 111.00376 * 59.99771 * 7 5 4 29 29 H 0.97005 * 119.99661 * 359.97438 * 11 10 8 30 30 H 1.07998 * 120.01808 * 0.02562 * 18 17 2 31 31 H 1.07995 * 119.65714 * 179.97438 * 19 18 17 32 32 H 1.07994 * 119.82496 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2514 1.1203 0.0000 4 6 3.5469 0.7696 -0.0043 5 6 4.7288 1.7047 -0.0080 6 1 5.5022 1.3100 -0.6668 7 7 4.3053 3.0272 -0.4872 8 6 5.2756 1.8287 1.3908 9 1 4.8138 1.2845 2.2013 10 6 6.3660 2.6360 1.6356 11 7 6.9287 3.2984 0.6485 12 14 7.0444 2.7892 3.3694 13 1 8.2096 3.7097 3.3655 14 1 5.9909 3.3271 4.2673 15 1 7.4721 1.4521 3.8535 16 6 3.5941 -0.6946 0.0018 17 6 2.2560 -1.1272 0.0043 18 6 1.9779 -2.4904 0.0091 19 6 3.0097 -3.4030 0.0133 20 6 4.3311 -2.9784 0.0118 21 6 4.6305 -1.6326 0.0055 22 9 5.9178 -1.2229 0.0036 23 1 -0.3634 0.0040 1.0276 24 1 -0.3633 0.8881 -0.5173 25 1 -0.3634 -0.8919 -0.5105 26 1 1.8839 2.1359 0.0013 27 1 3.9946 2.9819 -1.4462 28 1 3.5881 3.4147 0.1073 29 1 6.5767 3.2185 -0.2519 30 1 0.9537 -2.8329 0.0096 31 1 2.7882 -4.4600 0.0175 32 1 5.1291 -3.7061 0.0147 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259505372.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:14 Heat of formation + Delta-G solvation = 16.995846 kcal Electronic energy + Delta-G solvation = -17929.870629 eV Core-core repulsion = 14998.322877 eV Total energy + Delta-G solvation = -2931.547751 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.11945 -40.89789 -36.62747 -35.11853 -32.19811 -30.79795 -29.67531 -28.23065 -26.59786 -24.91600 -22.48825 -21.88052 -21.28695 -19.01298 -17.06447 -16.52219 -16.35219 -15.59136 -15.27741 -14.86244 -14.60227 -14.50282 -14.26628 -13.63644 -13.35175 -12.83966 -12.54737 -12.48489 -12.30331 -11.76425 -11.60274 -11.20098 -10.87946 -10.79628 -10.62920 -10.20152 -9.95171 -9.12327 -8.45507 -8.19348 -7.93839 -7.47968 -6.96270 -6.04351 -3.85660 1.36560 1.80079 3.06317 3.20042 3.55047 3.57816 3.75712 4.08942 4.71657 4.75121 4.83788 4.94462 5.16761 5.19567 5.30290 5.38680 5.42051 5.56759 5.69870 5.88532 6.08798 6.19769 6.38876 6.42942 6.62361 6.68324 7.09741 7.15127 7.33613 7.56670 7.65744 8.14669 8.41223 8.77115 8.84862 9.19063 9.96198 11.34885 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.022782 B = 0.008385 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.747351 B = 3338.315530 C = 3980.825295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.490 5.490 3 C 0.005 3.995 4 C -0.119 4.119 5 C 0.267 3.733 6 H 0.040 0.960 7 N -0.829 5.829 8 C -0.596 4.596 9 H 0.042 0.958 10 C 0.038 3.962 11 N -0.894 5.894 12 Si 1.062 2.938 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.290 1.290 16 C -0.140 4.140 17 C 0.122 3.878 18 C -0.156 4.156 19 C -0.075 4.075 20 C -0.207 4.207 21 C 0.170 3.830 22 F -0.123 7.123 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.160 0.840 27 H 0.301 0.699 28 H 0.323 0.677 29 H 0.289 0.711 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.693 -9.842 -2.502 16.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.175 5.175 3 C -0.117 4.117 4 C -0.127 4.127 5 C 0.157 3.843 6 H 0.058 0.942 7 N -0.356 5.356 8 C -0.635 4.635 9 H 0.060 0.940 10 C -0.172 4.172 11 N -0.528 5.528 12 Si 0.891 3.109 13 H -0.209 1.209 14 H -0.218 1.218 15 H -0.217 1.217 16 C -0.146 4.146 17 C 0.014 3.986 18 C -0.177 4.177 19 C -0.094 4.094 20 C -0.227 4.227 21 C 0.150 3.850 22 F -0.101 7.101 23 H 0.082 0.918 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.178 0.822 27 H 0.111 0.889 28 H 0.135 0.865 29 H 0.101 0.899 30 H 0.134 0.866 31 H 0.146 0.854 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.043 -8.759 -1.491 14.173 hybrid contribution -2.192 -1.161 -0.865 2.627 sum -13.235 -9.920 -2.356 16.707 Atomic orbital electron populations 1.21812 0.77820 1.03547 1.02490 1.43642 1.05277 1.04177 1.64388 1.21348 0.89967 0.90393 1.09943 1.22142 0.96034 0.91945 1.02583 1.17803 0.87459 0.81724 0.97283 0.94232 1.59460 1.45409 1.26995 1.03715 1.21583 1.17321 1.32597 0.92031 0.93969 1.25559 0.93819 0.92951 1.04835 1.70545 1.41154 1.38291 1.02842 0.83682 0.76168 0.76108 0.74922 1.20933 1.21818 1.21717 1.19156 0.91457 0.94294 1.09740 1.18004 0.89424 0.88241 1.02889 1.19853 0.99215 0.89041 1.09569 1.20445 0.91109 0.98674 0.99219 1.20748 0.97776 0.93398 1.10814 1.17204 0.77971 0.91485 0.98350 1.91557 1.34429 1.91232 1.92899 0.91778 0.90280 0.90605 0.82242 0.88871 0.86462 0.89867 0.86557 0.85450 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 11.02 59.84 0.66 1.56 16 2 N -0.49 -7.90 3.18 -121.80 -0.39 -8.29 16 3 C 0.00 0.09 10.54 -16.72 -0.18 -0.09 16 4 C -0.12 -2.66 5.39 -102.71 -0.55 -3.21 16 5 C 0.27 6.85 2.70 -70.01 -0.19 6.66 16 6 H 0.04 1.14 7.94 -51.93 -0.41 0.73 16 7 N -0.83 -19.14 7.49 -6.65 -0.05 -19.19 16 8 C -0.60 -17.26 8.71 -34.44 -0.30 -17.56 16 9 H 0.04 1.26 7.74 -52.49 -0.41 0.86 16 10 C 0.04 1.11 5.39 -17.82 -0.10 1.01 16 11 N -0.89 -27.73 13.51 55.43 0.75 -26.98 16 12 Si 1.06 26.34 29.90 -169.99 -5.08 21.26 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 C -0.14 -2.98 6.33 -105.09 -0.67 -3.65 16 17 C 0.12 2.18 6.80 -84.00 -0.57 1.60 16 18 C -0.16 -2.26 9.95 -39.43 -0.39 -2.65 16 19 C -0.08 -1.04 10.01 -39.55 -0.40 -1.44 16 20 C -0.21 -3.38 10.01 -39.51 -0.40 -3.78 16 21 C 0.17 3.51 7.34 -39.14 -0.29 3.23 16 22 F -0.12 -2.86 17.15 2.25 0.04 -2.82 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.08 0.69 8.14 -51.92 -0.42 0.26 16 25 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 26 H 0.16 2.57 7.31 -52.49 -0.38 2.19 16 27 H 0.30 6.10 9.06 -39.29 -0.36 5.74 16 28 H 0.32 7.05 7.99 -39.29 -0.31 6.74 16 29 H 0.29 8.96 6.39 -40.82 -0.26 8.70 16 30 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 281.74 15.07 4.25 4.25 Total: -1.00 -33.74 281.74 -7.31 -41.05 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -3.46 Total: 9.04 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -3.36 Total: -18.31 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.31 Total: -54.46 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 26.34 SS G_CDS: -5.08 Total: 21.26 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.74 -7.31 -41.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259505372.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.049 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds