Wall clock time and date at job start Mon Mar 30 2020 06:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37703 * 125.06130 * 2 1 4 4 C 1.39157 * 133.40436 * 0.03646 * 3 2 1 5 5 C 1.37712 * 119.96444 * 179.97438 * 4 3 2 6 6 C 1.38840 * 120.69169 * 0.02562 * 5 4 3 7 7 C 1.37825 * 120.35429 * 0.24116 * 6 5 4 8 8 F 1.35094 * 120.19706 * 179.72150 * 7 6 5 9 9 C 1.39832 * 119.60742 * 359.48875 * 7 6 5 10 10 C 1.46498 * 133.98974 * 180.18910 * 9 7 6 11 11 C 1.34214 * 106.99004 * 180.30559 * 10 9 7 12 12 C 1.50697 * 125.04744 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47413 * 205.00514 * 12 11 10 14 14 N 1.46911 * 109.46977 * 325.00095 * 12 11 10 15 15 C 1.50700 * 109.47255 * 84.99898 * 12 11 10 16 16 H 1.07999 * 119.99804 * 359.97438 * 15 12 11 17 17 C 1.37878 * 120.00407 * 180.02562 * 15 12 11 18 18 N 1.31508 * 120.00226 * 180.02562 * 17 15 12 19 19 Si 1.86805 * 119.99710 * 0.02562 * 17 15 12 20 20 H 1.48496 * 109.47228 * 89.99770 * 19 17 15 21 21 H 1.48505 * 109.46783 * 210.00080 * 19 17 15 22 22 H 1.48500 * 109.47163 * 329.99781 * 19 17 15 23 23 H 1.09001 * 109.47224 * 89.97767 * 1 2 3 24 24 H 1.08998 * 109.47235 * 209.97878 * 1 2 3 25 25 H 1.09001 * 109.47473 * 329.97870 * 1 2 3 26 26 H 1.08002 * 120.02014 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.65314 * 180.02562 * 5 4 3 28 28 H 1.08002 * 119.81987 * 179.97438 * 6 5 4 29 29 H 1.07997 * 126.50801 * 0.32493 * 10 9 7 30 30 H 1.00897 * 111.00029 * 59.99934 * 14 12 11 31 31 H 1.00898 * 110.99410 * 183.95143 * 14 12 11 32 32 H 0.97006 * 120.00130 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1272 0.0000 4 6 1.9778 2.4906 0.0006 5 6 3.0092 3.4031 0.0010 6 6 4.3310 2.9785 0.0001 7 6 4.6304 1.6331 -0.0060 8 9 5.9177 1.2235 -0.0125 9 6 3.5938 0.6947 -0.0006 10 6 3.5468 -0.7695 -0.0010 11 6 2.2514 -1.1204 -0.0007 12 6 1.7386 -2.5374 -0.0015 13 1 0.7390 -2.5619 -0.4355 14 7 2.6386 -3.3834 -0.7968 15 6 1.6846 -3.0529 1.4136 16 1 1.9914 -2.4180 2.2316 17 6 1.2446 -4.3354 1.6639 18 7 1.1971 -4.7850 2.8988 19 14 0.7160 -5.4343 0.2487 20 1 1.8877 -6.1993 -0.2483 21 1 -0.3287 -6.3790 0.7193 22 1 0.1687 -4.5981 -0.8496 23 1 -0.3634 0.0004 -1.0277 24 1 -0.3633 -0.8901 0.5135 25 1 -0.3634 0.8898 0.5142 26 1 0.9535 2.8331 0.0017 27 1 2.7875 4.4601 0.0019 28 1 5.1290 3.7063 0.0000 29 1 4.3939 -1.4395 -0.0011 30 1 3.5723 -3.3775 -0.4145 31 1 2.2823 -4.3249 -0.8663 32 1 0.8879 -5.6875 3.0748 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259556059.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:33 Heat of formation + Delta-G solvation = 19.205568 kcal Electronic energy + Delta-G solvation = -17681.640154 eV Core-core repulsion = 14750.188223 eV Total energy + Delta-G solvation = -2931.451931 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.44068 -40.90311 -36.89105 -34.81241 -32.41802 -31.80693 -29.68996 -28.38962 -26.36183 -25.80406 -23.21853 -21.57703 -21.02225 -18.96754 -17.32523 -17.11594 -16.43595 -15.59080 -15.38313 -15.18607 -14.93849 -14.62768 -14.30234 -13.74204 -13.28847 -12.92053 -12.64760 -12.48189 -12.34654 -11.94844 -11.76355 -11.27816 -11.22667 -11.02228 -10.96283 -10.57705 -10.27924 -9.71113 -9.08209 -8.91990 -7.95342 -7.61710 -7.05540 -6.36180 -4.42216 1.33702 1.79553 3.03754 3.15354 3.17792 3.20084 3.31071 4.05042 4.09797 4.63730 4.91094 4.97340 5.12611 5.13206 5.36168 5.45361 5.52989 5.67510 5.71173 5.88184 5.95488 6.14366 6.32818 6.41745 6.56445 6.61751 6.70256 7.12128 7.22153 7.32351 7.62348 7.74924 7.96238 8.13774 8.33960 8.71601 9.20410 10.75846 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.032614 B = 0.006636 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.320814 B = 4218.231134 C = 4600.457615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.477 5.477 3 C 0.115 3.885 4 C -0.136 4.136 5 C -0.090 4.090 6 C -0.192 4.192 7 C 0.137 3.863 8 F -0.142 7.142 9 C -0.134 4.134 10 C -0.205 4.205 11 C 0.154 3.846 12 C 0.232 3.768 13 H 0.050 0.950 14 N -0.844 5.844 15 C -0.551 4.551 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.883 5.883 19 Si 0.871 3.129 20 H -0.272 1.272 21 H -0.288 1.288 22 H -0.260 1.260 23 H 0.064 0.936 24 H 0.095 0.905 25 H 0.075 0.925 26 H 0.119 0.881 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.144 0.856 30 H 0.338 0.662 31 H 0.322 0.678 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 11.473 -6.476 13.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.160 5.160 3 C 0.007 3.993 4 C -0.157 4.157 5 C -0.110 4.110 6 C -0.212 4.212 7 C 0.118 3.882 8 F -0.121 7.121 9 C -0.140 4.140 10 C -0.228 4.228 11 C 0.047 3.953 12 C 0.122 3.878 13 H 0.068 0.932 14 N -0.379 5.379 15 C -0.591 4.591 16 H 0.097 0.903 17 C -0.128 4.128 18 N -0.519 5.519 19 Si 0.699 3.301 20 H -0.198 1.198 21 H -0.215 1.215 22 H -0.185 1.185 23 H 0.083 0.917 24 H 0.113 0.887 25 H 0.094 0.906 26 H 0.137 0.863 27 H 0.146 0.854 28 H 0.145 0.855 29 H 0.162 0.838 30 H 0.150 0.850 31 H 0.139 0.861 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.494 11.733 -6.956 13.649 hybrid contribution -0.035 -1.339 0.390 1.395 sum -0.529 10.394 -6.565 12.305 Atomic orbital electron populations 1.21946 0.77332 1.04667 1.02529 1.43785 1.05937 1.03772 1.62488 1.17945 0.89381 0.88254 1.03717 1.19947 0.99464 0.89061 1.07248 1.20411 0.91055 0.98723 1.00781 1.20679 0.97740 0.93196 1.09585 1.17057 0.77069 0.91753 1.02353 1.91440 1.35414 1.91404 1.93796 1.19166 0.91656 0.94461 1.08743 1.21114 0.95946 0.90830 1.14938 1.20576 0.89563 0.88527 0.96663 1.18054 0.92520 0.83893 0.93316 0.93225 1.59515 1.06648 1.14307 1.57425 1.21541 1.46015 0.99739 0.91809 0.90301 1.25006 0.94366 0.97715 0.95682 1.69880 1.45393 1.17703 1.18907 0.87044 0.79152 0.81182 0.82715 1.19785 1.21479 1.18452 0.91703 0.88652 0.90585 0.86281 0.85442 0.85453 0.83788 0.84951 0.86142 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 10.56 59.85 0.63 1.77 16 2 N -0.48 -8.95 3.18 -117.20 -0.37 -9.32 16 3 C 0.11 2.07 6.80 -84.00 -0.57 1.49 16 4 C -0.14 -1.97 9.95 -39.43 -0.39 -2.36 16 5 C -0.09 -1.17 10.01 -39.55 -0.40 -1.57 16 6 C -0.19 -2.76 10.01 -39.51 -0.40 -3.15 16 7 C 0.14 2.41 7.34 -39.14 -0.29 2.12 16 8 F -0.14 -2.52 17.28 2.25 0.04 -2.48 16 9 C -0.13 -2.62 6.36 -105.09 -0.67 -3.29 16 10 C -0.20 -4.30 10.33 -37.67 -0.39 -4.69 16 11 C 0.15 3.29 5.83 -81.76 -0.48 2.81 16 12 C 0.23 5.27 2.25 -70.01 -0.16 5.12 16 13 H 0.05 1.13 6.40 -51.93 -0.33 0.80 16 14 N -0.84 -18.09 8.98 -6.65 -0.06 -18.15 16 15 C -0.55 -14.60 9.29 -34.44 -0.32 -14.92 16 16 H 0.08 2.36 7.98 -52.49 -0.42 1.94 16 17 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 18 N -0.88 -25.48 13.96 55.43 0.77 -24.70 16 19 Si 0.87 19.77 24.61 -169.99 -4.18 15.59 16 20 H -0.27 -5.95 7.01 56.52 0.40 -5.56 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.09 1.52 7.40 -51.93 -0.38 1.14 16 25 H 0.08 0.92 8.10 -51.93 -0.42 0.49 16 26 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 27 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 28 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 29 H 0.14 2.91 7.39 -52.49 -0.39 2.53 16 30 H 0.34 6.97 7.94 -39.29 -0.31 6.66 16 31 H 0.32 6.91 4.29 -39.29 -0.17 6.74 16 32 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 272.99 15.07 4.11 4.11 Total: -1.00 -29.77 272.99 -6.50 -36.26 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -3.29 Total: 13.39 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -3.52 Total: -14.69 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.34 Total: -52.17 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.18 Total: 15.59 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.77 -6.50 -36.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259556059.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.468 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds