Wall clock time and date at job start Mon Mar 30 2020 06:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37703 * 125.06130 * 2 1 4 4 C 1.39157 * 133.40436 * 0.03646 * 3 2 1 5 5 C 1.37712 * 119.96444 * 179.97438 * 4 3 2 6 6 C 1.38840 * 120.69169 * 0.02562 * 5 4 3 7 7 C 1.37825 * 120.35429 * 0.24116 * 6 5 4 8 8 F 1.35094 * 120.19706 * 179.72150 * 7 6 5 9 9 C 1.39832 * 119.60742 * 359.48875 * 7 6 5 10 10 C 1.46498 * 133.98974 * 180.18910 * 9 7 6 11 11 C 1.34214 * 106.99004 * 180.30559 * 10 9 7 12 12 C 1.50697 * 125.04744 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.47413 * 205.00514 * 12 11 10 14 14 N 1.46911 * 109.46977 * 325.00095 * 12 11 10 15 15 C 1.50700 * 109.47255 * 84.99898 * 12 11 10 16 16 H 1.07999 * 119.99804 * 359.97438 * 15 12 11 17 17 C 1.37878 * 120.00407 * 180.02562 * 15 12 11 18 18 N 1.31508 * 120.00226 * 180.02562 * 17 15 12 19 19 Si 1.86805 * 119.99710 * 0.02562 * 17 15 12 20 20 H 1.48496 * 109.47228 * 89.99770 * 19 17 15 21 21 H 1.48505 * 109.46783 * 210.00080 * 19 17 15 22 22 H 1.48500 * 109.47163 * 329.99781 * 19 17 15 23 23 H 1.09001 * 109.47224 * 89.97767 * 1 2 3 24 24 H 1.08998 * 109.47235 * 209.97878 * 1 2 3 25 25 H 1.09001 * 109.47473 * 329.97870 * 1 2 3 26 26 H 1.08002 * 120.02014 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.65314 * 180.02562 * 5 4 3 28 28 H 1.08002 * 119.81987 * 179.97438 * 6 5 4 29 29 H 1.07997 * 126.50801 * 0.32493 * 10 9 7 30 30 H 1.00897 * 111.00029 * 59.99934 * 14 12 11 31 31 H 1.00898 * 110.99410 * 183.95143 * 14 12 11 32 32 H 0.97006 * 120.00130 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1272 0.0000 4 6 1.9778 2.4906 0.0006 5 6 3.0092 3.4031 0.0010 6 6 4.3310 2.9785 0.0001 7 6 4.6304 1.6331 -0.0060 8 9 5.9177 1.2235 -0.0125 9 6 3.5938 0.6947 -0.0006 10 6 3.5468 -0.7695 -0.0010 11 6 2.2514 -1.1204 -0.0007 12 6 1.7386 -2.5374 -0.0015 13 1 0.7390 -2.5619 -0.4355 14 7 2.6386 -3.3834 -0.7968 15 6 1.6846 -3.0529 1.4136 16 1 1.9914 -2.4180 2.2316 17 6 1.2446 -4.3354 1.6639 18 7 1.1971 -4.7850 2.8988 19 14 0.7160 -5.4343 0.2487 20 1 1.8877 -6.1993 -0.2483 21 1 -0.3287 -6.3790 0.7193 22 1 0.1687 -4.5981 -0.8496 23 1 -0.3634 0.0004 -1.0277 24 1 -0.3633 -0.8901 0.5135 25 1 -0.3634 0.8898 0.5142 26 1 0.9535 2.8331 0.0017 27 1 2.7875 4.4601 0.0019 28 1 5.1290 3.7063 0.0000 29 1 4.3939 -1.4395 -0.0011 30 1 3.5723 -3.3775 -0.4145 31 1 2.2823 -4.3249 -0.8663 32 1 0.8879 -5.6875 3.0748 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259556059.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:32 Heat of formation + Delta-G solvation = -0.822645 kcal Electronic energy + Delta-G solvation = -17682.508642 eV Core-core repulsion = 14750.188223 eV Total energy + Delta-G solvation = -2932.320419 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.76539 -42.26889 -38.22963 -36.52524 -34.10463 -33.46891 -30.91914 -29.79467 -28.20703 -27.12195 -24.89990 -22.84500 -22.42709 -20.46793 -19.22710 -18.52511 -18.00736 -16.88369 -16.81346 -16.63007 -16.23835 -16.09755 -15.88017 -15.33709 -14.89990 -14.53530 -14.04665 -13.87275 -13.65299 -13.43860 -13.24055 -12.89189 -12.85690 -12.45025 -12.35515 -12.00270 -11.86699 -11.67384 -10.97821 -10.41652 -9.64507 -9.06525 -8.48308 -8.42439 -6.57055 0.06934 0.58135 1.23538 1.29684 1.39189 1.78290 1.88382 2.16187 2.80704 2.87199 3.38202 3.71381 3.79831 3.94748 4.04350 4.17896 4.28861 4.42960 4.47082 4.59435 4.69129 4.74999 4.89741 5.07762 5.21968 5.25392 5.35748 5.48300 5.75733 5.86589 5.98282 6.19941 6.33494 6.38592 6.50693 6.58262 7.09758 8.70581 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.032614 B = 0.006636 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.320814 B = 4218.231134 C = 4600.457615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.483 5.483 3 C 0.102 3.898 4 C -0.133 4.133 5 C -0.073 4.073 6 C -0.178 4.178 7 C 0.107 3.893 8 F -0.152 7.152 9 C -0.171 4.171 10 C -0.226 4.226 11 C 0.127 3.873 12 C 0.243 3.757 13 H 0.054 0.946 14 N -0.835 5.835 15 C -0.552 4.552 16 H 0.027 0.973 17 C 0.024 3.976 18 N -0.933 5.933 19 Si 0.938 3.062 20 H -0.255 1.255 21 H -0.287 1.287 22 H -0.242 1.242 23 H 0.087 0.913 24 H 0.075 0.925 25 H 0.106 0.894 26 H 0.155 0.845 27 H 0.178 0.822 28 H 0.159 0.841 29 H 0.134 0.866 30 H 0.340 0.660 31 H 0.323 0.677 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.936 13.867 -8.261 16.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.166 5.166 3 C -0.005 4.005 4 C -0.154 4.154 5 C -0.092 4.092 6 C -0.198 4.198 7 C 0.088 3.912 8 F -0.131 7.131 9 C -0.176 4.176 10 C -0.250 4.250 11 C 0.019 3.981 12 C 0.133 3.867 13 H 0.072 0.928 14 N -0.369 5.369 15 C -0.592 4.592 16 H 0.045 0.955 17 C -0.177 4.177 18 N -0.571 5.571 19 Si 0.762 3.238 20 H -0.180 1.180 21 H -0.214 1.214 22 H -0.166 1.166 23 H 0.106 0.894 24 H 0.094 0.906 25 H 0.125 0.875 26 H 0.172 0.828 27 H 0.195 0.805 28 H 0.176 0.824 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.140 0.860 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.474 14.153 -8.754 16.707 hybrid contribution 0.334 -1.882 1.023 2.168 sum -1.140 12.271 -7.732 14.548 Atomic orbital electron populations 1.22188 0.75355 1.05236 1.04200 1.43939 1.07143 1.03218 1.62288 1.18420 0.88575 0.89508 1.04024 1.20459 1.01888 0.87303 1.05743 1.21036 0.89730 1.00890 0.97509 1.21167 0.99659 0.92067 1.06886 1.17446 0.76456 0.92977 1.04366 1.91405 1.35899 1.91709 1.94096 1.19402 0.93517 0.93862 1.10863 1.21213 0.95825 0.92396 1.15601 1.20342 0.90250 0.88738 0.98786 1.17799 0.92996 0.85138 0.90814 0.92833 1.59492 1.06583 1.14192 1.56681 1.21642 1.45511 0.99378 0.92668 0.95461 1.25871 0.94167 0.99195 0.98420 1.70033 1.47058 1.18435 1.21544 0.85958 0.79251 0.79137 0.79459 1.18025 1.21397 1.16582 0.89410 0.90644 0.87509 0.82773 0.80509 0.82383 0.84857 0.84682 0.86025 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.99 10.56 127.77 1.35 3.34 16 2 N -0.48 -17.97 3.18 -524.71 -1.67 -19.64 16 3 C 0.10 3.54 6.80 39.02 0.27 3.81 16 4 C -0.13 -3.31 9.95 22.37 0.22 -3.09 16 5 C -0.07 -1.51 10.01 22.29 0.22 -1.29 16 6 C -0.18 -4.50 10.01 22.32 0.22 -4.27 16 7 C 0.11 3.69 7.34 22.56 0.17 3.86 16 8 F -0.15 -5.48 17.28 44.97 0.78 -4.71 16 9 C -0.17 -6.73 6.36 -20.16 -0.13 -6.86 16 10 C -0.23 -9.95 10.33 23.51 0.24 -9.71 16 11 C 0.13 5.59 5.83 40.85 0.24 5.82 16 12 C 0.24 11.25 2.25 43.42 0.10 11.35 16 13 H 0.05 2.43 6.40 -2.39 -0.02 2.41 16 14 N -0.84 -35.84 8.98 -174.94 -1.57 -37.41 16 15 C -0.55 -30.59 9.29 25.60 0.24 -30.35 16 16 H 0.03 1.74 7.98 -2.91 -0.02 1.72 16 17 C 0.02 1.31 5.47 84.66 0.46 1.78 16 18 N -0.93 -55.84 13.96 21.45 0.30 -55.54 16 19 Si 0.94 40.83 24.61 68.60 1.69 42.52 16 20 H -0.26 -10.40 7.01 99.48 0.70 -9.71 16 21 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 23 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.07 2.41 7.40 -2.39 -0.02 2.39 16 25 H 0.11 2.28 8.10 -2.39 -0.02 2.26 16 26 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 27 H 0.18 2.03 8.06 -2.91 -0.02 2.00 16 28 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 29 H 0.13 5.83 7.39 -2.91 -0.02 5.81 16 30 H 0.34 14.41 7.94 -89.70 -0.71 13.70 16 31 H 0.32 13.50 4.29 -89.70 -0.38 13.11 16 32 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -68.67 272.99 3.13 -65.55 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: 0.00 Total: 34.85 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 3.60 Total: -25.62 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -2.94 Total: -112.59 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.78 Total: -4.71 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.69 Total: 42.52 kcal Total: -68.67 3.13 -65.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259556059.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.723 kcal (2) G-P(sol) polarization free energy of solvation -68.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds