Wall clock time and date at job start Mon Mar 30 2020 06:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37699 * 125.06340 * 2 1 4 4 C 1.39171 * 133.40403 * 359.97438 * 3 2 1 5 5 C 1.37710 * 119.96172 * 179.27195 * 4 3 2 6 6 C 1.38838 * 120.69660 * 0.62664 * 5 4 3 7 7 C 1.37829 * 120.35063 * 359.60808 * 6 5 4 8 8 F 1.35095 * 120.19715 * 179.97438 * 7 6 5 9 9 C 1.39830 * 119.60829 * 359.97438 * 7 6 5 10 10 C 1.46502 * 133.98936 * 180.02562 * 9 7 6 11 11 C 1.34211 * 106.99005 * 179.73333 * 10 9 7 12 12 C 1.50698 * 125.04538 * 180.22649 * 11 10 9 13 13 H 1.08996 * 109.47571 * 155.24167 * 12 11 10 14 14 N 1.46901 * 109.46883 * 35.24442 * 12 11 10 15 15 C 1.50696 * 109.47362 * 275.24707 * 12 11 10 16 16 H 1.08001 * 120.00239 * 359.97438 * 15 12 11 17 17 C 1.37886 * 120.00265 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99603 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 119.99958 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.46722 * 89.99956 * 19 17 15 21 21 H 1.48498 * 109.46792 * 209.99956 * 19 17 15 22 22 H 1.48496 * 109.47085 * 329.99609 * 19 17 15 23 23 H 1.09003 * 109.47571 * 264.83933 * 1 2 3 24 24 H 1.09002 * 109.47312 * 24.84630 * 1 2 3 25 25 H 1.09012 * 109.46797 * 144.84065 * 1 2 3 26 26 H 1.07996 * 120.01763 * 0.02562 * 4 3 2 27 27 H 1.08003 * 119.65367 * 180.26096 * 5 4 3 28 28 H 1.07998 * 119.82745 * 179.63436 * 6 5 4 29 29 H 1.07998 * 126.50464 * 0.02562 * 10 9 7 30 30 H 1.00896 * 111.00154 * 295.29048 * 14 12 11 31 31 H 1.00899 * 111.00430 * 59.24872 * 14 12 11 32 32 H 0.97001 * 119.99669 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1271 0.0000 4 6 1.9778 2.4907 -0.0005 5 6 3.0092 3.4031 0.0149 6 6 4.3310 2.9785 0.0178 7 6 4.6304 1.6331 0.0135 8 9 5.9177 1.2235 0.0158 9 6 3.5938 0.6947 0.0067 10 6 3.5468 -0.7695 0.0014 11 6 2.2514 -1.1204 0.0018 12 6 1.7387 -2.5374 0.0021 13 1 0.7377 -2.5616 0.4327 14 7 2.6360 -3.3826 0.8012 15 6 1.6895 -3.0542 -1.4126 16 1 1.9983 -2.4199 -2.2303 17 6 1.2494 -4.3367 -1.6633 18 7 0.8729 -5.1090 -0.6676 19 14 1.1878 -4.9770 -3.4171 20 1 2.4825 -5.6214 -3.7544 21 1 0.0922 -5.9715 -3.5427 22 1 0.9398 -3.8471 -4.3481 23 1 -0.3634 -0.0924 1.0235 24 1 -0.3634 0.9325 -0.4318 25 1 -0.3633 -0.8403 -0.5919 26 1 0.9535 2.8331 -0.0005 27 1 2.7875 4.4601 0.0187 28 1 5.1290 3.7063 0.0239 29 1 4.3939 -1.4395 0.0022 30 1 3.5509 -3.4384 0.3796 31 1 2.6956 -3.0492 1.7517 32 1 0.5630 -6.0111 -0.8440 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259556062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:35 Heat of formation + Delta-G solvation = 14.236707 kcal Electronic energy + Delta-G solvation = -17635.472246 eV Core-core repulsion = 14703.804849 eV Total energy + Delta-G solvation = -2931.667397 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.47027 -40.88546 -36.84423 -34.38395 -32.37885 -31.41484 -29.66290 -28.13387 -26.20186 -25.73622 -23.09813 -21.54357 -21.05971 -19.00338 -17.17506 -16.58485 -16.22503 -15.60499 -15.33912 -15.00035 -14.70753 -14.59807 -14.25939 -13.88461 -13.14693 -12.69312 -12.60600 -12.35764 -12.25860 -11.91152 -11.42347 -11.21015 -11.11074 -10.94579 -10.78555 -10.64752 -9.97648 -9.34912 -9.07844 -8.56503 -7.79458 -7.38790 -7.03711 -6.01495 -4.18231 1.31679 1.78087 3.22626 3.26666 3.30178 3.34810 3.40092 4.02505 4.39452 4.62638 4.94633 5.12198 5.13936 5.24313 5.37403 5.55268 5.57930 5.68148 5.89336 5.95228 6.15220 6.18594 6.33396 6.42542 6.57134 6.66959 6.93990 7.09855 7.36758 7.67807 7.75874 7.80792 8.00502 8.48099 8.86940 8.98593 9.51772 11.02339 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.028771 B = 0.006455 C = 0.006067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.970548 B = 4336.581711 C = 4614.346298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.476 5.476 3 C 0.110 3.890 4 C -0.136 4.136 5 C -0.092 4.092 6 C -0.191 4.191 7 C 0.134 3.866 8 F -0.143 7.143 9 C -0.133 4.133 10 C -0.229 4.229 11 C 0.110 3.890 12 C 0.276 3.724 13 H 0.049 0.951 14 N -0.800 5.800 15 C -0.536 4.536 16 H 0.056 0.944 17 C 0.086 3.914 18 N -0.844 5.844 19 Si 0.888 3.112 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.141 0.859 30 H 0.326 0.674 31 H 0.301 0.699 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.826 12.913 2.368 13.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.158 5.158 3 C 0.002 3.998 4 C -0.157 4.157 5 C -0.111 4.111 6 C -0.212 4.212 7 C 0.115 3.885 8 F -0.121 7.121 9 C -0.139 4.139 10 C -0.252 4.252 11 C 0.000 4.000 12 C 0.165 3.835 13 H 0.067 0.933 14 N -0.325 5.325 15 C -0.575 4.575 16 H 0.074 0.926 17 C -0.122 4.122 18 N -0.478 5.478 19 Si 0.715 3.285 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.200 1.200 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.115 0.885 26 H 0.137 0.863 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.159 0.841 30 H 0.138 0.862 31 H 0.112 0.888 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.091 12.028 2.287 12.244 hybrid contribution 0.804 0.483 -0.900 1.300 sum 0.713 12.512 1.386 12.608 Atomic orbital electron populations 1.21927 0.77245 1.04220 1.02878 1.44022 1.06046 1.03856 1.61905 1.18061 0.89531 0.88459 1.03723 1.19967 0.99426 0.89167 1.07180 1.20408 0.91066 0.98723 1.00942 1.20675 0.97731 0.93187 1.09591 1.17070 0.77057 0.91789 1.02631 1.91436 1.35463 1.91410 1.93840 1.19168 0.91655 0.94465 1.08631 1.21153 0.96088 0.90995 1.16972 1.23093 0.90118 0.91424 0.95350 1.17998 0.92902 0.77509 0.95104 0.93345 1.59289 1.15341 1.55012 1.02902 1.20774 1.47490 0.99180 0.90083 0.92564 1.24940 0.94151 0.96577 0.96537 1.70102 1.39997 1.07605 1.30127 0.86683 0.77839 0.78766 0.85179 1.20468 1.21164 1.19991 0.91680 0.90794 0.88548 0.86320 0.85478 0.85495 0.84134 0.86178 0.88844 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 10.48 59.84 0.63 1.81 16 2 N -0.48 -8.92 3.18 -117.19 -0.37 -9.29 16 3 C 0.11 1.99 6.80 -84.00 -0.57 1.41 16 4 C -0.14 -1.99 9.87 -39.43 -0.39 -2.37 16 5 C -0.09 -1.20 10.01 -39.55 -0.40 -1.60 16 6 C -0.19 -2.77 10.01 -39.51 -0.40 -3.16 16 7 C 0.13 2.36 7.34 -39.14 -0.29 2.07 16 8 F -0.14 -2.55 17.28 2.25 0.04 -2.51 16 9 C -0.13 -2.59 6.36 -105.09 -0.67 -3.26 16 10 C -0.23 -4.76 10.36 -37.67 -0.39 -5.15 16 11 C 0.11 2.33 5.79 -81.76 -0.47 1.86 16 12 C 0.28 6.51 2.67 -70.02 -0.19 6.32 16 13 H 0.05 1.22 7.45 -51.93 -0.39 0.83 16 14 N -0.80 -18.17 8.35 -6.65 -0.06 -18.22 16 15 C -0.54 -14.12 8.67 -34.44 -0.30 -14.42 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.09 2.29 5.39 -17.82 -0.10 2.19 16 18 N -0.84 -23.46 12.77 55.43 0.71 -22.75 16 19 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.07 0.89 7.82 -51.93 -0.41 0.49 16 25 H 0.10 1.57 7.66 -51.92 -0.40 1.18 16 26 H 0.12 1.40 7.88 -52.49 -0.41 0.99 16 27 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 28 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.14 2.84 7.51 -52.49 -0.39 2.45 16 30 H 0.33 7.23 8.12 -39.29 -0.32 6.91 16 31 H 0.30 6.13 9.02 -39.29 -0.35 5.78 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 281.96 15.07 4.25 4.25 Total: -1.00 -29.38 281.96 -7.46 -36.84 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -3.48 Total: 10.29 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -3.53 Total: -14.29 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.28 Total: -50.27 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.38 -7.46 -36.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259556062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.072 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds