Wall clock time and date at job start Mon Mar 30 2020 06:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37699 * 125.06340 * 2 1 4 4 C 1.39171 * 133.40403 * 359.97438 * 3 2 1 5 5 C 1.37710 * 119.96172 * 179.27195 * 4 3 2 6 6 C 1.38838 * 120.69660 * 0.62664 * 5 4 3 7 7 C 1.37829 * 120.35063 * 359.60808 * 6 5 4 8 8 F 1.35095 * 120.19715 * 179.97438 * 7 6 5 9 9 C 1.39830 * 119.60829 * 359.97438 * 7 6 5 10 10 C 1.46502 * 133.98936 * 180.02562 * 9 7 6 11 11 C 1.34211 * 106.99005 * 179.73333 * 10 9 7 12 12 C 1.50698 * 125.04538 * 180.22649 * 11 10 9 13 13 H 1.08996 * 109.47571 * 155.24167 * 12 11 10 14 14 N 1.46901 * 109.46883 * 35.24442 * 12 11 10 15 15 C 1.50696 * 109.47362 * 275.24707 * 12 11 10 16 16 H 1.08001 * 120.00239 * 359.97438 * 15 12 11 17 17 C 1.37886 * 120.00265 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99603 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 119.99958 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.46722 * 89.99956 * 19 17 15 21 21 H 1.48498 * 109.46792 * 209.99956 * 19 17 15 22 22 H 1.48496 * 109.47085 * 329.99609 * 19 17 15 23 23 H 1.09003 * 109.47571 * 264.83933 * 1 2 3 24 24 H 1.09002 * 109.47312 * 24.84630 * 1 2 3 25 25 H 1.09012 * 109.46797 * 144.84065 * 1 2 3 26 26 H 1.07996 * 120.01763 * 0.02562 * 4 3 2 27 27 H 1.08003 * 119.65367 * 180.26096 * 5 4 3 28 28 H 1.07998 * 119.82745 * 179.63436 * 6 5 4 29 29 H 1.07998 * 126.50464 * 0.02562 * 10 9 7 30 30 H 1.00896 * 111.00154 * 295.29048 * 14 12 11 31 31 H 1.00899 * 111.00430 * 59.24872 * 14 12 11 32 32 H 0.97001 * 119.99669 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1271 0.0000 4 6 1.9778 2.4907 -0.0005 5 6 3.0092 3.4031 0.0149 6 6 4.3310 2.9785 0.0178 7 6 4.6304 1.6331 0.0135 8 9 5.9177 1.2235 0.0158 9 6 3.5938 0.6947 0.0067 10 6 3.5468 -0.7695 0.0014 11 6 2.2514 -1.1204 0.0018 12 6 1.7387 -2.5374 0.0021 13 1 0.7377 -2.5616 0.4327 14 7 2.6360 -3.3826 0.8012 15 6 1.6895 -3.0542 -1.4126 16 1 1.9983 -2.4199 -2.2303 17 6 1.2494 -4.3367 -1.6633 18 7 0.8729 -5.1090 -0.6676 19 14 1.1878 -4.9770 -3.4171 20 1 2.4825 -5.6214 -3.7544 21 1 0.0922 -5.9715 -3.5427 22 1 0.9398 -3.8471 -4.3481 23 1 -0.3634 -0.0924 1.0235 24 1 -0.3634 0.9325 -0.4318 25 1 -0.3633 -0.8403 -0.5919 26 1 0.9535 2.8331 -0.0005 27 1 2.7875 4.4601 0.0187 28 1 5.1290 3.7063 0.0239 29 1 4.3939 -1.4395 0.0022 30 1 3.5509 -3.4384 0.3796 31 1 2.6956 -3.0492 1.7517 32 1 0.5630 -6.0111 -0.8440 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259556062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:34 Heat of formation + Delta-G solvation = -3.968310 kcal Electronic energy + Delta-G solvation = -17636.261675 eV Core-core repulsion = 14703.804849 eV Total energy + Delta-G solvation = -2932.456825 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.79247 -42.26158 -38.15799 -36.14755 -33.92084 -33.18631 -30.89014 -29.56741 -28.06605 -27.08259 -24.79264 -22.81082 -22.47304 -20.52218 -18.57324 -18.49144 -17.61896 -16.89758 -16.70388 -16.54641 -16.26287 -16.04157 -15.85081 -15.39933 -14.74338 -14.21583 -13.98874 -13.89039 -13.55306 -13.20399 -13.14681 -12.78664 -12.70591 -12.43331 -12.31538 -12.10317 -11.82852 -11.25900 -10.62552 -10.44078 -9.26804 -9.02689 -8.47557 -8.05421 -6.28660 0.04836 0.56507 1.40545 1.42724 1.51024 1.76247 1.93964 2.44206 2.78328 3.18253 3.37497 3.73237 3.91424 3.97930 4.18184 4.28399 4.36211 4.42050 4.45628 4.67715 4.75104 4.78531 4.92707 5.14294 5.23295 5.36478 5.47600 5.67885 5.73275 5.90298 6.04316 6.23649 6.44068 6.56018 6.95205 7.14083 7.44365 8.97116 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.028771 B = 0.006455 C = 0.006067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.970548 B = 4336.581711 C = 4614.346298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.482 5.482 3 C 0.098 3.902 4 C -0.134 4.134 5 C -0.074 4.074 6 C -0.178 4.178 7 C 0.105 3.895 8 F -0.153 7.153 9 C -0.169 4.169 10 C -0.244 4.244 11 C 0.090 3.910 12 C 0.285 3.715 13 H 0.027 0.973 14 N -0.808 5.808 15 C -0.547 4.547 16 H 0.040 0.960 17 C 0.044 3.956 18 N -0.873 5.873 19 Si 0.948 3.052 20 H -0.279 1.279 21 H -0.278 1.278 22 H -0.274 1.274 23 H 0.079 0.921 24 H 0.109 0.891 25 H 0.074 0.926 26 H 0.154 0.846 27 H 0.177 0.823 28 H 0.158 0.842 29 H 0.130 0.870 30 H 0.326 0.674 31 H 0.313 0.687 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.332 15.877 1.993 16.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.164 5.164 3 C -0.009 4.009 4 C -0.155 4.155 5 C -0.093 4.093 6 C -0.198 4.198 7 C 0.086 3.914 8 F -0.132 7.132 9 C -0.174 4.174 10 C -0.268 4.268 11 C -0.021 4.021 12 C 0.174 3.826 13 H 0.045 0.955 14 N -0.335 5.335 15 C -0.585 4.585 16 H 0.059 0.941 17 C -0.161 4.161 18 N -0.508 5.508 19 Si 0.773 3.227 20 H -0.205 1.205 21 H -0.204 1.204 22 H -0.199 1.199 23 H 0.098 0.902 24 H 0.127 0.873 25 H 0.093 0.907 26 H 0.171 0.829 27 H 0.194 0.806 28 H 0.176 0.824 29 H 0.148 0.852 30 H 0.138 0.862 31 H 0.124 0.876 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.596 15.011 1.913 15.144 hybrid contribution 0.996 -0.263 -0.750 1.275 sum 0.400 14.748 1.163 14.799 Atomic orbital electron populations 1.22116 0.75471 1.05166 1.03781 1.44123 1.07130 1.03395 1.61779 1.18506 0.88710 0.89647 1.04052 1.20470 1.01835 0.87428 1.05726 1.21028 0.89745 1.00875 0.97631 1.21162 0.99627 0.92085 1.06878 1.17449 0.76449 0.92986 1.04561 1.91404 1.35924 1.91708 1.94125 1.19387 0.93441 0.93855 1.10737 1.21198 0.95761 0.92462 1.17383 1.22522 0.90699 0.91205 0.97671 1.17583 0.92042 0.79308 0.93651 0.95535 1.59155 1.15183 1.55493 1.03622 1.20952 1.47172 0.99262 0.91145 0.94136 1.25587 0.93863 0.96752 0.99940 1.70200 1.40948 1.07829 1.31847 0.85750 0.77808 0.78132 0.80979 1.20461 1.20373 1.19855 0.90224 0.87261 0.90743 0.82882 0.80565 0.82416 0.85196 0.86158 0.87551 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.19 10.48 127.77 1.34 3.53 16 2 N -0.48 -17.99 3.18 -524.68 -1.67 -19.66 16 3 C 0.10 3.40 6.80 39.02 0.27 3.66 16 4 C -0.13 -3.33 9.87 22.37 0.22 -3.11 16 5 C -0.07 -1.53 10.01 22.29 0.22 -1.31 16 6 C -0.18 -4.46 10.01 22.32 0.22 -4.23 16 7 C 0.11 3.59 7.34 22.56 0.17 3.75 16 8 F -0.15 -5.45 17.28 44.97 0.78 -4.67 16 9 C -0.17 -6.57 6.36 -20.16 -0.13 -6.70 16 10 C -0.24 -10.60 10.36 23.51 0.24 -10.35 16 11 C 0.09 3.94 5.79 40.85 0.24 4.18 16 12 C 0.29 14.04 2.67 43.42 0.12 14.16 16 13 H 0.03 1.41 7.45 -2.39 -0.02 1.39 16 14 N -0.81 -38.28 8.35 -174.96 -1.46 -39.74 16 15 C -0.55 -29.75 8.67 25.60 0.22 -29.52 16 16 H 0.04 2.28 7.74 -2.91 -0.02 2.26 16 17 C 0.04 2.37 5.39 84.66 0.46 2.82 16 18 N -0.87 -49.52 12.77 21.45 0.27 -49.24 16 19 Si 0.95 43.18 29.54 68.60 2.03 45.20 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 23 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.11 2.33 7.82 -2.39 -0.02 2.32 16 25 H 0.07 2.48 7.66 -2.38 -0.02 2.47 16 26 H 0.15 2.74 7.88 -2.91 -0.02 2.71 16 27 H 0.18 2.02 8.06 -2.91 -0.02 1.99 16 28 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 29 H 0.13 5.65 7.51 -2.91 -0.02 5.63 16 30 H 0.33 15.21 8.12 -89.70 -0.73 14.48 16 31 H 0.31 13.32 9.02 -89.70 -0.81 12.51 16 32 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -65.48 281.96 3.15 -62.33 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -0.38 Total: 28.90 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 3.58 Total: -23.12 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -2.86 Total: -108.64 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.78 Total: -4.67 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -65.48 3.15 -62.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259556062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.360 kcal (2) G-P(sol) polarization free energy of solvation -65.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds